Csa4G620620 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G620620
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 19851694 .. 19851978 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATGATAAGGTTAATATTCAGAAGCTTAGCTTTAATGGTGGTACACAAACAAACTGCCGCATCCAAATCCACTAGTCCTTCAAGAACAGGGCAGCAAGTTTGTTTCGTACGGTCACCAATTCCGATATGGATCAACCCACCCAACAAGTCCACACACGCTCCCAACTTCAGCGTGTCAATGGGGCATGTCTCCCGTTTCGGCGGCGGAGGAGGACAAGGAGTCGATGGGGATGGAACCACCGGCGCTGGCTTTAATGGTGGACTGGGCACTGGAACATAA

mRNA sequence

ATGGGAATGATAAGGTTAATATTCAGAAGCTTAGCTTTAATGGTGGTACACAAACAAACTGCCGCATCCAAATCCACTAGTCCTTCAAGAACAGGGCAGCAAGTTTGTTTCGTACGGTCACCAATTCCGATATGGATCAACCCACCCAACAAGTCCACACACGCTCCCAACTTCAGCGTGTCAATGGGGCATGTCTCCCGTTTCGGCGGCGGAGGAGGACAAGGAGTCGATGGGGATGGAACCACCGGCGCTGGCTTTAATGGTGGACTGGGCACTGGAACATAA

Coding sequence (CDS)

ATGGGAATGATAAGGTTAATATTCAGAAGCTTAGCTTTAATGGTGGTACACAAACAAACTGCCGCATCCAAATCCACTAGTCCTTCAAGAACAGGGCAGCAAGTTTGTTTCGTACGGTCACCAATTCCGATATGGATCAACCCACCCAACAAGTCCACACACGCTCCCAACTTCAGCGTGTCAATGGGGCATGTCTCCCGTTTCGGCGGCGGAGGAGGACAAGGAGTCGATGGGGATGGAACCACCGGCGCTGGCTTTAATGGTGGACTGGGCACTGGAACATAA

Protein sequence

MGMIRLIFRSLALMVVHKQTAASKSTSPSRTGQQVCFVRSPIPIWINPPNKSTHAPNFSVSMGHVSRFGGGGGQGVDGDGTTGAGFNGGLGTGT*
Homology
[Close]
BLAST of Csa4G620620 vs. TrEMBL
Match: A0A0A0L1W8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G620620 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.5e-47
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MGMIRLIFRSLALMVVHKQTAASKSTSPSRTGQQVCFVRSPIPIWINPPNKSTHAPNFSV 60
          MGMIRLIFRSLALMVVHKQTAASKSTSPSRTGQQVCFVRSPIPIWINPPNKSTHAPNFSV
Sbjct: 1  MGMIRLIFRSLALMVVHKQTAASKSTSPSRTGQQVCFVRSPIPIWINPPNKSTHAPNFSV 60

Query: 61 SMGHVSRFGGGGGQGVDGDGTTGAGFNGGLGTGT 95
          SMGHVSRFGGGGGQGVDGDGTTGAGFNGGLGTGT
Sbjct: 61 SMGHVSRFGGGGGQGVDGDGTTGAGFNGGLGTGT 94

[Close]
BLAST of Csa4G620620 vs. TrEMBL
Match: I3SLI2_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-20
Identity = 57/91 (62.64%), Postives = 65/91 (71.43%), Query Frame = 1 

Query: 1  MGMIRLIFRSLALMVVHKQTAASKSTSPSRTGQQVCFVRSPIPIWINPPNKSTHAPNFSV 60
          MGM+ L+ RSLALMVV + TAASKSTSP+ TGQQVC    PIP+ I PP +STHAP+F V
Sbjct: 1  MGMMILMLRSLALMVVQRHTAASKSTSPASTGQQVCLALPPIPMCIRPPKRSTHAPSFKV 60

Query: 61 SMGHVSRFGGGGGQGVDGDGTTGAGFNGGLG 92
          S+GHV   GG       GDGTTG G  GGLG
Sbjct: 61 SIGHVGCAGG-------GDGTTGGG--GGLG 82

[Close]
BLAST of Csa4G620620 vs. TrEMBL
Match: U5G562_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01010g PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.5e-18
Identity = 52/92 (56.52%), Postives = 60/92 (65.22%), Query Frame = 1 

Query: 1  MGMIRLIFRSLALMVVHKQTAASKSTSPSRTGQQVCFVRSPIPIWINPPNKSTHAPNFSV 60
          MG IRL+ RSLAL+ V + TAASKST PS +GQ       PIP+W +PP  STHAPN  V
Sbjct: 1  MGRIRLMLRSLALITVQRHTAASKSTRPSSSGQHSSLALLPIPMWTSPPRTSTHAPNLRV 60

Query: 61 SMGHVSRFGG-GGGQGVDGDGTTGAGFNGGLG 92
          SMG VS FGG GGG  + G G TG    G +G
Sbjct: 61 SMGQVSCFGGVGGGFTIGGVGITGGSGGGRIG 92

