Csa4G617320 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G617320
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Zinc finger family protein
Location	Chr4 : 19617501 .. 19622418 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATTCCTGCTAAGACCACCCCAAATTACAACCCCGTAAGAAAATTTGAAAGATAAGAGTACCATGAATTTTACACCTATTTTTTAATACACCAAAATATAGGCTTGGTTTCCAAAACTTTTATGGAAGTAACAATGGAGTACTTGAACTTAGCTGGCAACCATTAGTCCTTATACTATCAAATTGAACTCTAATGAATAATTATTTAGTCTCTGTACTTCAAATTTTAATGGTTGATATCAGAGTTAATTTATAGTTAATTTATGCGTAGATCTTTGAAGTGATTTAGTGTATTAACATTTTCTAATTTTTTTCTTTCCAACTTCCCTGCTACTTTTTTCCATAAATATTCTCCTATTTTTTTTATAGAAAATAATTTTATTGATAAATGAAATCTACCAAAGGTAGAGCCCATCAAATCTCCATTAAAGTTGGCAGACCTCTCACATAAAAGAACTAAGGAATCTTGATCACAATTTTTAGTGTTTGGAAGTCTACTTTATGAAGTCACTGCACATAATAGCGGAATCAGTTTTTGAATGCATTGCCTTCCTTTGAAAATGATAACTATTGTATAAATATTGAAAGAATCCCTATTTCTTAGCAATTAGCTTTTGGATTTGCTACAATTTTTTCTCACAACTTTGGTTCACTTCTGTCCATCTAATGGTTAAATCCTCATGGTGCTGGTGCTTCCTTTCTTTTTATCCTTATTCGCAGTCCCTTATTTCTCAAATCAAATTAATTTCCACAATTGAATTCTGTTTAACAGGTACGTGACATGGGCCCTCGTGCACTTGCCATTTCCTTGCCATTTTCTTGTGCTTTGGGTCTCCTCTCATCCATGACTGCTTCCACAATGGGTCAGTTACTGCTATGGATAAATATATTAAATCGTATCAACATTCATTGTTGGATATAATTTAGTCCCGCTGCCTCTGTATTCTTCTATTAATTAAATGGTGAAAGAATCTATGGAGCTGTATGGGGTCTATTTTATGAGAATATGTAAACATCTTCATTGTGAGCTCCAGAAAAATTAATTGTTTGAAAAGAAAACAGTTGTACAAAAACAATTTGGGATTCTTGTAATTTTCTTTTGTTTAAGATTTTATTAATAGAAATTTGGGTTATTGTATTAGGCTCCAATTGAGGCATTGTGAGAAGAGCGTAGAAAGAAAATGAGACCTCAAAGTTCATTAGGGTAGGCACCAGCCCCACCATAAGTAGGAGGAATATTGTAGCCTTGCATATGTTTCTCCCTCAAAAACGGCATGCCTTCCTATTAGGTCTCCAATGAGGAAGTTTAAGGCTGAGTGGACATTGCAGGACCCATTGCAGCCTTCCCATTGCTTCACTCAACCTACGGGTTACTGACAGATGCCAACTCAATTAATGAGTTGAGCTCTCTCGTGTCTTACCTTTACATGGGTTTTTTCCCCCCCTTTTTAAAAAAATTCTTGAATGCTAAAACAATGCTCCCTCGAAAACTCTGCTGGCGAAATGCTCCATCAATTTCCTATTGCAGAAAATAAGCTTAAGAGTAGCAAAACAGGTACTAAATACACTCACATAGGAATATGAGTACTCAACTGCCGCAACTATCAAAACATGAGCATTATTGGGGAAAGACATCAGTAAATCACTAACAACTAGCACATTTTATGGTTTATGGTTGCATTGTTGACCTCTTACTAGTTATAATGTTAGGCTGGTGTTGATACATATCAAATGACTACTTGATAGGAATATGTACTAGTTATAAAATAATAGTTTCATCAATCTTACTAGTTTCAACAATGTTAGGCTGGTGTTGATACATATCAAATGACTACTTGATGGGAACATGCACTAGTTATAAAATAATAGAAATAATAGTAAAATACTTTCGATTGTGTCTTGACACAAAAAAGGGAAAACAATGTTAAACAGTTGGGCGATAGGGTAACTGCCAAGGTTATTGTGTCAATTTTTCTCTAATTAGCATCGCATGCCATGTGTGATAGCTTTTTAATATGGTCTCTCATTCTTGCTTAGATTATAAAAGGTATGCCTTTGATGTACTTTCATTGCCCAATAACCATTGTATATTTAAATGGTGGCAGCGAGCAGAGCATACATTTGGGCTCATGCTTGTTTCCAGTTTGCTATAATCATCCTGTTTGCTCACGTATATTATGCAATAGTAAGTACAAGCAGTTTCCTATAACTATCTGCCTATTTTGTCTCATTATTTTGAGTGTTCTTGATCATCGGCTACTATTCTCATTTCGACATGCAGCTTAATGTGAATGCCGTTCTCTCTGTTTTCCTTTCTGCACTCACCGGATTGGGGCTTGTTATCAGCATAAACTCACTTCTGATGGAGTATCTTAAGTGGAGAAGAAGAAGGCAATTGAGACCTGCCAATCAACAGACGGGAACAAGGAGTTGGCCGCAATTACAACAGCAGCTATATGACAGTAATTACCATCAACAGCATGAGCAGCGGTTGGAGCAAGAACGCCATCAACCACATTCTCAGCAGCAAGCTATTGAAAATCAAAATATGGAGTCATTAGAGAGTGCCGATCAGGAAGGAACAACTATTCTGAGACAACAGCTCACTGAGGTGCCAAAGGTTAGTACCTATTCGGGACTAAGAAAATAGTTGGTTTCCTCTCTCTTTTTATGTGAGATCAATTATCTCCCAAGGATGGGGTTTAGCCCTCTTAGTCCAGAACATGAGTTGGCTTTGAAAATCACGATTATGATAAGAGTTTAGAGGGAATGAATTTGAGCTATAGTGGTAGTTTTTTTGAATTATTTGATCGTGTGACCTAATGTTCATAATATAAAGAAATAAAAGAAGCTCCCCCGCCAAAAGAAAAAATGGGCATTTACATGTATAGAAAAATGAATCAAAATATTTATAAAATATAGTAAAATTTCAGATCTATAACTGATAGACACTAACAAAAGTCATTGTTAGAATTTGAAATTTTGTTCTATTTTGTAAATATTTAAGACAGTTTCGTCATTTACCATAATTCACTCATAAAAAGAAAGAAATGAAATAAACAAAAGGACAAAAATACAACTAGAAGAAACCCTTATGTAGACAAAGCAAAAAAAAAAACAAGATAAAGCAATTACAATCAAATACAACCCATAGTGGAACAAATTGGCACTTGAACGAAAACCACTGAATCCAAAGTTATTTGAACAACCATGTGTAGTAAGGACCATTCAAAGTACTGAAGAAAGACCAAAACTTCAAAAACCAACAGAGACTGAAACATTCGTAACTCTTGAGACAAAAGATCCTTCCAACCTAAAAATCTTCCATTTCATCATTGGAAAACCTTGTTTCTTTTTAATATATATATTGATAGTATGACATAAAAAAAGGGCTCAAATGAGATTTGACCTAGGCTTTCAAAATATGGTTTCCCACCCTTCTCTATTTATTTCTTATAGAAAAAACACTTCATTTTATTTCAATTCTTCTTCTTCCTCTTTCCGAATCTTGTTCTATTACTCTCTCCAAACATTACATTTTCCCTCTTCCTCTTGCTTCACCACTTTTCTTCTTCTCATCCTCCACCCTACCATTTGCAACCCTTCCGCCACCAACGAGGGTACTCTTAGATCTGACATTTCATATTTGAAGGAAATGGCGTGGTAGATTAAGAGTATGTAAAAAATTGAGCAAGAACAAGAGCATGAGGGACTGATAAGGAAAAATTGTGAGCAAGAAGGTGAGAGGGGGAAAAGAGACAAAAATTGAACAAAACCTGGTGATGCTGACAAAAAGAAAGTTAAAAAAACTCTTCGTTCAAGTTTCAATCGAGCACGGTTTTTTAGATCATCCATACAAAAGCCTCTAGCTTTCTTTGCAGAGTCAGACAATCGTTCATGAGAATAACCGATCGAGGTGCATGCAAGTTGTCTCATATTAAAAACAGTCACATGAAAAAGGATGGTTCTATAACTTTTATTTGTATCCACCTCCGTTCTTATTGCCGTCATTTTACCGTTCAAATAAAGATAAAGTTTCTTGAGAAATTTCATGAAAATGCTCCTTAGATGGTCTCTGCTCCAAATTGGTGCGTACTTTGCCATGCTAATTCCGAAACAATTATTACATCTTGGTCTTTTGGGAATATGCTCAAACTTTTCCAAATGTTAAAATCCTTCGATTACCATATGGCTTTTCCAAATGAACCTCTAACCTTGTTGAGTATGATTTTCATTGGTCATCCTTTCAAGAGATATTATGGGAATTCATCGTCGAAGGATTCTTATGGCTTATTTGGAATGAGCTGAATCTTCGTACTTTTGAAGATAAAGAAACTGAATTCATTCAATTCTTTGACCATCTTATGTACACTTCTCTGTCTTGGTATAAATTCACGAAGTTTATTTTGTGATTACAACCTTACTTCTCTTATTGCACAAATGAATAGCTTCATGTAATCTCATTGGTTTTGTGTCCTTTTGTAATTTCACATAATCAATGAAATTATGATTGTCTGTGTTTATTAGCTTCATGGGTTTATATGAATTCCATTCTAAGAACCCGTTGGAACAGATGAAAAGACAATGGCCCATTGAAATAAGACTCTAGACTTACAATCTTAACCTTATTTTATTATTCATTTTTATTACTTTGTCCAGCCGCAGCTCAACCTATGATCCATTTTTGTTCTATCCCACTAGACCAATTGATTCGACAATTTGTGGGATGGAGCTCATAATTACTGTCCAAAAGCCTGAGCGATCAGATGGAAGATAGCAGCGAAATCTAAATGCTTTCATTAGAAAGCTAGAGTCAAAGTTTTGGAAGTTCAAACAATTATTTTGGTGAGTTGTTCCCTCTTGACATAACAAAGTTGTGTCATTAGCAATAATGATGGCATAGCTCATCTGACA

