Csa5G096450 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G096450
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionmRNA, clone: RTFL01-15-D07; contains IPR009770 (Domain of unknown function DUF1338)
LocationChr5 : 2765905 .. 2766171 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAAGTTGGGTTTGTATTATGTGATGGATGGTCATGGGATTGACCCGTTAGCAAGCTTTTTTCTGGATTTAGGATATACTCAAAAAGAAGAATTATCATTCCTAGCCAAAAAGTTGAAAGCATTTTGGTTTTCACCTCCCTCCATTTCTAATGCTGCTAATGATGGTGATGAAGTGAATGGACCTCTGTCAAGAGTGTTCATATCACAACTTCTTGTGGATAAGAGTGTTCATATCACAACTTCTTGTGGATCAAATGAGTAA

mRNA sequence

ATGTTGAAGTTGGGTTTGTATTATGTGATGGATGGTCATGGGATTGACCCGTTAGCAAGCTTTTTTCTGGATTTAGGATATACTCAAAAAGAAGAATTATCATTCCTAGCCAAAAAGTTGAAAGCATTTTGGTTTTCACCTCCCTCCATTTCTAATGCTGCTAATGATGGTGATGAAGTGAATGGACCTCTGTCAAGAGTGTTCATATCACAACTTCTTGTGGATAAGAGTGTTCATATCACAACTTCTTGTGGATCAAATGAGTAA

Coding sequence (CDS)

ATGTTGAAGTTGGGTTTGTATTATGTGATGGATGGTCATGGGATTGACCCGTTAGCAAGCTTTTTTCTGGATTTAGGATATACTCAAAAAGAAGAATTATCATTCCTAGCCAAAAAGTTGAAAGCATTTTGGTTTTCACCTCCCTCCATTTCTAATGCTGCTAATGATGGTGATGAAGTGAATGGACCTCTGTCAAGAGTGTTCATATCACAACTTCTTGTGGATAAGAGTGTTCATATCACAACTTCTTGTGGATCAAATGAGTAA

Protein sequence

MLKLGLYYVMDGHGIDPLASFFLDLGYTQKEELSFLAKKLKAFWFSPPSISNAANDGDEVNGPLSRVFISQLLVDKSVHITTSCGSNE*
Homology
[Close]
BLAST of Csa5G096450 vs. TrEMBL
Match: A0A0A0KJI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G096450 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 8.2e-43
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MLKLGLYYVMDGHGIDPLASFFLDLGYTQKEELSFLAKKLKAFWFSPPSISNAANDGDEV 60
          MLKLGLYYVMDGHGIDPLASFFLDLGYTQKEELSFLAKKLKAFWFSPPSISNAANDGDEV
Sbjct: 1  MLKLGLYYVMDGHGIDPLASFFLDLGYTQKEELSFLAKKLKAFWFSPPSISNAANDGDEV 60

Query: 61 NGPLSRVFISQLLVDKSVHITTSCGSNE 89
          NGPLSRVFISQLLVDKSVHITTSCGSNE
Sbjct: 61 NGPLSRVFISQLLVDKSVHITTSCGSNE 88

[Close]
BLAST of Csa5G096450 vs. TrEMBL
Match: A0A0A0KJ38_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G403620 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-24
Identity = 59/67 (88.06%), Postives = 61/67 (91.04%), Query Frame = 1 

Query: 10  MDGHGIDPLASFFLDLGYTQKEELSFLAKKLKAFWFSPPSISNAANDGDEVNGPLSRVFI 69
           +DGHGID LASFFLD GYTQKEELSF AKKLKAFWFSPPSISNAA DGD VNGPL RVFI
Sbjct: 122 IDGHGIDSLASFFLDFGYTQKEELSFPAKKLKAFWFSPPSISNAAYDGDGVNGPLPRVFI 181

Query: 70  SQLLVDK 77
           SQLLVD+
Sbjct: 182 SQLLVDQ 188

[Close]
BLAST of Csa5G096450 vs. TrEMBL
Match: A0A022QM67_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a008554mg PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-16
Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = 1 

