Csa4G650170 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G650170
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionThreonine--tRNA ligase; contains IPR018163 (Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain)
LocationChr4 : 22332468 .. 22333447 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACAAAATGAAATTCACCCCTCCAACGACAACCCATGCAAATTCGTGGAGAAATTCTTAACCTGCACCAACAGTCAGTAATTTTCTTAATTAAGAGGCTTTATTTCTTTTTGTAAAAAATGCATCTGGTTGAGCGCAGCTTTGGGTTGAGCAAAATACTTGTTTCGTAGGCTATTTGCTAAATTATGTTTGAGTATTTTGAGTGCAGAATACGGCATCTTGGTGATGTACCATAAATTACACTCTCTTACCTCACCATTCTTTCGAACTACTTTCCCAGGTTTCCAGCCTCTTCAGGTGATATTGTTTCTTCCGTTTCCTTTGTTATTATTTTGAAATTTCTTTCATATTTTGGTGGGTTTGTATATTATCAGCGTTTTCTTTTGTTCTTTCTCACATTTTGGCTGTTTATTTGGGTTCTAATTTGATTTTTTTTATGCTTAATGAAGGATTTTCTTAATGGAGTTCCCCTGGGTCAAGTTTAGGTTTGAACTAGGCAGGAGTTTCATTGCTTAAACAGGGTGTTTCTAACCTAGATGGGGTTTTCTGAATTCCATTTTGCATCTTGGAGATAAGATTGAATGCGGACTTTAGGTTTCAACTGCTTGATATATGCTTCTCGAATTGCAGTGTGCTCATGTAATGGCCATGGCTGTTCAGAAGCTCTTTCCAGATGCTAAAGTGACAATTGGACCATGGATTGAAAATGGGTTTTGCTATGATTTTGATATAGAGCCCTTGGGAGATAAAGATTTGATGAAAATCAAGAAGGAGATGGTTGGTATTATACCAAATCAATGAGCATTGAAGTCACTGGTTTTCTTTTTCTTTATTATTTTACATCACATGATTTGGAATATATGCATTAGTCTATGCTTTTAGTATGTGGGGTTTATTTTTCATATCTTCTCTAGGAACGCATTATCAGCACAAACTTACCACTTGTAAGAGAAGAAGTTTCAAGGGATAAAGCTTAA

mRNA sequence

ATGGCACAAAATGAAATTCACCCCTCCAACGACAACCCATGCAAATTCGTGGAGAAATTCTTAACCTGCACCAACAAATACGGCATCTTGGTGATGTACCATAAATTACACTCTCTTACCTCACCATTCTTTCGAACTACTTTCCCAGGTTTCCAGCCTCTTCAGTGTGCTCATGTAATGGCCATGGCTGTTCAGAAGCTCTTTCCAGATGCTAAAGTGACAATTGGACCATGGATTGAAAATGGGTTTTGCTATGATTTTGATATAGAGCCCTTGGGAGATAAAGATTTGATGAAAATCAAGAAGGAGATGGAACGCATTATCAGCACAAACTTACCACTTGTAAGAGAAGAAGTTTCAAGGGATAAAGCTTAA

Coding sequence (CDS)

ATGGCACAAAATGAAATTCACCCCTCCAACGACAACCCATGCAAATTCGTGGAGAAATTCTTAACCTGCACCAACAAATACGGCATCTTGGTGATGTACCATAAATTACACTCTCTTACCTCACCATTCTTTCGAACTACTTTCCCAGGTTTCCAGCCTCTTCAGTGTGCTCATGTAATGGCCATGGCTGTTCAGAAGCTCTTTCCAGATGCTAAAGTGACAATTGGACCATGGATTGAAAATGGGTTTTGCTATGATTTTGATATAGAGCCCTTGGGAGATAAAGATTTGATGAAAATCAAGAAGGAGATGGAACGCATTATCAGCACAAACTTACCACTTGTAAGAGAAGAAGTTTCAAGGGATAAAGCTTAA

Protein sequence

MAQNEIHPSNDNPCKFVEKFLTCTNKYGILVMYHKLHSLTSPFFRTTFPGFQPLQCAHVMAMAVQKLFPDAKVTIGPWIENGFCYDFDIEPLGDKDLMKIKKEMERIISTNLPLVREEVSRDKA*
Homology
[Close]
BLAST of Csa4G650170 vs. Swiss-Prot
Match: SYTM2_ARATH (Threonine--tRNA ligase, chloroplastic/mitochondrial 2 OS=Arabidopsis thaliana GN=EMB2761 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-27
Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = 1 

