Csa5G077770 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G077770
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 2351670 .. 2351955 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGGTTCGGTTAATTTTCGGGGCTTTTCCCTGTCTCCTGAATATCAAACCATGTGAGTCAGCTTCAGTTGCACTTTTGTATATAAGAAATATGATGCTGTCTTTTTTACACCATCTTGATTGCAGGGGTCTCTTTTTGTGTTGGGTTGTCAATGACAATGGGGGAGGAAGAAGCTCAAAACACCTTCCATCTTTACAATGTAAATGTAATATTTATGATTATGTATTGATCTGGATTTTGGAGGTACTGCTGCGGATTTCCCATTCTGGTCAATGGGTGTAA

mRNA sequence

ATGTTTGGTTCGGTTAATTTTCGGGGCTTTTCCCTGTCTCCTGAATATCAAACCATGGGTCTCTTTTTGTGTTGGGTTGTCAATGACAATGGGGGAGGAAGAAGCTCAAAACACCTTCCATCTTTACAATGTAAATGTAATATTTATGATTATGTATTGATCTGGATTTTGGAGGTACTGCTGCGGATTTCCCATTCTGGTCAATGGGTGTAA

Coding sequence (CDS)

ATGTTTGGTTCGGTTAATTTTCGGGGCTTTTCCCTGTCTCCTGAATATCAAACCATGGGTCTCTTTTTGTGTTGGGTTGTCAATGACAATGGGGGAGGAAGAAGCTCAAAACACCTTCCATCTTTACAATGTAAATGTAATATTTATGATTATGTATTGATCTGGATTTTGGAGGTACTGCTGCGGATTTCCCATTCTGGTCAATGGGTGTAA

Protein sequence

MFGSVNFRGFSLSPEYQTMGLFLCWVVNDNGGGRSSKHLPSLQCKCNIYDYVLIWILEVLLRISHSGQWV*
Homology
[Close]
BLAST of Csa5G077770 vs. TrEMBL
Match: A0A0A0KLH1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G077770 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.1e-34
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MFGSVNFRGFSLSPEYQTMGLFLCWVVNDNGGGRSSKHLPSLQCKCNIYDYVLIWILEVL 60
          MFGSVNFRGFSLSPEYQTMGLFLCWVVNDNGGGRSSKHLPSLQCKCNIYDYVLIWILEVL
Sbjct: 1  MFGSVNFRGFSLSPEYQTMGLFLCWVVNDNGGGRSSKHLPSLQCKCNIYDYVLIWILEVL 60

Query: 61 LRISHSGQWV 71
          LRISHSGQWV
Sbjct: 61 LRISHSGQWV 70

[Close]
BLAST of Csa5G077770 vs. NCBI nr
Match: gi|700194532|gb|KGN49709.1| (hypothetical protein Csa_5G077770 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 1.6e-34
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MFGSVNFRGFSLSPEYQTMGLFLCWVVNDNGGGRSSKHLPSLQCKCNIYDYVLIWILEVL 60
          MFGSVNFRGFSLSPEYQTMGLFLCWVVNDNGGGRSSKHLPSLQCKCNIYDYVLIWILEVL
Sbjct: 1  MFGSVNFRGFSLSPEYQTMGLFLCWVVNDNGGGRSSKHLPSLQCKCNIYDYVLIWILEVL 60

Query: 61 LRISHSGQWV 71
          LRISHSGQWV
Sbjct: 61 LRISHSGQWV 70

The following BLAST results are available for this feature:
BLAST of Csa5G077770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLH1_CUCSA1.1e-34100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G077770 PE=4 SV=1[more]
BLAST of Csa5G077770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194532|gb|KGN49709.1|1.6e-34100.00hypothetical protein Csa_5G077770 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU109465cucumber EST collection version 3.0transcribed_cluster
CU111006cucumber EST collection version 3.0transcribed_cluster
CU114036cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G077770.1Csa5G077770.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU114036CU114036transcribed_cluster
CU111006CU111006transcribed_cluster
CU109465CU109465transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G077770Melon (DHL92) v3.5.1cumeB381
Csa5G077770Watermelon (Charleston Gray)cuwcgB363
Csa5G077770Watermelon (97103) v1cuwmB436
Csa5G077770Cucurbita pepo (Zucchini)cpecuB448
Csa5G077770Bottle gourd (USVL1VR-Ls)culsiB338
Csa5G077770Cucumber (Gy14) v2cgybcuB225
Csa5G077770Melon (DHL92) v3.6.1cumedB365
Csa5G077770Watermelon (97103) v2cuwmbB359
Csa5G077770Cucumber (Gy14) v1cgycuB280
Csa5G077770Cucurbita maxima (Rimu)cmacuB760
Csa5G077770Cucurbita moschata (Rifu)cmocuB745