mRNA sequence

ATGGATATTCCTGCTAAGACCACCCCAAATTACAACCCCGTACGTGACATGGGCCCTCGTGCACTTGCCATTTCCTTGCCATTTTCTTGTGCTTTGGGTCTCCTCTCATCCATGACTGCTTCCACAATGGCGAGCAGAGCATACATTTGGGCTCATGCTTGTTTCCAGTTTGCTATAATCATCCTGTTTGCTCACGTATATTATGCAATACTTAATGTGAATGCCGTTCTCTCTGTTTTCCTTTCTGCACTCACCGGATTGGGGCTTGTTATCAGCATAAACTCACTTCTGATGGAGTATCTTAAGTGGAGAAGAAGAAGGCAATTGAGACCTGCCAATCAACAGACGGGAACAAGGAGTTGGCCGCAATTACAACAGCAGCTATATGACAGTAATTACCATCAACAGCATGAGCAGCGGTTGGAGCAAGAACGCCATCAACCACATTCTCAGCAGCAAGCTATTGAAAATCAAAATATGGAGTCATTAGAGAGTGCCGATCAGGAAGGAACAACTATTCTGAGACAACAGCTCACTGAGGTGCCAAAGCCGCAGCTCAACCTATGA

Coding sequence (CDS)

ATGGATATTCCTGCTAAGACCACCCCAAATTACAACCCCGTACGTGACATGGGCCCTCGTGCACTTGCCATTTCCTTGCCATTTTCTTGTGCTTTGGGTCTCCTCTCATCCATGACTGCTTCCACAATGGCGAGCAGAGCATACATTTGGGCTCATGCTTGTTTCCAGTTTGCTATAATCATCCTGTTTGCTCACGTATATTATGCAATACTTAATGTGAATGCCGTTCTCTCTGTTTTCCTTTCTGCACTCACCGGATTGGGGCTTGTTATCAGCATAAACTCACTTCTGATGGAGTATCTTAAGTGGAGAAGAAGAAGGCAATTGAGACCTGCCAATCAACAGACGGGAACAAGGAGTTGGCCGCAATTACAACAGCAGCTATATGACAGTAATTACCATCAACAGCATGAGCAGCGGTTGGAGCAAGAACGCCATCAACCACATTCTCAGCAGCAAGCTATTGAAAATCAAAATATGGAGTCATTAGAGAGTGCCGATCAGGAAGGAACAACTATTCTGAGACAACAGCTCACTGAGGTGCCAAAGCCGCAGCTCAACCTATGA

Protein sequence

MDIPAKTTPNYNPVRDMGPRALAISLPFSCALGLLSSMTASTMASRAYIWAHACFQFAIIILFAHVYYAILNVNAVLSVFLSALTGLGLVISINSLLMEYLKWRRRRQLRPANQQTGTRSWPQLQQQLYDSNYHQQHEQRLEQERHQPHSQQQAIENQNMESLESADQEGTTILRQQLTEVPKPQLNL*

Homology

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BLAST of Csa4G617320 vs. TrEMBL
Match: A0A0A0L1P6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G617320 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 7.4e-102
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 1


Query: 1   MDIPAKTTPNYNPVRDMGPRALAISLPFSCALGLLSSMTASTMASRAYIWAHACFQFAII 60
           MDIPAKTTPNYNPVRDMGPRALAISLPFSCALGLLSSMTASTMASRAYIWAHACFQFAII
Sbjct: 1   MDIPAKTTPNYNPVRDMGPRALAISLPFSCALGLLSSMTASTMASRAYIWAHACFQFAII 60

Query: 61  ILFAHVYYAILNVNAVLSVFLSALTGLGLVISINSLLMEYLKWRRRRQLRPANQQTGTRS 120
           ILFAHVYYAILNVNAVLSVFLSALTGLGLVISINSLLMEYLKWRRRRQLRPANQQTGTRS
Sbjct: 61  ILFAHVYYAILNVNAVLSVFLSALTGLGLVISINSLLMEYLKWRRRRQLRPANQQTGTRS 120

