Csa4G658520 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G658520
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Pentatricopeptide repeat-containing protein, putative
Location	Chr4 : 22946544 .. 22947133 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGATTGGGGTGAGATTCGAGAGATTTGATGATACCTTGAATCTTTTGGATCAAGCCAGTTCACAAGGGATTGAACTTGATGTAGTTATAATTAATACAATCATGCACAAAGCTTGTGAAAAGGTAGCCCTTCTGAGTAAAAAATTTCAAACAGCAGTGTTTATAGCCAAATACGTTAATAACGACACTTCTCAATGCACTTCATCAACTGTTTAAATTAATGTAAATCTTTTCAATTACGTTGGACCTCGACACATTATCAACTCATTTGATATTCTTGGAAATTTTGGTATTCCAAACCATCATTTATTATTGTATGCATTTGTGAATAGTAATAAATGTGCTTAATGATTTCTATTCTGATTTCAGCTCATCACTCTTTCTCTCTTTTTTTTTTAAGAAATGGATGTTAGGTAAGGATTGATGTGATTGCATTTGTTGTTGAACCGCGAAAAGATTCTGCCCGACCCTCCGACGTGCCATTGAGTCTTCCCTTTAACCTTGGTGGTTATCACAGCACCACCATGGAGTTGGAAGCAATGCAAGTACATGTGTATCTTATGCAAAGAAGACGACGCCTCTCCTAA

mRNA sequence

ATGCAGATTGGGGTGAGATTCGAGAGATTTGATGATACCTTGAATCTTTTGGATCAAGCCAGTTCACAAGGGATTGAACTTGATGTAGTTATAATTAATACAATCATGCACAAAGCTTGTGAAAAGGTAAGGATTGATGTGATTGCATTTGTTGTTGAACCGCGAAAAGATTCTGCCCGACCCTCCGACGTGCCATTGAGTCTTCCCTTTAACCTTGGTGGTTATCACAGCACCACCATGGAGTTGGAAGCAATGCAAGTACATGTGTATCTTATGCAAAGAAGACGACGCCTCTCCTAA

Coding sequence (CDS)

ATGCAGATTGGGGTGAGATTCGAGAGATTTGATGATACCTTGAATCTTTTGGATCAAGCCAGTTCACAAGGGATTGAACTTGATGTAGTTATAATTAATACAATCATGCACAAAGCTTGTGAAAAGGTAAGGATTGATGTGATTGCATTTGTTGTTGAACCGCGAAAAGATTCTGCCCGACCCTCCGACGTGCCATTGAGTCTTCCCTTTAACCTTGGTGGTTATCACAGCACCACCATGGAGTTGGAAGCAATGCAAGTACATGTGTATCTTATGCAAAGAAGACGACGCCTCTCCTAA

Protein sequence

MQIGVRFERFDDTLNLLDQASSQGIELDVVIINTIMHKACEKVRIDVIAFVVEPRKDSARPSDVPLSLPFNLGGYHSTTMELEAMQVHVYLMQRRRRLS*

Homology

[Close]

BLAST of Csa4G658520 vs. Swiss-Prot
Match: PP126_ARATH (Pentatricopeptide repeat-containing protein At1g76280 OS=Arabidopsis thaliana GN=At1g76280 PE=2 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-07
Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 1


Query: 1   MQIGVRFERFDDTLNLLDQASSQGIELDVVIINTIMHKACEKVRIDVIAFVVEP-RKDSA 60
           M+I +    F++ LNLLDQA+ + I LDV+  NTI+ KA EK  IDVI ++VE   ++  
Sbjct: 602 MKILLNDANFEEALNLLDQAALEEIHLDVLSYNTILRKAFEKGMIDVIEYIVEQMHREKV 661

Query: 61  RPSDVPLSLPFNL---GGYHSTTME 82
            P        F+     GYH+T +E
Sbjct: 662 NPDPTTCHYVFSCYVEKGYHATAIE 686

[Close]

BLAST of Csa4G658520 vs. TrEMBL
Match: A0A0A0L4J3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G658520 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.2e-47
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1


Query: 1   MQIGVRFERFDDTLNLLDQASSQGIELDVVIINTIMHKACEKVRIDVIAFVVEPRKDSAR 60
           MQIGVRFERFDDTLNLLDQASSQGIELDVVIINTIMHKACEKVRIDVIAFVVEPRKDSAR
Sbjct: 1   MQIGVRFERFDDTLNLLDQASSQGIELDVVIINTIMHKACEKVRIDVIAFVVEPRKDSAR 60