Query: 56  CAHVMAMAVQKLFPDAKVTIGPWIENGFCYDFDIEPLGDKDLMKIKKEMERIISTNLPLV 115
           CAHVMAMAVQKLFPDAKVTIGPWI+NGF YDFD+EPL DKDL +IKKEM+RIIS NLPL+
Sbjct: 86  CAHVMAMAVQKLFPDAKVTIGPWIDNGFYYDFDMEPLTDKDLKRIKKEMDRIISRNLPLL 145

Query: 116 REEVSRDKA 125
           REEVSR++A
Sbjct: 146 REEVSREEA 154

[Close]
BLAST of Csa4G650170 vs. Swiss-Prot
Match: SYT_THEEB (Threonine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=thrS PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 7.4e-19
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 1 

Query: 57  AHVMAMAVQKLFPDAKVTIGPWIENGFCYDFD-IEPLGDKDLMKIKKEMERIISTNLPLV 116
           +H++AMAVQKLFP A+VTIGPWIENGF YDFD  EP  +KDL  I+KEM +II   LP++
Sbjct: 28  SHILAMAVQKLFPKAQVTIGPWIENGFYYDFDHPEPFSEKDLRLIEKEMVKIIKRKLPVI 87

Query: 117 REEVSRDKA 125
           REEV+R++A
Sbjct: 88  REEVTREEA 96

[Close]
BLAST of Csa4G650170 vs. Swiss-Prot
Match: SYT_SYNY3 (Threonine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=thrS PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.7e-19
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 1 

Query: 57  AHVMAMAVQKLFPDAKVTIGPWIENGFCYDFDI-EPLGDKDLMKIKKEMERIISTNLPLV 116
           +HVMAMAVQKLFP A+VTIGPW E GF YDFD+ EP  + DL  IKKEM +II+  LP++
Sbjct: 30  SHVMAMAVQKLFPKAQVTIGPWTETGFYYDFDVAEPFTEADLKAIKKEMVKIINKKLPVI 89

Query: 117 REEVSRDKA 125
           REE+SR++A
Sbjct: 90  REEISREEA 98

[Close]
BLAST of Csa4G650170 vs. Swiss-Prot
Match: SYT_SYNE7 (Threonine--tRNA ligase OS=Synechococcus elongatus (strain PCC 7942) GN=thrS PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.2e-18
Identity = 47/69 (68.12%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 57  AHVMAMAVQKLFPDAKVTIGPWIENGFCYDFDI-EPLGDKDLMKIKKEMERIISTNLPLV 116
           +HVMAMAVQKLFP A+VTIGPW E GF YDFD  EP  + DL  IKKEM +II   LP+V
Sbjct: 30  SHVMAMAVQKLFPKAQVTIGPWTETGFYYDFDTPEPFTEADLKAIKKEMVKIIQQKLPVV 89

Query: 117 REEVSRDKA 125
           REEVSR++A
Sbjct: 90  REEVSREEA 98

[Close]
BLAST of Csa4G650170 vs. Swiss-Prot
Match: SYT_SYNP6 (Threonine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=thrS PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.2e-18
Identity = 47/69 (68.12%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 57  AHVMAMAVQKLFPDAKVTIGPWIENGFCYDFDI-EPLGDKDLMKIKKEMERIISTNLPLV 116
           +HVMAMAVQKLFP A+VTIGPW E GF YDFD  EP  + DL  IKKEM +II   LP+V
Sbjct: 33  SHVMAMAVQKLFPKAQVTIGPWTETGFYYDFDTPEPFTEADLKAIKKEMVKIIQQKLPVV 92

Query: 117 REEVSRDKA 125
           REEVSR++A
Sbjct: 93  REEVSREEA 101

[Close]
BLAST of Csa4G650170 vs. TrEMBL
Match: A0A0A0L0Y5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G650170 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 3.0e-67
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 

Query: 1   MAQNEIHPSNDNPCKFVEKFLTCTNKYGILVMYHKLHSLTSPFFRTTFPGFQPLQCAHVM 60
           MAQNEIHPSNDNPCKFVEKFLTCTNKYGILVMYHKLHSLTSPFFRTTFPGFQPLQCAHVM
Sbjct: 1   MAQNEIHPSNDNPCKFVEKFLTCTNKYGILVMYHKLHSLTSPFFRTTFPGFQPLQCAHVM 60

