Csa5G055570 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G055570
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 1802010 .. 1802588 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTATTGGAAGTCAATGCTGCTGGGAGTTCTCTTCAAATAGTACATCAGACAGCTGAGTTGGGTTTTGTAGAATGTGGTGGACCGTATAACACAGACACATGCCCCATATGTAAGAAGACAGTTTCTTATGTGAAACATGACCCATATTCCAAAAATTACAATGAGGGTTGGAGAGACCATCCAAACTTTAGCTTGAGGGGTCAGAAGCAAAATGCACCACAATGATAAGGCGATCGATTAAACTATAGGGGCGAGGTGTCTGGCTACTGCCCAAGGAAATATCATGAATGGCCACAACAACCAATTCAACACCTGAACCATCACATACTTAACCAATCACATTCTTCATCATCTTCATTGCCATCAATGGAATCTCTATTTCAAGAATATATGCAGAGGAATGATGCCCTTTTGCAAAGCCAAGCTGCATCTATTAAAAATCTAGAGTTACAAATGGGACAAATAGCCAACGATATATCTAGGCAACCGAAAGGAACCCTCCCTAGCAACACAGAAATACCAATTCAAGGAGGGAGCTCAGGAAAAGAAAAGTGTCAAGCAGTGACACTATAA

mRNA sequence

ATGGCTCTATTGGAAGTCAATGCTGCTGGGAGTTCTCTTCAAATAGTACATCAGACAGCTGAGTTGGGTTTTGTAGAATGTGGTGGACCGGGCGAGGTGTCTGGCTACTGCCCAAGGAAATATCATGAATGGCCACAACAACCAATTCAACACCTGAACCATCACATACTTAACCAATCACATTCTTCATCATCTTCATTGCCATCAATGGAATCTCTATTTCAAGAATATATGCAGAGGAATGATGCCCTTTTGCAAAGCCAAGCTGCATCTATTAAAAATCTAGAGTTACAAATGGGACAAATAGCCAACGATATATCTAGGCAACCGAAAGGAACCCTCCCTAGCAACACAGAAATACCAATTCAAGGAGGGAGCTCAGGAAAAGAAAAGTGTCAAGCAGTGACACTATAA

Coding sequence (CDS)

ATGGCTCTATTGGAAGTCAATGCTGCTGGGAGTTCTCTTCAAATAGTACATCAGACAGCTGAGTTGGGTTTTGTAGAATGTGGTGGACCGGGCGAGGTGTCTGGCTACTGCCCAAGGAAATATCATGAATGGCCACAACAACCAATTCAACACCTGAACCATCACATACTTAACCAATCACATTCTTCATCATCTTCATTGCCATCAATGGAATCTCTATTTCAAGAATATATGCAGAGGAATGATGCCCTTTTGCAAAGCCAAGCTGCATCTATTAAAAATCTAGAGTTACAAATGGGACAAATAGCCAACGATATATCTAGGCAACCGAAAGGAACCCTCCCTAGCAACACAGAAATACCAATTCAAGGAGGGAGCTCAGGAAAAGAAAAGTGTCAAGCAGTGACACTATAA

Protein sequence

MALLEVNAAGSSLQIVHQTAELGFVECGGPGEVSGYCPRKYHEWPQQPIQHLNHHILNQSHSSSSSLPSMESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDISRQPKGTLPSNTEIPIQGGSSGKEKCQAVTL*
Homology
[Close]
BLAST of Csa5G055570 vs. TrEMBL
Match: A0A0A0KMN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G055570 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 3.4e-72
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1 

Query: 1   MALLEVNAAGSSLQIVHQTAELGFVECGGPGEVSGYCPRKYHEWPQQPIQHLNHHILNQS 60
           MALLEVNAAGSSLQIVHQTAELGFVECGGPGEVSGYCPRKYHEWPQQPIQHLNHHILNQS
Sbjct: 1   MALLEVNAAGSSLQIVHQTAELGFVECGGPGEVSGYCPRKYHEWPQQPIQHLNHHILNQS 60

Query: 61  HSSSSSLPSMESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDISRQPKGTLPSNTEI 120
           HSSSSSLPSMESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDISRQPKGTLPSNTEI
Sbjct: 61  HSSSSSLPSMESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDISRQPKGTLPSNTEI 120

Query: 121 PIQGGSSGKEKCQAVTL 138
           PIQGGSSGKEKCQAVTL
Sbjct: 121 PIQGGSSGKEKCQAVTL 137

[Close]
BLAST of Csa5G055570 vs. TrEMBL
Match: A0A0A0KN83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G403040 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 8.3e-18
Identity = 48/68 (70.59%), Postives = 57/68 (83.82%), Query Frame = 1 