Query: 61  PSDVPLSLPFNLGGYHSTTMELEAMQVHVYLMQRRRRLS 100
           PSDVPLSLPFNLGGYHSTTMELEAMQVHVYLMQRRRRLS
Sbjct: 61  PSDVPLSLPFNLGGYHSTTMELEAMQVHVYLMQRRRRLS 99

[Close]

BLAST of Csa4G658520 vs. TrEMBL
Match: A0A0A0K7Y4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G291180 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.6e-16
Identity = 55/92 (59.78%), Postives = 63/92 (68.48%), Query Frame = 1


Query: 1   MQIGVRFERFDDTLNLLDQASSQGIELDVVIINTIMHKACEKVRIDVIAFVVEPRKDSAR 60
           ++I + FERFDD LNLLDQASS+GIELDV+I+NTIM KACEK RIDVI F+VE       
Sbjct: 114 VKIVLGFERFDDALNLLDQASSEGIELDVIIMNTIMRKACEKARIDVIEFLVEKMNREKI 173

Query: 61  PSDVP-----LSLPFNLGGYHSTTMELEAMQV 88
           P D        S   NL GYHST M  EA+QV
Sbjct: 174 PPDPSTCQNVFSTYVNL-GYHSTAM--EALQV 202

[Close]

BLAST of Csa4G658520 vs. TrEMBL
Match: A0A0D2M9R8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G118000 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-11
Identity = 42/91 (46.15%), Postives = 63/91 (69.23%), Query Frame = 1


Query: 1   MQIGVRFERFDDTLNLLDQASSQGIELDVVIINTIMHKACEKVRIDVIAFVVE-PRKDSA 60
           M+I + +E FD+ L+L+DQAS +G +LDV++ NTI+ KA EKVRID+I F++E   +D  
Sbjct: 641 MKILLEYENFDEALSLVDQASLEGHQLDVLMYNTILKKASEKVRIDIIEFIIERMHQDKV 700

Query: 61  RPSDVPLSLPFNL---GGYHSTTMELEAMQV 88
           +P  V  +  F+    GG+H+T M  EA+QV
Sbjct: 701 QPDPVTCNYVFSAYVDGGFHNTAM--EALQV 729

[Close]

BLAST of Csa4G658520 vs. TrEMBL
Match: A0A078DEF3_BRANA (BnaA07g32520D protein OS=Brassica napus GN=BnaA07g32520D PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-08
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 1


Query: 1   MQIGVRFERFDDTLNLLDQASSQGIELDVVIINTIMHKACEKVRIDVIAFVVEP-RKDSA 60
           M+I +  E F++ LNLLDQA+S+GI LDV+  NT++ KA EK  IDV+ ++VE  R++  
Sbjct: 628 MKILLNDESFEEALNLLDQAASEGIHLDVLSYNTVLRKAFEKGMIDVVEYIVEQMRREKV 687

Query: 61  RPSDVPLSLPFNL---GGYHSTTME 82
            P        FN     GYH+T +E
Sbjct: 688 NPDPSTCHFVFNCYVEKGYHTTAIE 712

[Close]

BLAST of Csa4G658520 vs. TrEMBL
Match: A0A0D3D135_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-08
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 1


Query: 1   MQIGVRFERFDDTLNLLDQASSQGIELDVVIINTIMHKACEKVRIDVIAFVVEP-RKDSA 60
           M+I +  E F++ LNLLDQA+S+GI LDV+  NT++ KA EK  IDV+ ++VE  R++  
Sbjct: 645 MKILLNDESFEEALNLLDQAASEGIHLDVLSYNTVLRKAFEKGMIDVVEYIVEQMRREKV 704

Query: 61  RPSDVPLSLPFNL---GGYHSTTME 82
            P        FN     GYH+T +E
Sbjct: 705 NPDPSTCHFVFNCYVEKGYHTTGIE 729

[Close]

BLAST of Csa4G658520 vs. TAIR10
Match: AT1G76280.3 (AT1G76280.3 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 57.4 bits (137), Expect = 5.9e-09
Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 1