Query: 121 WPQLQQQLYDSNYHQQHEQRLEQERHQPHSQQQAIENQNMESLESADQEGTTILRQQLTE 180
           WPQLQQQLYDSNYHQQHEQRLEQERHQPHSQQQAIENQNMESLESADQEGTTILRQQLTE
Sbjct: 121 WPQLQQQLYDSNYHQQHEQRLEQERHQPHSQQQAIENQNMESLESADQEGTTILRQQLTE 180

Query: 181 VPKPQLNL 189
           VPKPQLNL
Sbjct: 181 VPKPQLNL 188

[Close]

BLAST of Csa4G617320 vs. TrEMBL
Match: F6H565_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01200 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.3e-39
Identity = 86/160 (53.75%), Postives = 112/160 (70.00%), Query Frame = 1


Query: 14  VRDMGPRALAISLPFSCALGLLSSMTASTMASRAYIWAHACFQFAIIILFAHVYYAILNV 73
           V ++GPRALAISLPFSC LGLLSSM ASTM S++YIWA+A FQFAI+ILFAH++Y ILNV
Sbjct: 361 VTNLGPRALAISLPFSCVLGLLSSMIASTMVSKSYIWAYASFQFAIVILFAHIFYTILNV 420

Query: 74  NAVLSVFLSALTGLGLVISINSLLMEYLKWRRRRQLRPANQQTGTRSWPQLQQQLYDSNY 133
           N +LSV LS+ TG G+ IS NSLL+EYL+WR  RQ+R ++Q       PQ     +  ++
Sbjct: 421 NPILSVLLSSFTGFGIAISTNSLLVEYLRWRASRQVRSSDQNNRGVQQPQRHHHHHHHHH 480

Query: 134 HQQHEQRLEQERHQPHSQQQAIENQNMESLESADQEGTTI 174
             Q +Q+ +Q++HQ H  Q  I+  N    ES+ QE   I
Sbjct: 481 QWQQQQQQQQQQHQ-HQLQDLIQESNTGPTESSRQEENRI 519

[Close]

BLAST of Csa4G617320 vs. TrEMBL
Match: M5WU15_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003767mg PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.0e-39
Identity = 92/167 (55.09%), Postives = 118/167 (70.66%), Query Frame = 1


Query: 14  VRDMGPRALAISLPFSCALGLLSSMTASTMASRAYIWAHACFQFAIIILFAHVYYAILNV 73
           V D+GPRALAISLPFSC LGLLSSM ASTM SR+YIWA+A FQFAI+ILFAH++Y +LNV
Sbjct: 362 VSDLGPRALAISLPFSCVLGLLSSMIASTMVSRSYIWAYASFQFAIVILFAHIFYTLLNV 421

Query: 74  NAVLSVFLSALTGLGLVISINSLLMEYLKWRRRRQLRPANQQTGTRSWPQLQQQLYDSNY 133
           N +LSV LS+ TG G+ IS NSLL+EYL+W+  RQL+ ++Q        QLQQ L     
Sbjct: 422 NPILSVLLSSFTGFGIAISTNSLLVEYLRWKSSRQLQSSHQHVHLHEL-QLQQHL----- 481

Query: 134 HQQHEQRLEQERHQPHSQQQAIENQNMESLESADQEGTTILRQQLTE 181
            Q+H+Q  +QE++Q H QQQ    + ME  ++  Q+    L+QQ  E
Sbjct: 482 -QEHQQWQQQEQYQRHYQQQR-RQRLMEDSQNQYQQRQQQLQQQEQE 520

[Close]

BLAST of Csa4G617320 vs. TrEMBL
Match: W9SC17_9ROSA (Putative E3 ubiquitin-protein ligase MARCH10 OS=Morus notabilis GN=L484_017719 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.0e-39
Identity = 91/164 (55.49%), Postives = 111/164 (67.68%), Query Frame = 1


Query: 14  VRDMGPRALAISLPFSCALGLLSSMTASTMASRAYIWAHACFQFAIIILFAHVYYAILNV 73
           V D+GPRALAISLPFSC LG+LSSM ASTM SR+YIWA+A FQFAI+ILFAH++Y ILNV
Sbjct: 335 VSDLGPRALAISLPFSCVLGILSSMIASTMVSRSYIWAYASFQFAIVILFAHIFYTILNV 394

Query: 74  NAVLSVFLSALTGLGLVISINSLLMEYLKWRRRRQLRPANQQTGTRSWPQLQQQLYDSNY 133
           N +LSV LS+ TG G+ IS N+LL+EYL+WR  RQL+   QQ       Q QQQ+    +
Sbjct: 395 NPILSVLLSSFTGFGIAISTNTLLVEYLRWRTNRQLQSTRQQIEIAL--QQQQQI----H 454

