Csa5G056110 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G056110
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 1837179 .. 1837526 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTATCAAGCAAGTCACACAACACATACAAAAATATAACAAACAGTAAAAGTCGATGAACGTCGTCGAATCTGCTGTGTAGGTCACCGTCGAGAAAGACGCTGGCTATTTCTGGACAAGATCCACCGGAAAATTCGACGCCACGACCGAATTGCGTTATTGCCGCGCCCTCTCGTTAATGGGTAAGTTGCACGCCCTCGCGCAAGGATTCCGACTTGCGTGTTCTTGCGCGCCGCTTATCGCTGGCTGGAGGTTTGCGTGGTTACCGCCTGCCGCCGCCTATTTTACAGCCGTTGTGGTCGCCGGCGGTGAAAACGCTGGCAGGGCTGGGGTGTTCGGCGGCTGA

mRNA sequence

ATGTTTATCAAGCAAGTCACCGTCGAGAAAGACGCTGGCTATTTCTGGACAAGATCCACCGGAAAATTCGACGCCACGACCGAATTGCGTTATTGCCGCGCCCTCTCGTTAATGGGTAAGTTGCACGCCCTCGCGCAAGGATTCCGACTTGCGTGTTCTTGCGCGCCGCTTATCGCTGGCTGGAGGTTTGCGTGGTTACCGCCTGCCGCCGCCTATTTTACAGCCGTTGTGGTCGCCGGCGGTGAAAACGCTGGCAGGGCTGGGGTGTTCGGCGGCTGA

Coding sequence (CDS)

ATGTTTATCAAGCAAGTCACCGTCGAGAAAGACGCTGGCTATTTCTGGACAAGATCCACCGGAAAATTCGACGCCACGACCGAATTGCGTTATTGCCGCGCCCTCTCGTTAATGGGTAAGTTGCACGCCCTCGCGCAAGGATTCCGACTTGCGTGTTCTTGCGCGCCGCTTATCGCTGGCTGGAGGTTTGCGTGGTTACCGCCTGCCGCCGCCTATTTTACAGCCGTTGTGGTCGCCGGCGGTGAAAACGCTGGCAGGGCTGGGGTGTTCGGCGGCTGA

Protein sequence

MFIKQVTVEKDAGYFWTRSTGKFDATTELRYCRALSLMGKLHALAQGFRLACSCAPLIAGWRFAWLPPAAAYFTAVVVAGGENAGRAGVFGG*
Homology
[Close]
BLAST of Csa5G056110 vs. TrEMBL
Match: A0A0A0KPL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G056110 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 9.7e-47
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MFIKQVTVEKDAGYFWTRSTGKFDATTELRYCRALSLMGKLHALAQGFRLACSCAPLIAG 60
          MFIKQVTVEKDAGYFWTRSTGKFDATTELRYCRALSLMGKLHALAQGFRLACSCAPLIAG
Sbjct: 1  MFIKQVTVEKDAGYFWTRSTGKFDATTELRYCRALSLMGKLHALAQGFRLACSCAPLIAG 60

Query: 61 WRFAWLPPAAAYFTAVVVAGGENAGRAGVFGG 93
          WRFAWLPPAAAYFTAVVVAGGENAGRAGVFGG
Sbjct: 61 WRFAWLPPAAAYFTAVVVAGGENAGRAGVFGG 92

[Close]
BLAST of Csa5G056110 vs. NCBI nr
Match: gi|700194494|gb|KGN49671.1| (hypothetical protein Csa_5G056110 [Cucumis sativus])

HSP 1 Score: 193.7 bits (491), Expect = 1.4e-46
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MFIKQVTVEKDAGYFWTRSTGKFDATTELRYCRALSLMGKLHALAQGFRLACSCAPLIAG 60
          MFIKQVTVEKDAGYFWTRSTGKFDATTELRYCRALSLMGKLHALAQGFRLACSCAPLIAG
Sbjct: 1  MFIKQVTVEKDAGYFWTRSTGKFDATTELRYCRALSLMGKLHALAQGFRLACSCAPLIAG 60

Query: 61 WRFAWLPPAAAYFTAVVVAGGENAGRAGVFGG 93
          WRFAWLPPAAAYFTAVVVAGGENAGRAGVFGG
Sbjct: 61 WRFAWLPPAAAYFTAVVVAGGENAGRAGVFGG 92

The following BLAST results are available for this feature:
BLAST of Csa5G056110 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPL6_CUCSA9.7e-47100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G056110 PE=4 SV=1[more]
BLAST of Csa5G056110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194494|gb|KGN49671.1|1.4e-46100.00hypothetical protein Csa_5G056110 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU125687cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G056110.1Csa5G056110.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU125687CU125687transcribed_cluster