[Close]
BLAST of Csa4G620620 vs. TrEMBL
Match: A0A0K9QP24_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_157770 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.2e-14
Identity = 44/90 (48.89%), Postives = 55/90 (61.11%), Query Frame = 1 

Query: 4  IRLIFRSLALMVVHKQTAASKSTSPSRTGQQVCFVRSPIPIWINPPNKSTHAPNFSVSMG 63
          +RL+F+S  L+VV + TAASK  SP   GQQ    R P P+ I+PP+ STH P+F+  MG
Sbjct: 1  MRLMFKSFTLIVVQRHTAASKPVSPPNKGQQAFLARPPNPMCISPPSTSTHPPSFNALMG 60

Query: 64 HVSRFG--GGGGQGVDGDGTTGAGFNGGLG 92
          HV  FG  GG G GV G  T   G   G+G
Sbjct: 61 HVGCFGGEGGDGMGVPGGQTVPGGVGDGVG 90

[Close]
BLAST of Csa4G620620 vs. TrEMBL
Match: A0A061GMW5_THECC (Uncharacterized protein (Fragment) OS=Theobroma cacao GN=TCM_047111 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.5e-14
Identity = 51/96 (53.12%), Postives = 59/96 (61.46%), Query Frame = 1 

Query: 3  MIRLIFRSLALMVVHKQTAASKSTSPSRTGQQVCFVRSPIPIWINPPNKSTHAPNFSVSM 62
          M+RL  RSL+L VVH+QTAAS STSP RTGQ      SPI +  NPP +ST AP+FSVS+
Sbjct: 1  MLRL--RSLSLRVVHRQTAASSSTSPERTGQHSFTTGSPITMCTNPPRRSTQAPSFSVSI 60

Query: 63 GHVSRFGGGG-----GQGVDGDGTTGAGFNGGLGTG 94
          G V+  GGGG     G  V G   TG    GG   G
Sbjct: 61 GQVAVAGGGGQDFPLGGVVIGGTVTGGRLMGGFTIG 94

[Close]
BLAST of Csa4G620620 vs. NCBI nr
Match: gi|700199841|gb|KGN54999.1| (hypothetical protein Csa_4G620620 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 2.2e-47
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MGMIRLIFRSLALMVVHKQTAASKSTSPSRTGQQVCFVRSPIPIWINPPNKSTHAPNFSV 60
          MGMIRLIFRSLALMVVHKQTAASKSTSPSRTGQQVCFVRSPIPIWINPPNKSTHAPNFSV
Sbjct: 1  MGMIRLIFRSLALMVVHKQTAASKSTSPSRTGQQVCFVRSPIPIWINPPNKSTHAPNFSV 60

Query: 61 SMGHVSRFGGGGGQGVDGDGTTGAGFNGGLGTGT 95
          SMGHVSRFGGGGGQGVDGDGTTGAGFNGGLGTGT
Sbjct: 61 SMGHVSRFGGGGGQGVDGDGTTGAGFNGGLGTGT 94

[Close]
BLAST of Csa4G620620 vs. NCBI nr
Match: gi|388506116|gb|AFK41124.1| (unknown [Lotus japonicus])

HSP 1 Score: 106.7 bits (265), Expect = 2.3e-20
Identity = 57/91 (62.64%), Postives = 65/91 (71.43%), Query Frame = 1 

Query: 1  MGMIRLIFRSLALMVVHKQTAASKSTSPSRTGQQVCFVRSPIPIWINPPNKSTHAPNFSV 60
          MGM+ L+ RSLALMVV + TAASKSTSP+ TGQQVC    PIP+ I PP +STHAP+F V
Sbjct: 1  MGMMILMLRSLALMVVQRHTAASKSTSPASTGQQVCLALPPIPMCIRPPKRSTHAPSFKV 60

Query: 61 SMGHVSRFGGGGGQGVDGDGTTGAGFNGGLG 92
          S+GHV   GG       GDGTTG G  GGLG
Sbjct: 61 SIGHVGCAGG-------GDGTTGGG--GGLG 82

[Close]
BLAST of Csa4G620620 vs. NCBI nr
Match: gi|566173834|ref|XP_006380876.1| (hypothetical protein POPTR_0006s01010g [Populus trichocarpa])

HSP 1 Score: 99.4 bits (246), Expect = 3.7e-18
Identity = 52/92 (56.52%), Postives = 60/92 (65.22%), Query Frame = 1 

Query: 1  MGMIRLIFRSLALMVVHKQTAASKSTSPSRTGQQVCFVRSPIPIWINPPNKSTHAPNFSV 60
          MG IRL+ RSLAL+ V + TAASKST PS +GQ       PIP+W +PP  STHAPN  V
Sbjct: 1  MGRIRLMLRSLALITVQRHTAASKSTRPSSSGQHSSLALLPIPMWTSPPRTSTHAPNLRV 60

Query: 61 SMGHVSRFGG-GGGQGVDGDGTTGAGFNGGLG 92
          SMG VS FGG GGG  + G G TG    G +G
Sbjct: 61 SMGQVSCFGGVGGGFTIGGVGITGGSGGGRIG 92