Query: 134 HQQHEQRLEQERH--------QPHSQQQAIENQNMESLESADQE 170
           HQQ +Q  EQ +H         P  QQQ  EN N     S+ Q+
Sbjct: 455 HQQQQQHQEQYQHHHLQPLSENPQQQQQQFENPNPGPTHSSRQQ 492

[Close]

BLAST of Csa4G617320 vs. TrEMBL
Match: B9IHF4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s02320g PE=4 SV=2)

HSP 1 Score: 168.7 bits (426), Expect = 6.8e-39
Identity = 86/162 (53.09%), Postives = 114/162 (70.37%), Query Frame = 1


Query: 14  VRDMGPRALAISLPFSCALGLLSSMTASTMASRAYIWAHACFQFAIIILFAHVYYAILNV 73
           V D+GPRALAISLPFSC LGLLSSM A+TM +R+YIWA+A FQFA++ILFAH++Y +LNV
Sbjct: 340 VSDLGPRALAISLPFSCVLGLLSSMIATTMVNRSYIWAYASFQFAVVILFAHIFYTVLNV 399

Query: 74  NAVLSVFLSALTGLGLVISINSLLMEYLKWRRRRQLRPANQQT--GTRSWPQLQQQLYDS 133
           N +LSV LS+ TG G+ IS NSLL+EYL+WR  R L+ ++QQ     +   QLQQQ    
Sbjct: 400 NPILSVLLSSFTGFGIAISTNSLLVEYLRWRSSRLLQYSHQQNNRAVQQAQQLQQQQSTQ 459

Query: 134 NYHQQHEQRLEQERHQPHSQQQAIENQNMESLESADQEGTTI 174
            +HQ+H+Q           +QQ++E+ N+ S +S  Q   TI
Sbjct: 460 TWHQEHQQ----------PRQQSVEDSNVGSTDSTRQREATI 491

[Close]

BLAST of Csa4G617320 vs. TAIR10
Match: AT5G60580.2 (AT5G60580.2 RING/U-box superfamily protein)

HSP 1 Score: 108.2 bits (269), Expect = 5.5e-24
Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = 1


Query: 14  VRDMGPRALAISLPFSCALGLLSSMTASTMA-------SRAYIWAHACFQFAIIILFAHV 73
           V +MG  A+AISLPFSC LGLL+SMTASTM         R ++W +A  QFA+++LFAH+
Sbjct: 360 VENMGTGAIAISLPFSCILGLLASMTASTMVLEYSYAVMRRFVWIYASVQFALVVLFAHI 419

Query: 74  YYAILNVNAVLSVFLSALTGLGLVISINSLLMEYLKWRRRRQLRPANQQ 116
           +Y+++ +  VLSV LS   G G+ I  +S+++E+++WRRR + R   QQ
Sbjct: 420 FYSVVKLQPVLSVLLSTFAGFGVCICGSSVMVEFVRWRRRWRARRLEQQ 468

[Close]

BLAST of Csa4G617320 vs. TAIR10
Match: AT3G09760.1 (AT3G09760.1 RING/U-box superfamily protein)

HSP 1 Score: 91.7 bits (226), Expect = 5.4e-19
Identity = 40/111 (36.04%), Postives = 70/111 (63.06%), Query Frame = 1


Query: 21  ALAISLPFSCALGLLSSMTASTMASRAYIWAHACFQFAIIILFAHVYYAILNVNAVLSVF 80
           A+A+SLPFSC LGL +SMTA+TM  + Y+W +A  QF +++ F+H+++ ++ +  V+++ 
Sbjct: 377 AIAVSLPFSCVLGLFASMTATTMVPKRYVWIYATTQFGLVVFFSHIFFTLVRMQPVVAIL 436

Query: 81  LSALTGLGLVISINSLLMEYLKWRRRRQLRPANQQTGTRSWPQLQQQLYDS 132
           L+ + G GL +S  + ++E+ KWRR      +N+     S  Q+ Q L ++
Sbjct: 437 LATIVGFGLTMSGTTGIVEFSKWRR------SNRTAELPSSSQVDQPLVET 481

[Close]

BLAST of Csa4G617320 vs. TAIR10
Match: AT5G03180.2 (AT5G03180.2 RING/U-box superfamily protein)

HSP 1 Score: 86.3 bits (212), Expect = 2.2e-17
Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = 1


Query: 16  DMGPRALAISLPFSCALGLLSSMTASTMASRAYIWAHACFQFAIIILFAHVYYAILNVNA 75
           DM   A+AI+LPFSC +GLL+SM ++TM  + Y+W +A  QF  ++LFA ++Y ++  + 
Sbjct: 359 DMKSSAVAIALPFSCIIGLLASMISTTMVKKNYVWIYATVQFGFVVLFAQLFYRVVRFDV 418