Query: 10  MDGHGIDPLASFFLDLGYTQKEELSFLAKKLKAFWFSPPSISNAANDGDEVNGPLSRVFI 69
           +DGHGID +A  F+D GY Q+EEL F AKKLKAFWFSPP+I + + DG  VNGPL R+FI
Sbjct: 119 VDGHGIDSMAKLFVDFGYVQREELRFPAKKLKAFWFSPPNIPH-SGDGTGVNGPLPRIFI 178

Query: 70  SQLLVDK 77
           S+LLVD+
Sbjct: 179 SELLVDQ 184

[Close]
BLAST of Csa5G096450 vs. TrEMBL
Match: Q5XWQ2_SOLTU (Putative uncharacterized protein OS=Solanum tuberosum PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.0e-16
Identity = 42/67 (62.69%), Postives = 55/67 (82.09%), Query Frame = 1 

Query: 10  MDGHGIDPLASFFLDLGYTQKEELSFLAKKLKAFWFSPPSISNAANDGDEVNGPLSRVFI 69
           ++GHGID ++ FFLD GY ++EEL F AKKLKAFWFSPP +S +++ G  VNGPL R+FI
Sbjct: 51  VNGHGIDSMSKFFLDFGYERREELRFPAKKLKAFWFSPPKVSTSSH-GSGVNGPLPRIFI 110

Query: 70  SQLLVDK 77
           S+LLVD+
Sbjct: 111 SELLVDQ 116

[Close]
BLAST of Csa5G096450 vs. TrEMBL
Match: A0A0B2PMB9_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_024621 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.0e-16
Identity = 44/67 (65.67%), Postives = 56/67 (83.58%), Query Frame = 1 

Query: 10  MDGHGIDPLASFFLDLGYTQKEELSFLAKKLKAFWFSPPSISNAANDGDEVNGPLSRVFI 69
           ++G+GID +ASFFLD GYTQ+EEL F AKKL+A WFSPP+ S A+N G  +NGPL R+FI
Sbjct: 125 VNGYGIDSMASFFLDYGYTQREELRFPAKKLRALWFSPPADSLASN-GSGINGPLPRIFI 184

Query: 70  SQLLVDK 77
           S+LLVD+
Sbjct: 185 SELLVDQ 190

[Close]
BLAST of Csa5G096450 vs. TAIR10
Match: AT1G07040.1 (AT1G07040.1 unknown protein)

HSP 1 Score: 85.1 bits (209), Expect = 2.4e-17
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 1 

Query: 12  GHGIDPLASFFLDLGYTQKEELSFLAKKLKAFWFSPPSISNAANDGDEVNGPLSRVFISQ 71
           G+GID LASFFLD GYT  +EL F AKKL+A WF+PP+ S A   G  VNGPL RVFIS+
Sbjct: 123 GYGIDSLASFFLDYGYTPMDELKFPAKKLRALWFAPPNAS-AVPGGSGVNGPLPRVFISE 182

Query: 72  LLVDK 77
           LLVD+
Sbjct: 183 LLVDQ 186

[Close]
BLAST of Csa5G096450 vs. TAIR10
Match: AT1G27020.1 (AT1G27020.1 unknown protein)

HSP 1 Score: 64.3 bits (155), Expect = 4.3e-11
Identity = 31/69 (44.93%), Postives = 41/69 (59.42%), Query Frame = 1 

Query: 8   YVMDGHGIDPLASFFLDLGYTQKEELSFLAKKLKAFWFSPPSISNAANDGDEVNGPLSRV 67
           + +DG+GID LASFF+D GY     L F  KK++  W SPP +    N     NGPL R+
Sbjct: 63  FKVDGYGIDSLASFFMDYGYKVGGRLDFPKKKVQVLWLSPPDVHFPDNGYGIGNGPLPRL 122

Query: 68  FISQLLVDK 77
            I++LLV++
Sbjct: 123 VIAELLVEE 131

[Close]
BLAST of Csa5G096450 vs. TAIR10
Match: AT1G27030.1 (AT1G27030.1 unknown protein)

HSP 1 Score: 64.3 bits (155), Expect = 4.3e-11
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 1 