Query: 1   MQIGVRFERFDDTLNLLDQASSQGIELDVVIINTIMHKACEKVRIDVIAFVVEP-RKDSA 60
           M+I +    F++ LNLLDQA+ + I LDV+  NTI+ KA EK  IDVI ++VE   ++  
Sbjct: 630 MKILLNDANFEEALNLLDQAALEEIHLDVLSYNTILRKAFEKGMIDVIEYIVEQMHREKV 689

Query: 61  RPSDVPLSLPFNL---GGYHSTTME 82
            P        F+     GYH+T +E
Sbjct: 690 NPDPTTCHYVFSCYVEKGYHATAIE 714

[Close]

BLAST of Csa4G658520 vs. NCBI nr
Match: gi|700200334|gb|KGN55492.1| (hypothetical protein Csa_4G658520 [Cucumis sativus])

HSP 1 Score: 196.8 bits (499), Expect = 1.8e-47
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1


Query: 1   MQIGVRFERFDDTLNLLDQASSQGIELDVVIINTIMHKACEKVRIDVIAFVVEPRKDSAR 60
           MQIGVRFERFDDTLNLLDQASSQGIELDVVIINTIMHKACEKVRIDVIAFVVEPRKDSAR
Sbjct: 1   MQIGVRFERFDDTLNLLDQASSQGIELDVVIINTIMHKACEKVRIDVIAFVVEPRKDSAR 60

Query: 61  PSDVPLSLPFNLGGYHSTTMELEAMQVHVYLMQRRRRLS 100
           PSDVPLSLPFNLGGYHSTTMELEAMQVHVYLMQRRRRLS
Sbjct: 61  PSDVPLSLPFNLGGYHSTTMELEAMQVHVYLMQRRRRLS 99

[Close]

BLAST of Csa4G658520 vs. NCBI nr
Match: gi|778726443|ref|XP_011659099.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X2 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 8.0e-16
Identity = 55/92 (59.78%), Postives = 63/92 (68.48%), Query Frame = 1


Query: 1   MQIGVRFERFDDTLNLLDQASSQGIELDVVIINTIMHKACEKVRIDVIAFVVEPRKDSAR 60
           ++I + FERFDD LNLLDQASS+GIELDV+I+NTIM KACEK RIDVI F+VE       
Sbjct: 588 VKIVLGFERFDDALNLLDQASSEGIELDVIIMNTIMRKACEKARIDVIEFLVEKMNREKI 647

Query: 61  PSDVP-----LSLPFNLGGYHSTTMELEAMQV 88
           P D        S   NL GYHST M  EA+QV
Sbjct: 648 PPDPSTCQNVFSTYVNL-GYHSTAM--EALQV 676

[Close]

BLAST of Csa4G658520 vs. NCBI nr
Match: gi|700189214|gb|KGN44447.1| (hypothetical protein Csa_7G291180 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 8.0e-16
Identity = 55/92 (59.78%), Postives = 63/92 (68.48%), Query Frame = 1


Query: 1   MQIGVRFERFDDTLNLLDQASSQGIELDVVIINTIMHKACEKVRIDVIAFVVEPRKDSAR 60
           ++I + FERFDD LNLLDQASS+GIELDV+I+NTIM KACEK RIDVI F+VE       
Sbjct: 114 VKIVLGFERFDDALNLLDQASSEGIELDVIIMNTIMRKACEKARIDVIEFLVEKMNREKI 173

Query: 61  PSDVP-----LSLPFNLGGYHSTTMELEAMQV 88
           P D        S   NL GYHST M  EA+QV
Sbjct: 174 PPDPSTCQNVFSTYVNL-GYHSTAM--EALQV 202

[Close]

BLAST of Csa4G658520 vs. NCBI nr
Match: gi|778726439|ref|XP_004139754.2| (PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X1 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 8.0e-16
Identity = 55/92 (59.78%), Postives = 63/92 (68.48%), Query Frame = 1


Query: 1   MQIGVRFERFDDTLNLLDQASSQGIELDVVIINTIMHKACEKVRIDVIAFVVEPRKDSAR 60
           ++I + FERFDD LNLLDQASS+GIELDV+I+NTIM KACEK RIDVI F+VE       
Sbjct: 644 VKIVLGFERFDDALNLLDQASSEGIELDVIIMNTIMRKACEKARIDVIEFLVEKMNREKI 703

Query: 61  PSDVP-----LSLPFNLGGYHSTTMELEAMQV 88
           P D        S   NL GYHST M  EA+QV
Sbjct: 704 PPDPSTCQNVFSTYVNL-GYHSTAM--EALQV 732