Query: 76  ---VLSVFLSALTGLGLVISINSLLMEYLKWRRRRQLRP 112
              V+ + L+ + G GL ++  + + EYLKWRR     P
Sbjct: 419 KQPVMCIVLATMIGFGLTMTGTTAINEYLKWRRSNSHLP 457

[Close]

BLAST of Csa4G617320 vs. TAIR10
Match: AT3G06330.1 (AT3G06330.1 RING/U-box superfamily protein)

HSP 1 Score: 85.9 bits (211), Expect = 2.9e-17
Identity = 35/93 (37.63%), Postives = 58/93 (62.37%), Query Frame = 1


Query: 14  VRDMGPRALAISLPFSCALGLLSSMTASTMASRAYIWAHACFQFAIIILFAHVYYAILNV 73
           +RD+  +A+ I+ PFS  LGLL+S+ A  +A R YIW +A  +FA++ +  H++YA + +
Sbjct: 326 IRDLNKQAIYIAAPFSLTLGLLASIFAIVLAIREYIWTYAALEFALVGMLVHIFYATVRL 385

Query: 74  NAVLSVFLSALTGLGLVISINSLLMEYLKWRRR 107
           +A  S+  + + G G+ + +NSL + Y  WR R
Sbjct: 386 SATYSILFAGILGFGIAVCLNSLYLHYFAWRVR 418

[Close]

BLAST of Csa4G617320 vs. TAIR10
Match: AT5G18760.1 (AT5G18760.1 RING/U-box superfamily protein)

HSP 1 Score: 68.6 bits (166), Expect = 4.9e-12
Identity = 30/87 (34.48%), Postives = 50/87 (57.47%), Query Frame = 1


Query: 14  VRDMGPRALAISLPFSCALGLLSSMTASTMASRAYIWAHACFQFAIIILFAHVYYAILNV 73
           +RD+  +A+ ++ PFS  L LL+S  A  +A R YIW +A  +FA++ L  H+ YA L V
Sbjct: 311 IRDLNSQAIFVAAPFSFTLALLASTFAVILAIREYIWTYAALEFALVALLVHLLYATLRV 370

Query: 74  NAVLSVFLSALTGLGLVISINSLLMEY 101
             + ++  + + G G+ + +N L + Y
Sbjct: 371 PVIYAMLFAGILGFGMAMCLNLLCICY 397

[Close]

BLAST of Csa4G617320 vs. NCBI nr
Match: gi|700199806|gb|KGN54964.1| (hypothetical protein Csa_4G617320 [Cucumis sativus])

HSP 1 Score: 377.9 bits (969), Expect = 1.1e-101
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 1


Query: 1   MDIPAKTTPNYNPVRDMGPRALAISLPFSCALGLLSSMTASTMASRAYIWAHACFQFAII 60
           MDIPAKTTPNYNPVRDMGPRALAISLPFSCALGLLSSMTASTMASRAYIWAHACFQFAII
Sbjct: 1   MDIPAKTTPNYNPVRDMGPRALAISLPFSCALGLLSSMTASTMASRAYIWAHACFQFAII 60

Query: 61  ILFAHVYYAILNVNAVLSVFLSALTGLGLVISINSLLMEYLKWRRRRQLRPANQQTGTRS 120
           ILFAHVYYAILNVNAVLSVFLSALTGLGLVISINSLLMEYLKWRRRRQLRPANQQTGTRS
Sbjct: 61  ILFAHVYYAILNVNAVLSVFLSALTGLGLVISINSLLMEYLKWRRRRQLRPANQQTGTRS 120

Query: 121 WPQLQQQLYDSNYHQQHEQRLEQERHQPHSQQQAIENQNMESLESADQEGTTILRQQLTE 180
           WPQLQQQLYDSNYHQQHEQRLEQERHQPHSQQQAIENQNMESLESADQEGTTILRQQLTE
Sbjct: 121 WPQLQQQLYDSNYHQQHEQRLEQERHQPHSQQQAIENQNMESLESADQEGTTILRQQLTE 180

Query: 181 VPKPQLNL 189
           VPKPQLNL
Sbjct: 181 VPKPQLNL 188

[Close]

BLAST of Csa4G617320 vs. NCBI nr
Match: gi|778695422|ref|XP_011653991.1| (PREDICTED: uncharacterized protein LOC101209559 [Cucumis sativus])

HSP 1 Score: 349.4 bits (895), Expect = 4.0e-93
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1


Query: 14  VRDMGPRALAISLPFSCALGLLSSMTASTMASRAYIWAHACFQFAIIILFAHVYYAILNV 73
           VRDMGPRALAISLPFSCALGLLSSMTASTMASRAYIWAHACFQFAIIILFAHVYYAILNV
Sbjct: 348 VRDMGPRALAISLPFSCALGLLSSMTASTMASRAYIWAHACFQFAIIILFAHVYYAILNV 407