Query: 10  MDGHGIDPLASFFLDLGYTQKEELSFLAKKLKAFWFSPPSISNAANDGDEV-NGPLSRVF 69
           +DG+GID L+SFF+  GY     L F  KKL+  WFSPP + +  NDG  + NGPL R+ 
Sbjct: 65  VDGYGIDSLSSFFMAYGYKIGGGLDFPKKKLRVLWFSPPDV-HVPNDGHGLGNGPLPRLV 124

Query: 70  ISQLLVDK 77
           I+++LVD+
Sbjct: 125 IAEVLVDE 131

[Close]
BLAST of Csa5G096450 vs. NCBI nr
Match: gi|700194561|gb|KGN49738.1| (hypothetical protein Csa_5G096450 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 1.2e-42
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MLKLGLYYVMDGHGIDPLASFFLDLGYTQKEELSFLAKKLKAFWFSPPSISNAANDGDEV 60
          MLKLGLYYVMDGHGIDPLASFFLDLGYTQKEELSFLAKKLKAFWFSPPSISNAANDGDEV
Sbjct: 1  MLKLGLYYVMDGHGIDPLASFFLDLGYTQKEELSFLAKKLKAFWFSPPSISNAANDGDEV 60

Query: 61 NGPLSRVFISQLLVDKSVHITTSCGSNE 89
          NGPLSRVFISQLLVDKSVHITTSCGSNE
Sbjct: 61 NGPLSRVFISQLLVDKSVHITTSCGSNE 88

[Close]
BLAST of Csa5G096450 vs. NCBI nr
Match: gi|659129660|ref|XP_008464777.1| (PREDICTED: uncharacterized protein LOC103502586 isoform X1 [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 6.4e-25
Identity = 60/67 (89.55%), Postives = 61/67 (91.04%), Query Frame = 1 

Query: 10  MDGHGIDPLASFFLDLGYTQKEELSFLAKKLKAFWFSPPSISNAANDGDEVNGPLSRVFI 69
           MDGHGID LASFFLD GYTQKEELSF AKKLKAFWFSPPSISNAA DGD VNGPL RVFI
Sbjct: 131 MDGHGIDSLASFFLDFGYTQKEELSFPAKKLKAFWFSPPSISNAAYDGDGVNGPLPRVFI 190

Query: 70  SQLLVDK 77
           SQLLVD+
Sbjct: 191 SQLLVDQ 197

[Close]
BLAST of Csa5G096450 vs. NCBI nr
Match: gi|659129662|ref|XP_008464778.1| (PREDICTED: uncharacterized protein LOC103502586 isoform X2 [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 6.4e-25
Identity = 60/67 (89.55%), Postives = 61/67 (91.04%), Query Frame = 1 

Query: 10  MDGHGIDPLASFFLDLGYTQKEELSFLAKKLKAFWFSPPSISNAANDGDEVNGPLSRVFI 69
           MDGHGID LASFFLD GYTQKEELSF AKKLKAFWFSPPSISNAA DGD VNGPL RVFI
Sbjct: 122 MDGHGIDSLASFFLDFGYTQKEELSFPAKKLKAFWFSPPSISNAAYDGDGVNGPLPRVFI 181

Query: 70  SQLLVDK 77
           SQLLVD+
Sbjct: 182 SQLLVDQ 188

[Close]
BLAST of Csa5G096450 vs. NCBI nr
Match: gi|778715928|ref|XP_011657480.1| (PREDICTED: uncharacterized protein LOC101218869 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-24
Identity = 59/67 (88.06%), Postives = 61/67 (91.04%), Query Frame = 1 

Query: 10  MDGHGIDPLASFFLDLGYTQKEELSFLAKKLKAFWFSPPSISNAANDGDEVNGPLSRVFI 69
           +DGHGID LASFFLD GYTQKEELSF AKKLKAFWFSPPSISNAA DGD VNGPL RVFI
Sbjct: 122 IDGHGIDSLASFFLDFGYTQKEELSFPAKKLKAFWFSPPSISNAAYDGDGVNGPLPRVFI 181

Query: 70  SQLLVDK 77
           SQLLVD+
Sbjct: 182 SQLLVDQ 188

[Close]
BLAST of Csa5G096450 vs. NCBI nr
Match: gi|848895182|ref|XP_012847632.1| (PREDICTED: uncharacterized protein LOC105967574 [Erythranthe guttata])

