Csa5G054060 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G054060
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionProtein RALF-like 28; contains IPR008801 (Rapid ALkalinization Factor)
LocationChr5 : 1757914 .. 1758451 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACCCATTCCCTCGTTCCTTTCACCCTTCATTCAAAATAAAATTTGAAGAATAGAAAGGTCAATACCAAAAAAAGGTTAAAATGGCAGGCAACACCAACAAAACCCTTGCTATTGTGATGGTTGCTATGATCATGGTTTGTTCATTGATGGAAAACCCAACGAACGCAACCTCTCTCGATTATGGTGCCATTGGTAAAGGAGACGCAAGATGTAAAGATGGTAAATGTGAAATATTAGGAGATCCAGCCAATAATTATACAAGAGGATGTGAGCCTGAAGAACACTGTAGATCTGGATCACCTGGTCAATGATTCACAACATTTGCCTTCTACATCTCTATTCCACCATTCTATATCCTATCTCTCTTCCAATTATGACCATGGTGTAAAACAAGTGCATGTCATTCATTCATATATGGTATTGACCGGACATTTCTTTGATATTTAATTTATTAATTCAATGGTTTTATTAATATGTTGGATTTGTTATATCTTCCATTTCTTTGCGTATGTTTCTTAATATTCTTTTCAATTTTC

mRNA sequence

ATGGCAGGCAACACCAACAAAACCCTTGCTATTGTGATGGTTGCTATGATCATGGTTTGTTCATTGATGGAAAACCCAACGAACGCAACCTCTCTCGATTATGGTGCCATTGGTAAAGGAGACGCAAGATGTAAAGATGGTAAATGTGAAATATTAGGAGATCCAGCCAATAATTATACAAGAGGATGTGAGCCTGAAGAACACTGTAGATCTGGATCACCTGGTCAATGA

Coding sequence (CDS)

ATGGCAGGCAACACCAACAAAACCCTTGCTATTGTGATGGTTGCTATGATCATGGTTTGTTCATTGATGGAAAACCCAACGAACGCAACCTCTCTCGATTATGGTGCCATTGGTAAAGGAGACGCAAGATGTAAAGATGGTAAATGTGAAATATTAGGAGATCCAGCCAATAATTATACAAGAGGATGTGAGCCTGAAGAACACTGTAGATCTGGATCACCTGGTCAATGA

Protein sequence

MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYTRGCEPEEHCRSGSPGQ*
Homology
[Close]
BLAST of Csa5G054060 vs. TrEMBL
Match: A0A0A0KLD0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G054060 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.2e-37
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

Query: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT 60
          MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT
Sbjct: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT 60

Query: 61 RGCEPEEHCRSGSPGQ 77
          RGCEPEEHCRSGSPGQ
Sbjct: 61 RGCEPEEHCRSGSPGQ 76

[Close]
BLAST of Csa5G054060 vs. TrEMBL
Match: A0A0A0KJT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511800 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 5.1e-33
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = 1 

Query: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT 60
          MAGNTNKTL I+M+AMIM CSL+ENPTNATSL YG IGKGDARCKDGKCEILGDPANNYT
Sbjct: 1  MAGNTNKTLVILMIAMIMACSLIENPTNATSLGYGVIGKGDARCKDGKCEILGDPANNYT 60

Query: 61 RGCEPEEHCRSGSPG 76
          RGCEPEEHCRSGS G
Sbjct: 61 RGCEPEEHCRSGSSG 75

[Close]
BLAST of Csa5G054060 vs. TrEMBL
Match: A0A0D2SKN2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G272100 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-06
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 1 

Query: 3  GNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGD--ARCKDGKCEILGDPANNYT 62
          G   K + + + AM++   LMEN  NA +L+YGAI +GD    C+ G    + +PAN Y 
Sbjct: 2  GVEKKMMVVWICAMVVSSMLMENGANAENLNYGAIERGDMPKPCRPGTLNCVPEPANKYD 61

Query: 63 RGCEPEEHCRSG 73
          RGC   E CR+G
Sbjct: 62 RGCSRLEKCRNG 73

[Close]
BLAST of Csa5G054060 vs. TAIR10
Match: AT4G11510.1 (AT4G11510.1 ralf-like 28)

HSP 1 Score: 46.6 bits (109), Expect = 8.0e-06
Identity = 26/73 (35.62%), Postives = 34/73 (46.58%), Query Frame = 1 

Query: 7  KTLAIVMVAMIMVCSLMENPTN---ATSLDYGAIGKGDAR--CKDGKCEILGDPANNYTR 66
          +T   ++VAM + C  + N  N   A  + Y  +G+GD +  C  G C     PAN Y R
Sbjct: 6  ETKRFMVVAMFIACVFISNNMNVAVANEIGYPGMGRGDRQPGCDHGNCPP-DQPANPYHR 65

