Csa4G639090 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G639090
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 21034294 .. 21035544 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCGTCTTGTGAATGCACATGAACTGTTCGACAAGATGCAAATGGGTTTTGGCAATGGAATTACAGCTGGGGTTACTGTTGAAATGCCTTTGAGAAACATGTAAACACTTCTGGCTACCTACTTTATTAATTACGTAGAGTTTTAATGATTCAAAGTACACAAAAATATTTAAAACTTCTTTGAAGAACTCGGCAGCCCCGATACTTTTGGAATTCAAATAAGCACTAGTCTCATCCCAACTGTGATTAGAATAGGGTCCCCAATAATTAAATTCCCCCCATCCTCGAAAAGATTATTGCTTTATTACTTTTGTTGATCATGAAGCATTAAAATATTTCTGCTTTGAAGTCTCTGTCACGTGGTTGTGAGTGCTTACTTTCATTTTTTTTTTTAATTTCCCACAAGTTTTTTTTAGTCGAAAAGTGACCATTTGTATCATGAAAGCATCCATTATTCCATGTGTAAGTGACAAAATAGCCAAATTTGCTTTTCAAAAAACAGAGATTTTATTAAATACTGTTTTTCCAGCCAGAAGCTTGTTTTTAAAGAAATCAATTGTATTCGACATATGCATTGAAGAGGTTGAAGGGACCTCGAGCATTGGATAAGATACTTCATTTGTTATCAATTATCTTTTCTTGATGGATAAGGAAGAAAAGGTAGGTGAACGGCATAAATTGGTACTAAGTGAACAATTCGTTTTCTTTCCCTCCTTTCAAGTCAGCCCTGAAAATGCAAATCTGTTAGGATTCATATGAAGGGCAAAGCTGAGAAATGGTTTGTATATTTCTTGTATTGAAAGGGATTATTATAATGAGCTTAGGTATTAGGTAAGTAATTAAAAACCAATACTAATATTATACATATGAATCTAACCTGTCCATTGTTCAGCACTTCTGCTTTGGATCTTCCAAAAGAAGTAAAAATTTATTAATTAGTTGGCAAGCATGTGAAACTAGCAGCCTTTGCCGTCAAATTCATTCCTTACTAATATTTTATGTAATCGCCTCTCATATGTGCTTCCAAAATCACTAACAATCGCAACCCACATGGAATTTGGTTAATATTTAACCAATGAAATCTTAATTACTCTGGTTGTACTCTGTTTTTCAGGCTTAATTATATTTTGCGAGTCCATTCCCAAGAGAAAGAAAGTGGGCAAGAAAGAAAGGATATAAAGGAGATGGGCTTCGAAAGAGAAGGCACACGTTGTTCCATGATGACACAGACATGTTGTGGACCATAG

mRNA sequence

ATGGGCCGTCTTGTGAATGCACATGAACTGTTCGACAAGATGCAAATGGGTTTTGGCAATGGAATTACAGCTGGGGTTACTGTTGAAATGCCTTTGAGAAACATGCTTAATTATATTTTGCGAGTCCATTCCCAAGAGAAAGAAAGTGGGCAAGAAAGAAAGGATATAAAGGAGATGGGCTTCGAAAGAGAAGGCACACGTTGTTCCATGATGACACAGACATGTTGTGGACCATAG

Coding sequence (CDS)

ATGGGCCGTCTTGTGAATGCACATGAACTGTTCGACAAGATGCAAATGGGTTTTGGCAATGGAATTACAGCTGGGGTTACTGTTGAAATGCCTTTGAGAAACATGCTTAATTATATTTTGCGAGTCCATTCCCAAGAGAAAGAAAGTGGGCAAGAAAGAAAGGATATAAAGGAGATGGGCTTCGAAAGAGAAGGCACACGTTGTTCCATGATGACACAGACATGTTGTGGACCATAG

Protein sequence

MGRLVNAHELFDKMQMGFGNGITAGVTVEMPLRNMLNYILRVHSQEKESGQERKDIKEMGFEREGTRCSMMTQTCCGP*
Homology
[Close]
BLAST of Csa4G639090 vs. TrEMBL
Match: A0A0A0KZQ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639090 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 5.4e-38
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 

