Csa4G665680 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G665680
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionAlkaline phosphatase D; contains IPR018946 (Alkaline phosphatase D-related)
LocationChr4 : 23305249 .. 23305925 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGGCCCTGTAGGTAAACAAATTAAGGTACAACTTAGCTTGGTGATCTTTCGATGATTCTCATCTTCATAATTTGATTTTAATGATGTTTGTATTATATATTTATCCTTCATCAAATATGTTTGTCACCTGAATTTTTCTAGGTTATCCTATTAGATACTAGATATCACCGTGATCCGCTGTTTAGTGATGGAACTATTTTGGGTACTGCTCAATGGACATGGCTGAAGAGGGAGCTTAAGGGGCCAGAGTCGGCAGTAACAATAATTGGGTCATCCATTCAGGTGTCTCAAGCATACTTTGTGTACAAGCCTCTAGCCTGTGCACTTTTTCTGTAAATCTACTCTTACACTCATTTCGCATTAAATCTTATCATGAGAAATCTTATCTTCCTTGGGTAACATAGTGTAGTAGTTGTAAGCTTTATTTTTATGAGTACATGTGACTGGTATTCTACAATTTAGGTTATATCAAATCTTTCTGCAACCACCAGACCGTTGTTCTATTTGGAGTCTTGGGGACGTTTCCCAAAGGAAAGAGATCTCCTTTTCAAGTTGATTGCAGATAGCAAGGTAAAAATCTGTCATGCACACCTCTGATCCTACTTTTTACACAAGCATCATTGCTCTTCAAGGGGACGTTTGGTTAGCTATAAAAAGAATGAGTTTGAGTTG

mRNA sequence

ATGTTCGGCCCTGTAGGTAAACAAATTAAGGTTATCCTATTAGATACTAGATATCACCGTGATCCGCTGTTTAGTGATGGAACTATTTTGGGTACTGCTCAATGGACATGGCTGAAGAGGGAGCTTAAGGGGCCAGAGTCGGCAGTAACAATAATTGGGTCATCCATTCAGGTTATATCAAATCTTTCTGCAACCACCAGACCGTTGTTCTATTTGGAGTCTTGGGGACGTTTCCCAAAGGAAAGAGATCTCCTTTTCAAGTTGATTGCAGATAGCAAGGTAAAAATCTGTCATGCACACCTCTGA

Coding sequence (CDS)

ATGTTCGGCCCTGTAGGTAAACAAATTAAGGTTATCCTATTAGATACTAGATATCACCGTGATCCGCTGTTTAGTGATGGAACTATTTTGGGTACTGCTCAATGGACATGGCTGAAGAGGGAGCTTAAGGGGCCAGAGTCGGCAGTAACAATAATTGGGTCATCCATTCAGGTTATATCAAATCTTTCTGCAACCACCAGACCGTTGTTCTATTTGGAGTCTTGGGGACGTTTCCCAAAGGAAAGAGATCTCCTTTTCAAGTTGATTGCAGATAGCAAGGTAAAAATCTGTCATGCACACCTCTGA

Protein sequence

MFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVISNLSATTRPLFYLESWGRFPKERDLLFKLIADSKVKICHAHL*
Homology
[Close]
BLAST of Csa4G665680 vs. TrEMBL
Match: A0A0A0L3H3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G665680 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 5.5e-51
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVIS 60
           MFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVIS
Sbjct: 1   MFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVIS 60

Query: 61  NLSATTRPLFYLESWGRFPKERDLLFKLIADSKVKICHAHL 102
           NLSATTRPLFYLESWGRFPKERDLLFKLIADSKVKICHAHL
Sbjct: 61  NLSATTRPLFYLESWGRFPKERDLLFKLIADSKVKICHAHL 101

[Close]
BLAST of Csa4G665680 vs. TrEMBL
Match: B9H5Z1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s28090g PE=4 SV=2)

HSP 1 Score: 167.2 bits (422), Expect = 1.1e-38
Identity = 78/93 (83.87%), Postives = 89/93 (95.70%), Query Frame = 1 

Query: 1   MFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVIS 60
           MFGPVG+QIKVILLDTRYHRDPL SDG++LG++QWTWL++EL GP+SA+TIIGSS+QVIS
Sbjct: 186 MFGPVGRQIKVILLDTRYHRDPLRSDGSVLGSSQWTWLEKELNGPKSAITIIGSSVQVIS 245

Query: 61  NLSATTRPLFYLESWGRFPKERDLLFKLIADSK 94
           NLSATTRPLF LESWGRFPKERD LFKLIAD+K
Sbjct: 246 NLSATTRPLFSLESWGRFPKERDRLFKLIADTK 278

[Close]
BLAST of Csa4G665680 vs. TrEMBL
Match: A0A067H322_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013940mg PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.0e-37
Identity = 77/92 (83.70%), Postives = 85/92 (92.39%), Query Frame = 1 