Query: 67 GCEPEEHCRSGSP 75
          GCE  + CR   P
Sbjct: 66 GCEKSKRCRGPDP 77

[Close]
BLAST of Csa5G054060 vs. NCBI nr
Match: gi|700194487|gb|KGN49664.1| (hypothetical protein Csa_5G054060 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 1.7e-37
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

Query: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT 60
          MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT
Sbjct: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT 60

Query: 61 RGCEPEEHCRSGSPGQ 77
          RGCEPEEHCRSGSPGQ
Sbjct: 61 RGCEPEEHCRSGSPGQ 76

[Close]
BLAST of Csa5G054060 vs. NCBI nr
Match: gi|700193860|gb|KGN49064.1| (hypothetical protein Csa_6G511800 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 7.3e-33
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = 1 

Query: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT 60
          MAGNTNKTL I+M+AMIM CSL+ENPTNATSL YG IGKGDARCKDGKCEILGDPANNYT
Sbjct: 1  MAGNTNKTLVILMIAMIMACSLIENPTNATSLGYGVIGKGDARCKDGKCEILGDPANNYT 60

Query: 61 RGCEPEEHCRSGSPG 76
          RGCEPEEHCRSGS G
Sbjct: 61 RGCEPEEHCRSGSSG 75

[Close]
BLAST of Csa5G054060 vs. NCBI nr
Match: gi|763777655|gb|KJB44778.1| (hypothetical protein B456_007G272100 [Gossypium raimondii])

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-06
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 1 

Query: 3  GNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGD--ARCKDGKCEILGDPANNYT 62
          G   K + + + AM++   LMEN  NA +L+YGAI +GD    C+ G    + +PAN Y 
Sbjct: 2  GVEKKMMVVWICAMVVSSMLMENGANAENLNYGAIERGDMPKPCRPGTLNCVPEPANKYD 61

Query: 63 RGCEPEEHCRSG 73
          RGC   E CR+G
Sbjct: 62 RGCSRLEKCRNG 73

The following BLAST results are available for this feature:
BLAST of Csa5G054060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLD0_CUCSA1.2e-37100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G054060 PE=4 SV=1[more]
A0A0A0KJT5_CUCSA5.1e-3389.33Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511800 PE=4 SV=1[more]
A0A0D2SKN2_GOSRA1.4e-0641.67Uncharacterized protein OS=Gossypium raimondii GN=B456_007G272100 PE=4 SV=1[more]
BLAST of Csa5G054060 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G11510.18.0e-0635.62 ralf-like 28[more]
BLAST of Csa5G054060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194487|gb|KGN49664.1|1.7e-37100.00hypothetical protein Csa_5G054060 [Cucumis sativus][more]
gi|700193860|gb|KGN49064.1|7.3e-3389.33hypothetical protein Csa_6G511800 [Cucumis sativus][more]
gi|763777655|gb|KJB44778.1|2.0e-0641.67hypothetical protein B456_007G272100 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008801RALF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G054060.1Csa5G054060.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU105647CU105647transcribed_cluster
CU108322CU108322transcribed_cluster
CU121044CU121044transcribed_cluster
CU144115CU144115transcribed_cluster
CU168903CU168903transcribed_cluster
CU098583CU098583transcribed_cluster
CU099392CU099392transcribed_cluster
CU099821CU099821transcribed_cluster
CU099860CU099860transcribed_cluster
CU099868CU099868transcribed_cluster
CU099974CU099974transcribed_cluster
CU105659CU105659transcribed_cluster
CU174384CU174384transcribed_cluster
CU100620CU100620transcribed_cluster
CU100281CU100281transcribed_cluster
CU170379CU170379transcribed_cluster
CU092706CU092706transcribed_cluster
CU155578CU155578transcribed_cluster
CU091571CU091571transcribed_cluster
CU099110CU099110transcribed_cluster
CU170643CU170643transcribed_cluster
CU177059CU177059transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008801Rapid ALkalinization FactorPFAMPF05498RALFcoord: 32..70
score: 2.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G054060Cucurbita moschata (Rifu)cmocuB731
Csa5G054060Cucurbita moschata (Rifu)cmocuB735
Csa5G054060Melon (DHL92) v3.5.1cumeB383
Csa5G054060Watermelon (Charleston Gray)cuwcgB407
Csa5G054060Watermelon (97103) v1cuwmB389
Csa5G054060Cucurbita pepo (Zucchini)cpecuB428
Csa5G054060Cucurbita pepo (Zucchini)cpecuB435
Csa5G054060Bottle gourd (USVL1VR-Ls)culsiB370
Csa5G054060Cucumber (Gy14) v2cgybcuB225
Csa5G054060Melon (DHL92) v3.6.1cumedB364
Csa5G054060Silver-seed gourdcarcuB0198
Csa5G054060Silver-seed gourdcarcuB0693
Csa5G054060Watermelon (97103) v2cuwmbB397
Csa5G054060Wax gourdcuwgoB507
Csa5G054060Cucurbita maxima (Rimu)cmacuB741
Csa5G054060Cucurbita maxima (Rimu)cmacuB743