Query: 74  NAVLSVFLSALTGLGLVISINSLLMEYLKWRRRRQLRPANQQTGTRSWPQLQQQLYDSNY 133
           NAVLSVFLSALTGLGLVISINSLLMEYLKWRRRRQLRPANQQTGTRSWPQLQQQLYDSNY
Sbjct: 408 NAVLSVFLSALTGLGLVISINSLLMEYLKWRRRRQLRPANQQTGTRSWPQLQQQLYDSNY 467

Query: 134 HQQHEQRLEQERHQPHSQQQAIENQNMESLESADQEGTTILRQQLTEVPKPQLNL 189
           HQQHEQRLEQERHQPHSQQQAIENQNMESLESADQEGTTILRQQLTEVPKPQLNL
Sbjct: 468 HQQHEQRLEQERHQPHSQQQAIENQNMESLESADQEGTTILRQQLTEVPKPQLNL 522

[Close]

BLAST of Csa4G617320 vs. NCBI nr
Match: gi|659129382|ref|XP_008464658.1| (PREDICTED: uncharacterized protein LOC103502492 [Cucumis melo])

HSP 1 Score: 329.3 bits (843), Expect = 4.3e-87
Identity = 168/175 (96.00%), Postives = 169/175 (96.57%), Query Frame = 1


Query: 14  VRDMGPRALAISLPFSCALGLLSSMTASTMASRAYIWAHACFQFAIIILFAHVYYAILNV 73
           VRDMGPRALAISLPFSCALGLLSSMTASTMASRAYIWAHACFQFAIIILFAHVYYAILNV
Sbjct: 349 VRDMGPRALAISLPFSCALGLLSSMTASTMASRAYIWAHACFQFAIIILFAHVYYAILNV 408

Query: 74  NAVLSVFLSALTGLGLVISINSLLMEYLKWRRRRQLRPANQQTGTRSWPQLQQQLYDSNY 133
           NA LSVFLSALTGLGLVISINSLLMEYLKWRRRRQLRPANQQTGTRSWPQLQQQLYDSNY
Sbjct: 409 NACLSVFLSALTGLGLVISINSLLMEYLKWRRRRQLRPANQQTGTRSWPQLQQQLYDSNY 468

Query: 134 HQQHEQRLEQERHQPHSQQQAIENQNMESLESADQEGTTILRQQLTEVPKPQLNL 189
           HQQHEQRLEQER+QPHSQQQAIENQNM S ESADQEG TI RQQLTEVPKP LNL
Sbjct: 469 HQQHEQRLEQERYQPHSQQQAIENQNMGSSESADQEG-TIQRQQLTEVPKPDLNL 522

[Close]

BLAST of Csa4G617320 vs. NCBI nr
Match: gi|302143497|emb|CBI22058.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 170.2 bits (430), Expect = 3.4e-39
Identity = 86/160 (53.75%), Postives = 112/160 (70.00%), Query Frame = 1


Query: 14  VRDMGPRALAISLPFSCALGLLSSMTASTMASRAYIWAHACFQFAIIILFAHVYYAILNV 73
           V ++GPRALAISLPFSC LGLLSSM ASTM S++YIWA+A FQFAI+ILFAH++Y ILNV
Sbjct: 360 VTNLGPRALAISLPFSCVLGLLSSMIASTMVSKSYIWAYASFQFAIVILFAHIFYTILNV 419

Query: 74  NAVLSVFLSALTGLGLVISINSLLMEYLKWRRRRQLRPANQQTGTRSWPQLQQQLYDSNY 133
           N +LSV LS+ TG G+ IS NSLL+EYL+WR  RQ+R ++Q       PQ     +  ++
Sbjct: 420 NPILSVLLSSFTGFGIAISTNSLLVEYLRWRASRQVRSSDQNNRGVQQPQRHHHHHHHHH 479

Query: 134 HQQHEQRLEQERHQPHSQQQAIENQNMESLESADQEGTTI 174
             Q +Q+ +Q++HQ H  Q  I+  N    ES+ QE   I
Sbjct: 480 QWQQQQQQQQQQHQ-HQLQDLIQESNTGPTESSRQEENRI 518

[Close]

BLAST of Csa4G617320 vs. NCBI nr
Match: gi|359485329|ref|XP_003633259.1| (PREDICTED: uncharacterized protein LOC100243829 isoform X1 [Vitis vinifera])

HSP 1 Score: 170.2 bits (430), Expect = 3.4e-39
Identity = 86/160 (53.75%), Postives = 112/160 (70.00%), Query Frame = 1


Query: 14  VRDMGPRALAISLPFSCALGLLSSMTASTMASRAYIWAHACFQFAIIILFAHVYYAILNV 73
           V ++GPRALAISLPFSC LGLLSSM ASTM S++YIWA+A FQFAI+ILFAH++Y ILNV
Sbjct: 361 VTNLGPRALAISLPFSCVLGLLSSMIASTMVSKSYIWAYASFQFAIVILFAHIFYTILNV 420