Query: 70  MESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDISRQPKGTLPSNTEIPIQGGSSGK 129
           ME+LF+EYMQRNDALLQSQA+SIKNLELQ+GQ+AND+S +PKG L  NT+ PIQ G S  
Sbjct: 48  MEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKGALLCNTKTPIQRGGSSN 107

Query: 130 EKCQAVTL 138
           +K Q VTL
Sbjct: 108 KKSQLVTL 115

[Close]
BLAST of Csa5G055570 vs. TrEMBL
Match: A0A061EW79_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024420 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-09
Identity = 33/70 (47.14%), Postives = 51/70 (72.86%), Query Frame = 1 

Query: 68  PSMESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDISRQPKGTLPSNTEIPIQGGSS 127
           PSME +F ++M + +A +Q+QA SI+NLE+Q+GQ+A+ ++ +P+G LPS+TE        
Sbjct: 244 PSMEDIFMQFMTKTNAFIQNQATSIRNLEIQVGQLASALNIRPQGILPSDTE--PNPRRE 303

Query: 128 GKEKCQAVTL 138
           GKE C A+TL
Sbjct: 304 GKEHCMAITL 311

[Close]
BLAST of Csa5G055570 vs. TrEMBL
Match: A0A061G9E9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_027580 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.9e-08
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 1 

Query: 68  PSMESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDISRQPKGTLPSNTEIPIQGGSS 127
           P ME +F +YM + DA +QSQ  SI+NLE Q+GQ+AN ++ +P GTLPS+ E      + 
Sbjct: 66  PLMEDMFMQYMTKIDAFIQSQTTSIRNLEAQVGQLANALNNKPHGTLPSDNE--PNSKTE 125

Query: 128 GKEKCQAVTL 138
           GKE  + + L
Sbjct: 126 GKEHYKVINL 133

[Close]
BLAST of Csa5G055570 vs. TrEMBL
Match: A0A061FVX6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_012596 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.7e-08
Identity = 30/67 (44.78%), Postives = 47/67 (70.15%), Query Frame = 1 

Query: 71  ESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDISRQPKGTLPSNTEIPIQGGSSGKE 130
           E    +Y+ +NDA++QS +AS++NL+ Q+GQ+AN I+ +P+  LPS+T++       GKE
Sbjct: 212 EEFLLQYISKNDAIIQSYSASLRNLKTQVGQLANSINNRPQCALPSDTQV----NPKGKE 271

Query: 131 KCQAVTL 138
            C AVTL
Sbjct: 272 HCNAVTL 274

[Close]
BLAST of Csa5G055570 vs. NCBI nr
Match: gi|700194490|gb|KGN49667.1| (hypothetical protein Csa_5G055570 [Cucumis sativus])

HSP 1 Score: 278.9 bits (712), Expect = 4.9e-72
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1 

Query: 1   MALLEVNAAGSSLQIVHQTAELGFVECGGPGEVSGYCPRKYHEWPQQPIQHLNHHILNQS 60
           MALLEVNAAGSSLQIVHQTAELGFVECGGPGEVSGYCPRKYHEWPQQPIQHLNHHILNQS
Sbjct: 1   MALLEVNAAGSSLQIVHQTAELGFVECGGPGEVSGYCPRKYHEWPQQPIQHLNHHILNQS 60

Query: 61  HSSSSSLPSMESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDISRQPKGTLPSNTEI 120
           HSSSSSLPSMESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDISRQPKGTLPSNTEI
Sbjct: 61  HSSSSSLPSMESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDISRQPKGTLPSNTEI 120

Query: 121 PIQGGSSGKEKCQAVTL 138
           PIQGGSSGKEKCQAVTL
Sbjct: 121 PIQGGSSGKEKCQAVTL 137

[Close]
BLAST of Csa5G055570 vs. NCBI nr
Match: gi|700195831|gb|KGN51008.1| (hypothetical protein Csa_5G403040 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17
Identity = 48/68 (70.59%), Postives = 57/68 (83.82%), Query Frame = 1 

Query: 70  MESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDISRQPKGTLPSNTEIPIQGGSSGK 129
           ME+LF+EYMQRNDALLQSQA+SIKNLELQ+GQ+AND+S +PKG L  NT+ PIQ G S  
Sbjct: 48  MEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKGALLCNTKTPIQRGGSSN 107

Query: 130 EKCQAVTL 138
           +K Q VTL
Sbjct: 108 KKSQLVTL 115

[Close]
BLAST of Csa5G055570 vs. NCBI nr
Match: gi|823162076|ref|XP_012480946.1| (PREDICTED: uncharacterized protein LOC105795835 [Gossypium raimondii])

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 38/79 (48.10%), Postives = 57/79 (72.15%), Query Frame = 1 

Query: 59  QSHSSSSSLPSMESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDISRQPKGTLPSNT 118
           Q    SSS PS+E L++E+M +ND +++SQ AS++ LE Q+G+I N I+ +P+G LPS+T
Sbjct: 94  QQGQPSSSSPSIEDLWKEFMAKNDFVIESQVASLRALENQVGEIVNAINLRPQGALPSDT 153

Query: 119 EIPIQGGSSGKEKCQAVTL 138
           E      S GKE+C+A+TL
Sbjct: 154 E---NFRSQGKEQCKAITL 169

[Close]
BLAST of Csa5G055570 vs. NCBI nr
Match: gi|985470850|ref|XP_015381091.1| (PREDICTED: uncharacterized protein LOC107174587 [Citrus sinensis])

HSP 1 Score: 72.8 bits (177), Expect = 5.3e-10
Identity = 34/75 (45.33%), Postives = 56/75 (74.67%), Query Frame = 1 

Query: 63  SSSSLPSMESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDISRQPKGTLPSNTEIPI 122
           ++  L S+E+L ++Y+ +N+A++QS AAS++NLE Q+GQ+A  +S +P+G+LPSNTE P 
Sbjct: 103 NNDQLRSLEALIKDYIVKNEAVVQSHAASLRNLENQIGQLATAVSNRPQGSLPSNTENPR 162

Query: 123 QGGSSGKEKCQAVTL 138
           +    GKE C+ + L
Sbjct: 163 R---EGKEHCKVINL 174

[Close]
BLAST of Csa5G055570 vs. NCBI nr
Match: gi|985438230|ref|XP_015383504.1| (PREDICTED: uncharacterized protein LOC107176019 [Citrus sinensis])

HSP 1 Score: 72.4 bits (176), Expect = 7.0e-10
Identity = 39/93 (41.94%), Postives = 57/93 (61.29%), Query Frame = 1 

Query: 45  PQQPIQHLNHHILNQSHSSSSSLPSMESLFQEYMQRNDALLQSQAASIKNLELQMGQIAN 104
           PQ P  H       Q H S   + S+E L +EY+ +N+A++QSQA S++NLE QMGQ+A 
Sbjct: 127 PQPPGFHQQSQ--GQKHISQDPITSLEVLIKEYIAKNEAIVQSQAVSLRNLENQMGQLAT 186

Query: 105 DISRQPKGTLPSNTEIPIQGGSSGKEKCQAVTL 138
            +S + +G+LPSNTE         KE C+ ++L
Sbjct: 187 TMSSRTQGSLPSNTE---DHRRESKEHCKVISL 214

The following BLAST results are available for this feature:
BLAST of Csa5G055570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMN3_CUCSA3.4e-72100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G055570 PE=4 SV=1[more]
A0A0A0KN83_CUCSA8.3e-1870.59Uncharacterized protein OS=Cucumis sativus GN=Csa_5G403040 PE=4 SV=1[more]
A0A061EW79_THECC2.4e-0947.14Uncharacterized protein OS=Theobroma cacao GN=TCM_024420 PE=4 SV=1[more]
A0A061G9E9_THECC5.9e-0845.71Uncharacterized protein OS=Theobroma cacao GN=TCM_027580 PE=4 SV=1[more]
A0A061FVX6_THECC7.7e-0844.78Uncharacterized protein OS=Theobroma cacao GN=TCM_012596 PE=4 SV=1[more]
BLAST of Csa5G055570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194490|gb|KGN49667.1|4.9e-72100.00hypothetical protein Csa_5G055570 [Cucumis sativus][more]
gi|700195831|gb|KGN51008.1|1.2e-1770.59hypothetical protein Csa_5G403040 [Cucumis sativus][more]
gi|823162076|ref|XP_012480946.1|1.1e-1048.10PREDICTED: uncharacterized protein LOC105795835 [Gossypium raimondii][more]
gi|985470850|ref|XP_015381091.1|5.3e-1045.33PREDICTED: uncharacterized protein LOC107174587 [Citrus sinensis][more]
gi|985438230|ref|XP_015383504.1|7.0e-1041.94PREDICTED: uncharacterized protein LOC107176019 [Citrus sinensis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G055570.1Csa5G055570.1mRNA