Csa4G664280 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G664280
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 23093878 .. 23094117 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTTCAATTTAGAGTGGGCTTATGGAGGGGGTGAAGCCCACATGGGGATGAGGCGAAAAGGGATCGCCGAAAAGCGGAAGGGGAAATCTCAAATCACTTTCTATCTTAGCCGCAACCCACAGCATCTAGTTGTCTCCAATGAGGAAATGCCAGGTGTCGAGCCAGAGGATGATGTAGTGTATTTGGGTGCGACCGTCAACGGACCCAAAAGGACAAGAGAGAGGGATGAACGGTGA

mRNA sequence

ATGGGCTTCAATTTAGAGTGGGCTTATGGAGGGGGTGAAGCCCACATGGGGATGAGGCGAAAAGGGATCGCCGAAAAGCGGAAGGGGAAATCTCAAATCACTTTCTATCTTAGCCGCAACCCACAGCATCTAGTTGTCTCCAATGAGGAAATGCCAGGTGTCGAGCCAGAGGATGATGTAGTGTATTTGGGTGCGACCGTCAACGGACCCAAAAGGACAAGAGAGAGGGATGAACGGTGA

Coding sequence (CDS)

ATGGGCTTCAATTTAGAGTGGGCTTATGGAGGGGGTGAAGCCCACATGGGGATGAGGCGAAAAGGGATCGCCGAAAAGCGGAAGGGGAAATCTCAAATCACTTTCTATCTTAGCCGCAACCCACAGCATCTAGTTGTCTCCAATGAGGAAATGCCAGGTGTCGAGCCAGAGGATGATGTAGTGTATTTGGGTGCGACCGTCAACGGACCCAAAAGGACAAGAGAGAGGGATGAACGGTGA

Protein sequence

MGFNLEWAYGGGEAHMGMRRKGIAEKRKGKSQITFYLSRNPQHLVVSNEEMPGVEPEDDVVYLGATVNGPKRTRERDER*
Homology
[Close]
BLAST of Csa4G664280 vs. TrEMBL
Match: A0A0A0L0S4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664280 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MGFNLEWAYGGGEAHMGMRRKGIAEKRKGKSQITFYLSRNPQHLVVSNEEMPGVEPEDDV 60
          MGFNLEWAYGGGEAHMGMRRKGIAEKRKGKSQITFYLSRNPQHLVVSNEEMPGVEPEDDV
Sbjct: 1  MGFNLEWAYGGGEAHMGMRRKGIAEKRKGKSQITFYLSRNPQHLVVSNEEMPGVEPEDDV 60

Query: 61 VYLGATVNGPKRTRERDER 80
          VYLGATVNGPKRTRERDER
Sbjct: 61 VYLGATVNGPKRTRERDER 79

[Close]
BLAST of Csa4G664280 vs. NCBI nr
Match: gi|700200362|gb|KGN55520.1| (hypothetical protein Csa_4G664280 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.6e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MGFNLEWAYGGGEAHMGMRRKGIAEKRKGKSQITFYLSRNPQHLVVSNEEMPGVEPEDDV 60
          MGFNLEWAYGGGEAHMGMRRKGIAEKRKGKSQITFYLSRNPQHLVVSNEEMPGVEPEDDV
Sbjct: 1  MGFNLEWAYGGGEAHMGMRRKGIAEKRKGKSQITFYLSRNPQHLVVSNEEMPGVEPEDDV 60

Query: 61 VYLGATVNGPKRTRERDER 80
          VYLGATVNGPKRTRERDER
Sbjct: 61 VYLGATVNGPKRTRERDER 79

The following BLAST results are available for this feature:
BLAST of Csa4G664280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0S4_CUCSA1.1e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664280 PE=4 SV=1[more]
BLAST of Csa4G664280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200362|gb|KGN55520.1|1.6e-38100.00hypothetical protein Csa_4G664280 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G664280.1Csa4G664280.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G664280CSPI04G27090Wild cucumber (PI 183967)cpicuB181
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G664280Silver-seed gourdcarcuB0113
Csa4G664280Silver-seed gourdcarcuB0388
Csa4G664280Watermelon (97103) v2cuwmbB280
Csa4G664280Wax gourdcuwgoB419
Csa4G664280Cucumber (Chinese Long) v2cucuB151
Csa4G664280Cucumber (Gy14) v1cgycuB387
Csa4G664280Cucurbita maxima (Rimu)cmacuB024
Csa4G664280Cucurbita maxima (Rimu)cmacuB464
Csa4G664280Cucurbita moschata (Rifu)cmocuB015
Csa4G664280Cucurbita moschata (Rifu)cmocuB452
Csa4G664280Melon (DHL92) v3.5.1cumeB313
Csa4G664280Watermelon (Charleston Gray)cuwcgB280
Csa4G664280Watermelon (97103) v1cuwmB350
Csa4G664280Cucurbita pepo (Zucchini)cpecuB572
Csa4G664280Cucurbita pepo (Zucchini)cpecuB787
Csa4G664280Bottle gourd (USVL1VR-Ls)culsiB284
Csa4G664280Cucumber (Gy14) v2cgybcuB166
Csa4G664280Melon (DHL92) v3.6.1cumedB298