[Close]
BLAST of Csa4G620620 vs. NCBI nr
Match: gi|902177673|gb|KNA08987.1| (hypothetical protein SOVF_157770 [Spinacia oleracea])

HSP 1 Score: 86.3 bits (212), Expect = 3.2e-14
Identity = 44/90 (48.89%), Postives = 55/90 (61.11%), Query Frame = 1 

Query: 4  IRLIFRSLALMVVHKQTAASKSTSPSRTGQQVCFVRSPIPIWINPPNKSTHAPNFSVSMG 63
          +RL+F+S  L+VV + TAASK  SP   GQQ    R P P+ I+PP+ STH P+F+  MG
Sbjct: 1  MRLMFKSFTLIVVQRHTAASKPVSPPNKGQQAFLARPPNPMCISPPSTSTHPPSFNALMG 60

Query: 64 HVSRFG--GGGGQGVDGDGTTGAGFNGGLG 92
          HV  FG  GG G GV G  T   G   G+G
Sbjct: 61 HVGCFGGEGGDGMGVPGGQTVPGGVGDGVG 90

[Close]
BLAST of Csa4G620620 vs. NCBI nr
Match: gi|590578584|ref|XP_007013551.1| (Uncharacterized protein TCM_047111, partial [Theobroma cacao])

HSP 1 Score: 84.7 bits (208), Expect = 9.3e-14
Identity = 51/96 (53.12%), Postives = 59/96 (61.46%), Query Frame = 1 

Query: 3  MIRLIFRSLALMVVHKQTAASKSTSPSRTGQQVCFVRSPIPIWINPPNKSTHAPNFSVSM 62
          M+RL  RSL+L VVH+QTAAS STSP RTGQ      SPI +  NPP +ST AP+FSVS+
Sbjct: 1  MLRL--RSLSLRVVHRQTAASSSTSPERTGQHSFTTGSPITMCTNPPRRSTQAPSFSVSI 60

Query: 63 GHVSRFGGGG-----GQGVDGDGTTGAGFNGGLGTG 94
          G V+  GGGG     G  V G   TG    GG   G
Sbjct: 61 GQVAVAGGGGQDFPLGGVVIGGTVTGGRLMGGFTIG 94

The following BLAST results are available for this feature:
BLAST of Csa4G620620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1W8_CUCSA1.5e-47100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G620620 PE=4 SV=1[more]
I3SLI2_LOTJA1.6e-2062.64Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
U5G562_POPTR2.5e-1856.52Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01010g PE=4 SV=1[more]
A0A0K9QP24_SPIOL2.2e-1448.89Uncharacterized protein OS=Spinacia oleracea GN=SOVF_157770 PE=4 SV=1[more]
A0A061GMW5_THECC6.5e-1453.13Uncharacterized protein (Fragment) OS=Theobroma cacao GN=TCM_047111 PE=4 SV=1[more]
BLAST of Csa4G620620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199841|gb|KGN54999.1|2.2e-47100.00hypothetical protein Csa_4G620620 [Cucumis sativus][more]
gi|388506116|gb|AFK41124.1|2.3e-2062.64unknown [Lotus japonicus][more]
gi|566173834|ref|XP_006380876.1|3.7e-1856.52hypothetical protein POPTR_0006s01010g [Populus trichocarpa][more]
gi|902177673|gb|KNA08987.1|3.2e-1448.89hypothetical protein SOVF_157770 [Spinacia oleracea][more]
gi|590578584|ref|XP_007013551.1|9.3e-1453.13Uncharacterized protein TCM_047111, partial [Theobroma cacao][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU100863cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G620620.1Csa4G620620.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU100863CU100863transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G620620MELO3C026361Melon (DHL92) v3.5.1cumeB273
Csa4G620620CmaCh01G012900Cucurbita maxima (Rimu)cmacuB474
Csa4G620620CmoCh01G013430Cucurbita moschata (Rifu)cmocuB462
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G620620Watermelon (97103) v2cuwmbB279
Csa4G620620Wax gourdcuwgoB419
Csa4G620620Cucumber (Gy14) v1cgycuB042
Csa4G620620Cucumber (Gy14) v1cgycuB043
Csa4G620620Cucurbita maxima (Rimu)cmacuB025
Csa4G620620Cucurbita moschata (Rifu)cmocuB016
Csa4G620620Watermelon (Charleston Gray)cuwcgB279
Csa4G620620Watermelon (97103) v1cuwmB349
Csa4G620620Cucurbita pepo (Zucchini)cpecuB565
Csa4G620620Cucurbita pepo (Zucchini)cpecuB786
Csa4G620620Bottle gourd (USVL1VR-Ls)culsiB283
Csa4G620620Bottle gourd (USVL1VR-Ls)culsiB290
Csa4G620620Cucumber (Gy14) v2cgybcuB166
Csa4G620620Melon (DHL92) v3.6.1cumedB304
Csa4G620620Silver-seed gourdcarcuB0339
Csa4G620620Silver-seed gourdcarcuB0657