Query: 1  MGRLVNAHELFDKMQMGFGNGITAGVTVEMPLRNMLNYILRVHSQEKESGQERKDIKEMG 60
          MGRLVNAHELFDKMQMGFGNGITAGVTVEMPLRNMLNYILRVHSQEKESGQERKDIKEMG
Sbjct: 1  MGRLVNAHELFDKMQMGFGNGITAGVTVEMPLRNMLNYILRVHSQEKESGQERKDIKEMG 60

Query: 61 FEREGTRCSMMTQTCCGP 79
          FEREGTRCSMMTQTCCGP
Sbjct: 61 FEREGTRCSMMTQTCCGP 78

[Close]
BLAST of Csa4G639090 vs. NCBI nr
Match: gi|700200012|gb|KGN55170.1| (hypothetical protein Csa_4G639090 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 7.7e-38
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 

Query: 1  MGRLVNAHELFDKMQMGFGNGITAGVTVEMPLRNMLNYILRVHSQEKESGQERKDIKEMG 60
          MGRLVNAHELFDKMQMGFGNGITAGVTVEMPLRNMLNYILRVHSQEKESGQERKDIKEMG
Sbjct: 1  MGRLVNAHELFDKMQMGFGNGITAGVTVEMPLRNMLNYILRVHSQEKESGQERKDIKEMG 60

Query: 61 FEREGTRCSMMTQTCCGP 79
          FEREGTRCSMMTQTCCGP
Sbjct: 61 FEREGTRCSMMTQTCCGP 78

The following BLAST results are available for this feature:
BLAST of Csa4G639090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZQ5_CUCSA5.4e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639090 PE=4 SV=1[more]
BLAST of Csa4G639090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200012|gb|KGN55170.1|7.7e-38100.00hypothetical protein Csa_4G639090 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G639090.1Csa4G639090.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G639090CsGy4G022180Cucumber (Gy14) v2cgybcuB166
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G639090Cucumber (Chinese Long) v2cucuB062
Csa4G639090Cucumber (Gy14) v1cgycuB163
Csa4G639090Cucumber (Gy14) v1cgycuB321
Csa4G639090Cucumber (Gy14) v1cgycuB328
Csa4G639090Cucurbita maxima (Rimu)cmacuB020
Csa4G639090Cucurbita maxima (Rimu)cmacuB186
Csa4G639090Cucurbita maxima (Rimu)cmacuB473
Csa4G639090Cucurbita moschata (Rifu)cmocuB011
Csa4G639090Cucurbita moschata (Rifu)cmocuB169
Csa4G639090Cucurbita moschata (Rifu)cmocuB461
Csa4G639090Melon (DHL92) v3.5.1cumeB281
Csa4G639090Melon (DHL92) v3.5.1cumeB290
Csa4G639090Melon (DHL92) v3.5.1cumeB313
Csa4G639090Watermelon (Charleston Gray)cuwcgB310
Csa4G639090Watermelon (Charleston Gray)cuwcgB332
Csa4G639090Watermelon (97103) v1cuwmB298
Csa4G639090Watermelon (97103) v1cuwmB319
Csa4G639090Watermelon (97103) v1cuwmB346
Csa4G639090Cucurbita pepo (Zucchini)cpecuB564
Csa4G639090Cucurbita pepo (Zucchini)cpecuB782
Csa4G639090Cucurbita pepo (Zucchini)cpecuB832
Csa4G639090Bottle gourd (USVL1VR-Ls)culsiB291
Csa4G639090Bottle gourd (USVL1VR-Ls)culsiB317
Csa4G639090Cucumber (Gy14) v2cgybcuB073
Csa4G639090Cucumber (Gy14) v2cgybcuB316
Csa4G639090Melon (DHL92) v3.6.1cumedB266
Csa4G639090Melon (DHL92) v3.6.1cumedB275
Csa4G639090Melon (DHL92) v3.6.1cumedB298
Csa4G639090Silver-seed gourdcarcuB0112
Csa4G639090Silver-seed gourdcarcuB0789
Csa4G639090Watermelon (97103) v2cuwmbB305
Csa4G639090Watermelon (97103) v2cuwmbB326
Csa4G639090Wax gourdcuwgoB385
Csa4G639090Wax gourdcuwgoB419