Query: 61  AMAVQKLFPDAKVTIGPWIENGFCYDFDIEPLGDKDLMKIKKEMERIISTNLPLVREEVS 120
           AMAVQKLFPDAKVTIGPWIENGFCYDFDIEPLGDKDLMKIKKEMERIISTNLPLVREEVS
Sbjct: 61  AMAVQKLFPDAKVTIGPWIENGFCYDFDIEPLGDKDLMKIKKEMERIISTNLPLVREEVS 120

Query: 121 RDKA 125
           RDKA
Sbjct: 121 RDKA 124

[Close]
BLAST of Csa4G650170 vs. TrEMBL
Match: A0A0A0K179_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G033430 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.7e-28
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 1 

Query: 56  CAHVMAMAVQKLFPDAKVTIGPWIENGFCYDFDIEPLGDKDLMKIKKEMERIISTNLPLV 115
           CAHVMAMAVQKLFPDAKVTIGPWIENGF YDFD+EPLGDKDL KIKKEMERIIS NLPLV
Sbjct: 108 CAHVMAMAVQKLFPDAKVTIGPWIENGFYYDFDMEPLGDKDLKKIKKEMERIISRNLPLV 167

Query: 116 REEVSRDKA 125
           REEVSRD+A
Sbjct: 168 REEVSRDEA 176

[Close]
BLAST of Csa4G650170 vs. TrEMBL
Match: A0A059DDZ8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01064 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.3e-26
Identity = 59/71 (83.10%), Postives = 65/71 (91.55%), Query Frame = 1 

Query: 54  LQCAHVMAMAVQKLFPDAKVTIGPWIENGFCYDFDIEPLGDKDLMKIKKEMERIISTNLP 113
           +QCAHVMAMAVQKLFPDAKVTIGPWI+NGF YDFD+EPL DKD  +IKKEM+RII  NLP
Sbjct: 1   MQCAHVMAMAVQKLFPDAKVTIGPWIDNGFYYDFDMEPLTDKDFKRIKKEMDRIIGKNLP 60

Query: 114 LVREEVSRDKA 125
           LVREEVSRD+A
Sbjct: 61  LVREEVSRDEA 71

[Close]
BLAST of Csa4G650170 vs. TrEMBL
Match: A5BHW8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002009 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.4e-26
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 1 

Query: 56  CAHVMAMAVQKLFPDAKVTIGPWIENGFCYDFDIEPLGDKDLMKIKKEMERIISTNLPLV 115
           CAHVMAMAVQKLFPDAKVTIGPWIENGF YDFD+EPL DKDL +IKKEM+RII  NLPL+
Sbjct: 113 CAHVMAMAVQKLFPDAKVTIGPWIENGFYYDFDMEPLTDKDLKRIKKEMDRIIGRNLPLI 172

Query: 116 REEVSRDKA 125
           REEVSRD+A
Sbjct: 173 REEVSRDEA 181

[Close]
BLAST of Csa4G650170 vs. TrEMBL
Match: F6HHK5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0057g00400 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.4e-26
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 1 

Query: 56  CAHVMAMAVQKLFPDAKVTIGPWIENGFCYDFDIEPLGDKDLMKIKKEMERIISTNLPLV 115
           CAHVMAMAVQKLFPDAKVTIGPWIENGF YDFD+EPL DKDL +IKKEM+RII  NLPL+
Sbjct: 106 CAHVMAMAVQKLFPDAKVTIGPWIENGFYYDFDMEPLTDKDLKRIKKEMDRIIGRNLPLI 165

Query: 116 REEVSRDKA 125
           REEVSRD+A
Sbjct: 166 REEVSRDEA 174

[Close]
BLAST of Csa4G650170 vs. TAIR10
Match: AT2G04842.1 (AT2G04842.1 threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative)

HSP 1 Score: 123.6 bits (309), Expect = 8.4e-29
Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = 1 

Query: 56  CAHVMAMAVQKLFPDAKVTIGPWIENGFCYDFDIEPLGDKDLMKIKKEMERIISTNLPLV 115
           CAHVMAMAVQKLFPDAKVTIGPWI+NGF YDFD+EPL DKDL +IKKEM+RIIS NLPL+
Sbjct: 86  CAHVMAMAVQKLFPDAKVTIGPWIDNGFYYDFDMEPLTDKDLKRIKKEMDRIISRNLPLL 145

Query: 116 REEVSRDKA 125
           REEVSR++A
Sbjct: 146 REEVSREEA 154

[Close]
BLAST of Csa4G650170 vs. NCBI nr
Match: gi|700200240|gb|KGN55398.1| (hypothetical protein Csa_4G650170 [Cucumis sativus])