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-16
Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = 1 

Query: 10  MDGHGIDPLASFFLDLGYTQKEELSFLAKKLKAFWFSPPSISNAANDGDEVNGPLSRVFI 69
           +DGHGID +A  F+D GY Q+EEL F AKKLKAFWFSPP+I + + DG  VNGPL R+FI
Sbjct: 119 VDGHGIDSMAKLFVDFGYVQREELRFPAKKLKAFWFSPPNIPH-SGDGTGVNGPLPRIFI 178

Query: 70  SQLLVDK 77
           S+LLVD+
Sbjct: 179 SELLVDQ 184

The following BLAST results are available for this feature:
BLAST of Csa5G096450 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJI3_CUCSA8.2e-43100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G096450 PE=4 SV=1[more]
A0A0A0KJ38_CUCSA1.3e-2488.06Uncharacterized protein OS=Cucumis sativus GN=Csa_6G403620 PE=4 SV=1[more]
A0A022QM67_ERYGU1.3e-1665.67Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a008554mg PE=4 SV=1[more]
Q5XWQ2_SOLTU5.0e-1662.69Putative uncharacterized protein OS=Solanum tuberosum PE=4 SV=1[more]
A0A0B2PMB9_GLYSO5.0e-1665.67Uncharacterized protein OS=Glycine soja GN=glysoja_024621 PE=4 SV=1[more]
BLAST of Csa5G096450 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07040.12.4e-1766.15 unknown protein[more]
AT1G27020.14.3e-1144.93 unknown protein[more]
AT1G27030.14.3e-1148.53 unknown protein[more]
BLAST of Csa5G096450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194561|gb|KGN49738.1|1.2e-42100.00hypothetical protein Csa_5G096450 [Cucumis sativus][more]
gi|659129660|ref|XP_008464777.1|6.4e-2589.55PREDICTED: uncharacterized protein LOC103502586 isoform X1 [Cucumis melo][more]
gi|659129662|ref|XP_008464778.1|6.4e-2589.55PREDICTED: uncharacterized protein LOC103502586 isoform X2 [Cucumis melo][more]
gi|778715928|ref|XP_011657480.1|1.9e-2488.06PREDICTED: uncharacterized protein LOC101218869 [Cucumis sativus][more]
gi|848895182|ref|XP_012847632.1|1.9e-1665.67PREDICTED: uncharacterized protein LOC105967574 [Erythranthe guttata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009770DUF1338
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G096450.1Csa5G096450.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009770Domain of unknown function DUF1338PFAMPF07063DUF1338coord: 11..76
score: 3.4
NoneNo IPR availablePANTHERPTHR31136FAMILY NOT NAMEDcoord: 10..75
score: 1.4
NoneNo IPR availablePANTHERPTHR31136:SF1SUBFAMILY NOT NAMEDcoord: 10..75
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa5G096450Cucsa.026560Cucumber (Gy14) v1cgycuB538
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G096450Bottle gourd (USVL1VR-Ls)culsiB323
Csa5G096450Cucumber (Gy14) v2cgybcuB225
Csa5G096450Melon (DHL92) v3.6.1cumedB340
Csa5G096450Silver-seed gourdcarcuB0842
Csa5G096450Silver-seed gourdcarcuB0894
Csa5G096450Watermelon (97103) v2cuwmbB337
Csa5G096450Wax gourdcuwgoB439
Csa5G096450Cucurbita maxima (Rimu)cmacuB302
Csa5G096450Cucurbita maxima (Rimu)cmacuB727
Csa5G096450Cucurbita moschata (Rifu)cmocuB290
Csa5G096450Cucurbita moschata (Rifu)cmocuB719
Csa5G096450Melon (DHL92) v3.5.1cumeB362
Csa5G096450Watermelon (Charleston Gray)cuwcgB365
Csa5G096450Watermelon (97103) v1cuwmB409
Csa5G096450Cucurbita pepo (Zucchini)cpecuB178
Csa5G096450Cucurbita pepo (Zucchini)cpecuB420