Query: 74  NAVLSVFLSALTGLGLVISINSLLMEYLKWRRRRQLRPANQQTGTRSWPQLQQQLYDSNY 133
           N +LSV LS+ TG G+ IS NSLL+EYL+WR  RQ+R ++Q       PQ     +  ++
Sbjct: 421 NPILSVLLSSFTGFGIAISTNSLLVEYLRWRASRQVRSSDQNNRGVQQPQRHHHHHHHHH 480

Query: 134 HQQHEQRLEQERHQPHSQQQAIENQNMESLESADQEGTTI 174
             Q +Q+ +Q++HQ H  Q  I+  N    ES+ QE   I
Sbjct: 481 QWQQQQQQQQQQHQ-HQLQDLIQESNTGPTESSRQEENRI 519

The following BLAST results are available for this feature:

BLAST of Csa4G617320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1P6_CUCSA	7.4e-102	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G617320 PE=4 SV=1	[more]
F6H565_VITVI	2.3e-39	53.75	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01200 PE=4 SV=...	[more]
M5WU15_PRUPE	4.0e-39	55.09	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003767mg PE=4 SV=1	[more]
W9SC17_9ROSA	4.0e-39	55.49	Putative E3 ubiquitin-protein ligase MARCH10 OS=Morus notabilis GN=L484_017719 P...	[more]
B9IHF4_POPTR	6.8e-39	53.09	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s02320g PE=4 SV=2	[more]

BLAST of Csa4G617320 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60580.2	5.5e-24	47.71	RING/U-box superfamily protein	[more]
AT3G09760.1	5.4e-19	36.04	RING/U-box superfamily protein	[more]
AT5G03180.2	2.2e-17	39.39	RING/U-box superfamily protein	[more]
AT3G06330.1	2.9e-17	37.63	RING/U-box superfamily protein	[more]
AT5G18760.1	4.9e-12	34.48	RING/U-box superfamily protein	[more]

BLAST of Csa4G617320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199806\|gb\|KGN54964.1\|	1.1e-101	100.00	hypothetical protein Csa_4G617320 [Cucumis sativus]	[more]
gi\|778695422\|ref\|XP_011653991.1\|	4.0e-93	100.00	PREDICTED: uncharacterized protein LOC101209559 [Cucumis sativus]	[more]
gi\|659129382\|ref\|XP_008464658.1\|	4.3e-87	96.00	PREDICTED: uncharacterized protein LOC103502492 [Cucumis melo]	[more]
gi\|302143497\|emb\|CBI22058.3\|	3.4e-39	53.75	unnamed protein product [Vitis vinifera]	[more]
gi\|359485329\|ref\|XP_003633259.1\|	3.4e-39	53.75	PREDICTED: uncharacterized protein LOC100243829 isoform X1 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0043170	macromolecule metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005774	vacuolar membrane
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0032440	2-alkenal reductase [NAD(P)] activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004672	protein kinase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU148026	cucumber EST collection version 3.0	transcribed_cluster
CU167737	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G617320.1	Csa4G617320.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU148026	CU148026	transcribed_cluster
CU167737	CU167737	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23012:SF25	RING/U-BOX DOMAIN-CONTAINING PROTEIN	coord: 14..165 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G617320	CSPI04G21850	Wild cucumber (PI 183967)	cpicuB181
Csa4G617320	Cucsa.058590	Cucumber (Gy14) v1	cgycuB042
Csa4G617320	CmoCh01G013850	Cucurbita moschata (Rifu)	cmocuB455

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G617320	Melon (DHL92) v3.5.1	cumeB268
Csa4G617320	Watermelon (Charleston Gray)	cuwcgB279
Csa4G617320	Watermelon (97103) v1	cuwmB349
Csa4G617320	Cucurbita pepo (Zucchini)	cpecuB565
Csa4G617320	Cucurbita pepo (Zucchini)	cpecuB573
Csa4G617320	Cucurbita pepo (Zucchini)	cpecuB786
Csa4G617320	Bottle gourd (USVL1VR-Ls)	culsiB283
Csa4G617320	Cucumber (Gy14) v2	cgybcuB166
Csa4G617320	Melon (DHL92) v3.6.1	cumedB287
Csa4G617320	Silver-seed gourd	carcuB0660
Csa4G617320	Silver-seed gourd	carcuB1060
Csa4G617320	Watermelon (97103) v2	cuwmbB279
Csa4G617320	Wax gourd	cuwgoB419
Csa4G617320	Cucumber (Chinese Long) v2	cucuB136
Csa4G617320	Cucurbita maxima (Rimu)	cmacuB025
Csa4G617320	Cucurbita maxima (Rimu)	cmacuB467
Csa4G617320	Cucurbita moschata (Rifu)	cmocuB016