Query: 2   FGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVISN 61
           FGPVG+QIK+ILLDTRYHRDPL SDGTILG+ QWTWL++EL GP SA+TII SSIQVISN
Sbjct: 142 FGPVGRQIKIILLDTRYHRDPLSSDGTILGSTQWTWLEKELNGPSSAITIIVSSIQVISN 201

Query: 62  LSATTRPLFYLESWGRFPKERDLLFKLIADSK 94
           LSATT PLFY+ESWGRFPKERD LF+LIADSK
Sbjct: 202 LSATTGPLFYMESWGRFPKERDRLFQLIADSK 233

[Close]
BLAST of Csa4G665680 vs. TrEMBL
Match: A0A067H0E6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013940mg PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.0e-37
Identity = 77/92 (83.70%), Postives = 85/92 (92.39%), Query Frame = 1 

Query: 2   FGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVISN 61
           FGPVG+QIK+ILLDTRYHRDPL SDGTILG+ QWTWL++EL GP SA+TII SSIQVISN
Sbjct: 142 FGPVGRQIKIILLDTRYHRDPLSSDGTILGSTQWTWLEKELNGPSSAITIIVSSIQVISN 201

Query: 62  LSATTRPLFYLESWGRFPKERDLLFKLIADSK 94
           LSATT PLFY+ESWGRFPKERD LF+LIADSK
Sbjct: 202 LSATTGPLFYMESWGRFPKERDRLFQLIADSK 233

[Close]
BLAST of Csa4G665680 vs. TrEMBL
Match: V4TB34_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10003552mg PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.0e-37
Identity = 77/92 (83.70%), Postives = 85/92 (92.39%), Query Frame = 1 

Query: 2   FGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVISN 61
           FGPVG+QIK+ILLDTRYHRDPL SDGTILG+ QWTWL++EL GP SA+TII SSIQVISN
Sbjct: 204 FGPVGRQIKIILLDTRYHRDPLSSDGTILGSTQWTWLEKELNGPSSAITIIVSSIQVISN 263

Query: 62  LSATTRPLFYLESWGRFPKERDLLFKLIADSK 94
           LSATT PLFY+ESWGRFPKERD LF+LIADSK
Sbjct: 264 LSATTGPLFYMESWGRFPKERDRLFQLIADSK 295

[Close]
BLAST of Csa4G665680 vs. TAIR10
Match: AT5G42370.2 (AT5G42370.2 Calcineurin-like metallo-phosphoesterase superfamily protein)

HSP 1 Score: 147.5 bits (371), Expect = 4.4e-36
Identity = 68/92 (73.91%), Postives = 77/92 (83.70%), Query Frame = 1 

Query: 2   FGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVISN 61
           +GP  +++KVI+LDTRYHRDPL SDG+ILG  QW WL+ EL GP S +TIIGSS+QVISN
Sbjct: 168 YGPPNRKVKVIVLDTRYHRDPLRSDGSILGDTQWDWLENELSGPRSEITIIGSSVQVISN 227

Query: 62  LSATTRPLFYLESWGRFPKERDLLFKLIADSK 94
           LSATT PLFY+ESWGRFPKER  LFKLIAD+K
Sbjct: 228 LSATTGPLFYMESWGRFPKERKRLFKLIADTK 259

[Close]
BLAST of Csa4G665680 vs. NCBI nr
Match: gi|700200406|gb|KGN55564.1| (hypothetical protein Csa_4G665680 [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 7.8e-51
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVIS 60
           MFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVIS
Sbjct: 1   MFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVIS 60

Query: 61  NLSATTRPLFYLESWGRFPKERDLLFKLIADSKVKICHAHL 102
           NLSATTRPLFYLESWGRFPKERDLLFKLIADSKVKICHAHL
Sbjct: 61  NLSATTRPLFYLESWGRFPKERDLLFKLIADSKVKICHAHL 101

[Close]
BLAST of Csa4G665680 vs. NCBI nr
Match: gi|778697343|ref|XP_011654300.1| (PREDICTED: uncharacterized protein LOC101210375 isoform X2 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 9.9e-46
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 1 

Query: 1   MFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVIS 60
           MFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVIS
Sbjct: 186 MFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVIS 245

Query: 61  NLSATTRPLFYLESWGRFPKERDLLFKLIADSKVK 96
           NLSATTRPLFYLESWGRFPKERDLLFKLIADSK K
Sbjct: 246 NLSATTRPLFYLESWGRFPKERDLLFKLIADSKRK 280

[Close]
BLAST of Csa4G665680 vs. NCBI nr
Match: gi|778697340|ref|XP_011654299.1| (PREDICTED: uncharacterized protein LOC101210375 isoform X1 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 9.9e-46
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 1 