HSP 1 Score: 262.3 bits (669), Expect = 4.3e-67
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 

Query: 1   MAQNEIHPSNDNPCKFVEKFLTCTNKYGILVMYHKLHSLTSPFFRTTFPGFQPLQCAHVM 60
           MAQNEIHPSNDNPCKFVEKFLTCTNKYGILVMYHKLHSLTSPFFRTTFPGFQPLQCAHVM
Sbjct: 1   MAQNEIHPSNDNPCKFVEKFLTCTNKYGILVMYHKLHSLTSPFFRTTFPGFQPLQCAHVM 60

Query: 61  AMAVQKLFPDAKVTIGPWIENGFCYDFDIEPLGDKDLMKIKKEMERIISTNLPLVREEVS 120
           AMAVQKLFPDAKVTIGPWIENGFCYDFDIEPLGDKDLMKIKKEMERIISTNLPLVREEVS
Sbjct: 61  AMAVQKLFPDAKVTIGPWIENGFCYDFDIEPLGDKDLMKIKKEMERIISTNLPLVREEVS 120

Query: 121 RDKA 125
           RDKA
Sbjct: 121 RDKA 124

[Close]
BLAST of Csa4G650170 vs. NCBI nr
Match: gi|449453584|ref|XP_004144536.1| (PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 3.9e-28
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 1 

Query: 56  CAHVMAMAVQKLFPDAKVTIGPWIENGFCYDFDIEPLGDKDLMKIKKEMERIISTNLPLV 115
           CAHVMAMAVQKLFPDAKVTIGPWIENGF YDFD+EPLGDKDL KIKKEMERIIS NLPLV
Sbjct: 108 CAHVMAMAVQKLFPDAKVTIGPWIENGFYYDFDMEPLGDKDLKKIKKEMERIISRNLPLV 167

Query: 116 REEVSRDKA 125
           REEVSRD+A
Sbjct: 168 REEVSRDEA 176

[Close]
BLAST of Csa4G650170 vs. NCBI nr
Match: gi|659124339|ref|XP_008462105.1| (PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 3.9e-28
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 1 

Query: 56  CAHVMAMAVQKLFPDAKVTIGPWIENGFCYDFDIEPLGDKDLMKIKKEMERIISTNLPLV 115
           CAHVMAMAVQKLFPDAKVTIGPWIENGF YDFD+EPLGDKDL KIKKEMERIIS NLPLV
Sbjct: 108 CAHVMAMAVQKLFPDAKVTIGPWIENGFYYDFDMEPLGDKDLKKIKKEMERIISRNLPLV 167

Query: 116 REEVSRDKA 125
           REEVSRD+A
Sbjct: 168 REEVSRDEA 176

[Close]
BLAST of Csa4G650170 vs. NCBI nr
Match: gi|629124284|gb|KCW88709.1| (hypothetical protein EUGRSUZ_A01064 [Eucalyptus grandis])

HSP 1 Score: 125.9 bits (315), Expect = 4.8e-26
Identity = 59/71 (83.10%), Postives = 65/71 (91.55%), Query Frame = 1 

Query: 54  LQCAHVMAMAVQKLFPDAKVTIGPWIENGFCYDFDIEPLGDKDLMKIKKEMERIISTNLP 113
           +QCAHVMAMAVQKLFPDAKVTIGPWI+NGF YDFD+EPL DKD  +IKKEM+RII  NLP
Sbjct: 1   MQCAHVMAMAVQKLFPDAKVTIGPWIDNGFYYDFDMEPLTDKDFKRIKKEMDRIIGKNLP 60

Query: 114 LVREEVSRDKA 125
           LVREEVSRD+A
Sbjct: 61  LVREEVSRDEA 71

[Close]
BLAST of Csa4G650170 vs. NCBI nr
Match: gi|147835149|emb|CAN65674.1| (hypothetical protein VITISV_002009 [Vitis vinifera])

HSP 1 Score: 125.6 bits (314), Expect = 6.3e-26
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 1 

Query: 56  CAHVMAMAVQKLFPDAKVTIGPWIENGFCYDFDIEPLGDKDLMKIKKEMERIISTNLPLV 115
           CAHVMAMAVQKLFPDAKVTIGPWIENGF YDFD+EPL DKDL +IKKEM+RII  NLPL+
Sbjct: 113 CAHVMAMAVQKLFPDAKVTIGPWIENGFYYDFDMEPLTDKDLKRIKKEMDRIIGRNLPLI 172