[Close]

BLAST of Csa4G658520 vs. NCBI nr
Match: gi|778726446|ref|XP_011659100.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X3 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 8.0e-16
Identity = 55/92 (59.78%), Postives = 63/92 (68.48%), Query Frame = 1


Query: 1   MQIGVRFERFDDTLNLLDQASSQGIELDVVIINTIMHKACEKVRIDVIAFVVEPRKDSAR 60
           ++I + FERFDD LNLLDQASS+GIELDV+I+NTIM KACEK RIDVI F+VE       
Sbjct: 586 VKIVLGFERFDDALNLLDQASSEGIELDVIIMNTIMRKACEKARIDVIEFLVEKMNREKI 645

Query: 61  PSDVP-----LSLPFNLGGYHSTTMELEAMQV 88
           P D        S   NL GYHST M  EA+QV
Sbjct: 646 PPDPSTCQNVFSTYVNL-GYHSTAM--EALQV 674

The following BLAST results are available for this feature:

BLAST of Csa4G658520 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP126_ARATH	1.1e-07	40.00	Pentatricopeptide repeat-containing protein At1g76280 OS=Arabidopsis thaliana GN...	[more]

BLAST of Csa4G658520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4J3_CUCSA	1.2e-47	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G658520 PE=4 SV=1	[more]
A0A0A0K7Y4_CUCSA	5.6e-16	59.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G291180 PE=4 SV=1	[more]
A0A0D2M9R8_GOSRA	1.9e-11	46.15	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G118000 PE=4 SV=1	[more]
A0A078DEF3_BRANA	1.1e-08	43.53	BnaA07g32520D protein OS=Brassica napus GN=BnaA07g32520D PE=4 SV=1	[more]
A0A0D3D135_BRAOL	1.9e-08	43.53	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]

BLAST of Csa4G658520 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76280.3	5.9e-09	40.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Csa4G658520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200334\|gb\|KGN55492.1\|	1.8e-47	100.00	hypothetical protein Csa_4G658520 [Cucumis sativus]	[more]
gi\|778726443\|ref\|XP_011659099.1\|	8.0e-16	59.78	PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X2 [Cuc...	[more]
gi\|700189214\|gb\|KGN44447.1\|	8.0e-16	59.78	hypothetical protein Csa_7G291180 [Cucumis sativus]	[more]
gi\|778726439\|ref\|XP_004139754.2\|	8.0e-16	59.78	PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X1 [Cuc...	[more]
gi\|778726446\|ref\|XP_011659100.1\|	8.0e-16	59.78	PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X3 [Cuc...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0015996	chlorophyll catabolic process
biological_process	GO:0006744	ubiquinone biosynthetic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005777	peroxisome
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008756	o-succinylbenzoate-CoA ligase activity
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G658520.1	Csa4G658520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..53 score: 6.3
None	No IPR available	PANTHER	PTHR24015:SF450	SUBFAMILY NOT NAMED	coord: 1..53 score: 6.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G658520	CmaCh09G000610	Cucurbita maxima (Rimu)	cmacuB024
Csa4G658520	CmoCh09G000620	Cucurbita moschata (Rifu)	cmocuB015
Csa4G658520	Cp4.1LG06g00270	Cucurbita pepo (Zucchini)	cpecuB787
Csa4G658520	CsGy4G025170	Cucumber (Gy14) v2	cgybcuB166
Csa4G658520	Carg08636	Silver-seed gourd	carcuB0113

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G658520	Cucurbita pepo (Zucchini)	cpecuB572
Csa4G658520	Bottle gourd (USVL1VR-Ls)	culsiB284
Csa4G658520	Melon (DHL92) v3.6.1	cumedB298
Csa4G658520	Silver-seed gourd	carcuB0388
Csa4G658520	Watermelon (97103) v2	cuwmbB280
Csa4G658520	Wax gourd	cuwgoB419
Csa4G658520	Cucumber (Chinese Long) v2	cucuB151
Csa4G658520	Cucumber (Gy14) v1	cgycuB387
Csa4G658520	Cucurbita maxima (Rimu)	cmacuB464
Csa4G658520	Cucurbita moschata (Rifu)	cmocuB452
Csa4G658520	Melon (DHL92) v3.5.1	cumeB313
Csa4G658520	Watermelon (Charleston Gray)	cuwcgB280
Csa4G658520	Watermelon (97103) v1	cuwmB350