Query: 1   MFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVIS 60
           MFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVIS
Sbjct: 186 MFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVIS 245

Query: 61  NLSATTRPLFYLESWGRFPKERDLLFKLIADSKVK 96
           NLSATTRPLFYLESWGRFPKERDLLFKLIADSK K
Sbjct: 246 NLSATTRPLFYLESWGRFPKERDLLFKLIADSKRK 280

[Close]
BLAST of Csa4G665680 vs. NCBI nr
Match: gi|659105243|ref|XP_008453047.1| (PREDICTED: uncharacterized protein LOC103493872 isoform X1 [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 1.3e-45
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 1 

Query: 1   MFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVIS 60
           MFGP+GKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVIS
Sbjct: 186 MFGPIGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVIS 245

Query: 61  NLSATTRPLFYLESWGRFPKERDLLFKLIADSKVK 96
           NLSATTRPLFYLESWGRFPKERDLLFKLIADSK K
Sbjct: 246 NLSATTRPLFYLESWGRFPKERDLLFKLIADSKRK 280

[Close]
BLAST of Csa4G665680 vs. NCBI nr
Match: gi|659105247|ref|XP_008453048.1| (PREDICTED: uncharacterized protein LOC103493872 isoform X2 [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 1.3e-45
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 1 

Query: 1   MFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVIS 60
           MFGP+GKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVIS
Sbjct: 186 MFGPIGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVIS 245

Query: 61  NLSATTRPLFYLESWGRFPKERDLLFKLIADSKVK 96
           NLSATTRPLFYLESWGRFPKERDLLFKLIADSK K
Sbjct: 246 NLSATTRPLFYLESWGRFPKERDLLFKLIADSKRK 280

The following BLAST results are available for this feature:
BLAST of Csa4G665680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3H3_CUCSA5.5e-51100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G665680 PE=4 SV=1[more]
B9H5Z1_POPTR1.1e-3883.87Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s28090g PE=4 SV=2[more]
A0A067H322_CITSI2.0e-3783.70Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013940mg PE=4 SV=1[more]
A0A067H0E6_CITSI2.0e-3783.70Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013940mg PE=4 SV=1[more]
V4TB34_9ROSI2.0e-3783.70Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10003552mg PE=... [more]
BLAST of Csa4G665680 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G42370.24.4e-3673.91 Calcineurin-like metallo-phosphoesterase superfamily protein[more]
BLAST of Csa4G665680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200406|gb|KGN55564.1|7.8e-51100.00hypothetical protein Csa_4G665680 [Cucumis sativus][more]
gi|778697343|ref|XP_011654300.1|9.9e-4698.95PREDICTED: uncharacterized protein LOC101210375 isoform X2 [Cucumis sativus][more]
gi|778697340|ref|XP_011654299.1|9.9e-4698.95PREDICTED: uncharacterized protein LOC101210375 isoform X1 [Cucumis sativus][more]
gi|659105243|ref|XP_008453047.1|1.3e-4597.89PREDICTED: uncharacterized protein LOC103493872 isoform X1 [Cucumis melo][more]
gi|659105247|ref|XP_008453048.1|1.3e-4597.89PREDICTED: uncharacterized protein LOC103493872 isoform X2 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018946Alk_phosphatase_PhoD-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU112084cucumber EST collection version 3.0transcribed_cluster
CU129327cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G665680.1Csa4G665680.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU129327CU129327transcribed_cluster
CU112084CU112084transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018946Alkaline phosphatase D-relatedPFAMPF09423PhoDcoord: 7..94
score: 1.
NoneNo IPR availablePANTHERPTHR33987FAMILY NOT NAMEDcoord: 1..95
score: 1.5
NoneNo IPR availablePANTHERPTHR33987:SF1CALCINEURIN-LIKE METALLO-PHOSPHOESTERASE-LIKE PROTEINcoord: 1..95
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G665680Cla000528Watermelon (97103) v1cuwmB284
Csa4G665680CSPI04G27510Wild cucumber (PI 183967)cpicuB181
Csa4G665680CmoCh09G000030Cucurbita moschata (Rifu)cmocuB015
Csa4G665680Carg08585Silver-seed gourdcarcuB0113
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G665680Watermelon (97103) v2cuwmbB281
Csa4G665680Wax gourdcuwgoB416
Csa4G665680Wax gourdcuwgoB419
Csa4G665680Cucurbita moschata (Rifu)cmocuB469
Csa4G665680Melon (DHL92) v3.5.1cumeB313
Csa4G665680Watermelon (97103) v1cuwmB352
Csa4G665680Cucurbita pepo (Zucchini)cpecuB571
Csa4G665680Cucurbita pepo (Zucchini)cpecuB790
Csa4G665680Cucumber (Gy14) v2cgybcuB166
Csa4G665680Melon (DHL92) v3.6.1cumedB298
Csa4G665680Silver-seed gourdcarcuB1061