Query: 116 REEVSRDKA 125
           REEVSRD+A
Sbjct: 173 REEVSRDEA 181

The following BLAST results are available for this feature:
BLAST of Csa4G650170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SYTM2_ARATH1.5e-2784.06Threonine--tRNA ligase, chloroplastic/mitochondrial 2 OS=Arabidopsis thaliana GN... [more]
SYT_THEEB7.4e-1965.22Threonine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=thrS PE... [more]
SYT_SYNY39.7e-1965.22Threonine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=thrS P... [more]
SYT_SYNE72.2e-1868.12Threonine--tRNA ligase OS=Synechococcus elongatus (strain PCC 7942) GN=thrS PE=3... [more]
SYT_SYNP62.2e-1868.12Threonine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG... [more]
BLAST of Csa4G650170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0Y5_CUCSA3.0e-67100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G650170 PE=4 SV=1[more]
A0A0A0K179_CUCSA2.7e-2892.75Uncharacterized protein OS=Cucumis sativus GN=Csa_7G033430 PE=3 SV=1[more]
A0A059DDZ8_EUCGR3.3e-2683.10Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01064 PE=3 SV=1[more]
A5BHW8_VITVI4.4e-2685.51Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002009 PE=3 SV=1[more]
F6HHK5_VITVI4.4e-2685.51Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0057g00400 PE=3 SV=... [more]
BLAST of Csa4G650170 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G04842.18.4e-2984.06 threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putativ... [more]
BLAST of Csa4G650170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200240|gb|KGN55398.1|4.3e-67100.00hypothetical protein Csa_4G650170 [Cucumis sativus][more]
gi|449453584|ref|XP_004144536.1|3.9e-2892.75PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Cucumis sativus][more]
gi|659124339|ref|XP_008462105.1|3.9e-2892.75PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Cucumis melo][more]
gi|629124284|gb|KCW88709.1|4.8e-2683.10hypothetical protein EUGRSUZ_A01064 [Eucalyptus grandis][more]
gi|147835149|emb|CAN65674.1|6.3e-2685.51hypothetical protein VITISV_002009 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018163Thr/Ala-tRNA-synth_IIc_edit
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0006566 threonine metabolic process
biological_process GO:0006435 threonyl-tRNA aminoacylation
biological_process GO:0008150 biological_process
biological_process GO:0006544 glycine metabolic process
biological_process GO:0071555 cell wall organization
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
cellular_component GO:0005576 extracellular region
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005575 cellular_component
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0004650 polygalacturonase activity
molecular_function GO:0004829 threonine-tRNA ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0016874 ligase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G650170.1Csa4G650170.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018163Threonyl/alanyl tRNA synthetase, class II-like, putative editing domainunknownSSF55186ThrRS/AlaRS common domaincoord: 56..124
score: 9.16
NoneNo IPR availableGENE3DG3DSA:3.30.980.10coord: 56..117
score: 1.9
NoneNo IPR availablePANTHERPTHR11451TRNA SYNTHETASE-RELATEDcoord: 56..124
score: 1.4
NoneNo IPR availablePANTHERPTHR11451:SF32THREONYL-TRNA SYNTHETASE / THREONINE--TRNA LIGASE-RELATEDcoord: 56..124
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G650170CSPI04G25930Wild cucumber (PI 183967)cpicuB181
Csa4G650170CsGy4G024240Cucumber (Gy14) v2cgybcuB166
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G650170Melon (DHL92) v3.6.1cumedB298
Csa4G650170Silver-seed gourdcarcuB0656
Csa4G650170Silver-seed gourdcarcuB0789
Csa4G650170Watermelon (97103) v2cuwmbB306
Csa4G650170Wax gourdcuwgoB419
Csa4G650170Cucumber (Gy14) v1cgycuB387
Csa4G650170Cucurbita maxima (Rimu)cmacuB020
Csa4G650170Cucurbita maxima (Rimu)cmacuB473
Csa4G650170Cucurbita moschata (Rifu)cmocuB011
Csa4G650170Cucurbita moschata (Rifu)cmocuB463
Csa4G650170Melon (DHL92) v3.5.1cumeB313
Csa4G650170Watermelon (Charleston Gray)cuwcgB309
Csa4G650170Watermelon (97103) v1cuwmB320
Csa4G650170Cucurbita pepo (Zucchini)cpecuB564
Csa4G650170Cucurbita pepo (Zucchini)cpecuB782
Csa4G650170Bottle gourd (USVL1VR-Ls)culsiB291