Csa4G579870 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G579870
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Replication factor C subunit 5; contains IPR008921 (DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)
Location	Chr4 : 18969510 .. 18975580 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAGGGTCAAAGTTGAGTGCGACTACTGGGGATTTCGTTTCCCCCTCCTCATCAACCATCAGTTCTGTTTCTTTTTCCCGCCATTTCAAGCCTCGCCTAAACCTTCGCTCTCTCTTTCACTCACACTTCTTTTTTCTCTCTCCACACTCTCAAATCTCCATAGACCGGAGAAGATGTTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGACCAGATCACAGTTCACCAAGATGTAGCACAGAATCTCAAGAAATTGGTAACTGGTTTTCGTTGTTTTTTTTTTCCCTTGCATTCCTTATTTCATACTTCAATTTGGCGTTTTTTGATGTGGGTTTTCCATAAATTTTCTCCTAGGTTAATGAACAGGACTGCCCTCATTTGCTCTTTTATGGCCCCTCCGGTTCTGGGAAGAAAACCCTAGTCATGGCCCTTATCCGGCAGATGTTTGGACCCAGTGCGGATAAGGTATTGAATCTTGATGTTTATTCTTCTGTCTGGGAAACTTTGTGATCGTTGTTCTGTCTGTTTGTTGTGTTTTATCATCTCTTGCCTTTTGCCTGCAGGTGAAGGTGGAGAACAAAACGTGGAAAGTTGATGTAAGTTTCGGTTGTTTATGACAATGATTGATACAAAAGTTGAATTTACAATAAAAGGGGACAAGTTCTTAAATAACTACTTTTTTTGTTTTAAAAATTTGGCTTGATTTTTGGAAACATTGGTGGAGAGTAGATACCTAGGTAAGAAGTTTAGAGGTGGAAGGGATGTGTATAGACTTAATTTTCAAAAACTTAAAACCAAAAACCAATAACCAAATGGTTACCAAATTTGTCCTTAGTGATGCCATCTCCTTTCACATGTGTATGAAAGTAATTGAATTCAGATTCTGGGAAAGGAGATCTTCTAGTTGTCTGTTGATATGATTACTAGTTCAGAATGTTATAGATTAGCATAAAAATTTAACTTGTTGAAGATGTTATTTGGCTGTATAACTTTATGTTCTCATCATTATCACCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTTTCTATGCCCTTTCTTTTTCTTCTCAGGCTGGAACCAGAACTATTGATATAGAGTTGACAACCTTGTCAAGTGCCAACCATGTGGAGCTCACTCCTAGTGATGCAGGTTTCCAAGATAGGTATATTGTTCAAGAGATAATCAAAGAAATGGCAAAAAACAGACCAATTGATTCCAAAGGGAAAAGAGGACATAAAGGTGTTCATTTTTCCTCACCCCCTCCAACCATATTTATCAGTTGTTTATGCCCGAGAACTTATTTATTCTTTGTGGTTAATGCTTAAAAATGTTAATGATCTCACTAACAAACCAGTAAAATATCGATTTATTGCTTGTTTGGGATCTTGTTTTATTTACCAGTATGCTTGTATGTGCAAGATTATATATCTCTATAAGATATTGAGATTTTTAGTGCTGGTCATTTATCAGTTTTGGTTCTAAATGATGTTGATAAACTATCAAGAGAAGCTCAGCACTCTCTTAGGAGAACAATGGAGAAATATAGCTCGTACTGTAGGTTAATTCTTTGCTGCAATAGTTCATCAAGAGTTACTGAAGCAATCCGCTCTCGCTGCCTAAATGTGCGGATAAATGGACCTACAGAGGAGCAGGTCAGGATAGTTTTTTCTTTTTTTTTTTGTAATGTCTTATTTCCTTTTTGTTCTGAGGTATGAATTTGAGTAAACTAAATGATGGACTGGAAGAACGTAATAAAATGTCATGTCCTAACCAGTGTGATTATTTATAAATTTTAGCCACATTCAATTTGTTATTCGACTAAGAACTTGGAGTCAGACAACTATTGTAAACTGACGTCATATTAATAAAGGATGAAAACCTTCCCTATCTGTGGCAGTGATTGACCTAATTATTCTTCAATATGTTATTCTGGCAGTCTATGGGCAACAATTTTCTGGGTGTCTTAACTTAATATTTAAATGTAAGTAGGTCAAAGAATGCCTTTTCAAATGCTTACCTTGTATAGTTAGTGGTACCAATGCTGCTGTCAGAAAACCAAGCAGTTCACCCGGTTTTTGTTTTTTTGGGATAAGAAAATTCACTGCCATTTTCAATTTTTGTTTTATGCTTTTAAACAATTTAAAGCCTTTTCTAGTGATGCATATATTCAGTAGCTCCTGCCTTTAGTTGTCGTGTAATATATTCTACCTATATATGTACCCAAAGATTTTAGACTAGAAGGAAAAATTACGTTAGTGGATTAAGTGGATCAAGACTTTTGATTTGCAAGTTGTGGACAGTGGAAAGCCTGTTTCCTCTTTCATGGCGTGGTTTACATTTACCTGAAAACTTAGTCTTCAAAAGTATTTGTTGAAAGTTTAAAAATGTTATTGTAGTGATTCGAAAGCTGTTGAAAAAGTTACGTCCTTTCACCAGATTTTCAAGGTTTTAGAGTACATTGGAAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGTATTGCAGAAAAATCAAACAGGAGTTTGAGGAGAGCTATACTATCATTTGAGACTTGCCGTGTTCAACAGTTAGTCTCCACTGGGCCTCTTACAGATCTAAGTTTCTCTCACTTCTTATCATAAAAAATTACCTTGGTAAACAATCTTTAAGGATTGGGACTGAGCTGTTTATTTATTTTATTTTTTGGGTTAGGTATCCTTTTGTCAGCAACCAGGCAATACCACCAATGGATTGGGAGGAGTACATCACTGAGATAGCATCTGAAATAATGAAGGAGCAGAGTCCCAAAAGGTACCTCATGTACCTTTTTTTGTTGTATTCTGTACTATAACATACATCTCAATATCATATATGTGTGGTTTTCATACACATCAGTTGGGTACGTCTCTAACATTGTCATTCAAACTGCTTTTGATTCTTAAAATATGCCGTGCTAGTATTTTTCATTAACAAATAATTACATAAAGATAAGCAATCCTTGAACTTCTGTGGATGGTATCCTCCTTGATTATGGTGATCTCTGTCTGGTTTGGTCATGAATTGAATGAATGAAGATTCCTCTCCTTGTTGACCTTTTTGAGGAAGCAATGAGGATCTTGATCATCTTTGGTGGTCCCGTGATTATGCTTTGGCTGTCTAGACTTGTTTATTTCAATCGTTTGGCCTCAGGGTGGTTGGGCCTAGAGTTTGGCATTGATCGCATTGAGCCCTTGGTTCATCTCTCCTTTAGTGAGAAAAGCTAGATTTTGTTAACGAATGGCATTTGTGCTTTGTTATGGTGTCTTTGGGGTGAGAGAAATGATACCTTTTTTTGGAAGAGTGGAGCATTCTAGGGAGGGAGTTTAGTGTCCCACAGTCCCCTTTTTTGCTTCTGTGTGTAAGGACTTTTGTAATTAACCGTTAGGATTTTGGGGATTGTTATTTTTTTCTTGGTTTGCCTCTTGTATTCTTTCATTTTTTTCTCAATGAAAGTTTGGTAAAAAAGACACATGTTCTTGACTTTTGTTTTTGTCGAGCAGAGTTGTAGAAATGTGAAAAGTTGCAACTGCCTAATAGAAATATATATGTGGAGAACTAATAACTACTTTAACTGTCATATAACTAGTTGGAGAATTGTGTGAAGTCTGAAATAAATGGACATTATTTTTTTGCGTTTTAGATTATTCCAGGTCCGTGGGAAGTTATATGAGTTACTGGTTAATTGTATCCCTCCGGAGATCATATTGAAGGTAATCGTTCTTCCCCAATTTCTATTGATTTTTTTCTGTTTTAATGTGATACTCATATTATCTACTTACTCAGAGATTGCTTTATGAGTTACTCAAGAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCATTGGGCTGCATATTATGTAAGTTGAATTTTGGCCTCTCAATTCGTTTAAATTCTTTTTTTATTGTTCAACTTTTGATTCCAATATCATTGAAGTAATTTGTCCTCTTTTTCTAATATCAAGTTCTCCATGTTTTTCTTGTTTTGCAATTTCTCGAATTTTTTGGTCATAACTAACTAACAGATTAGATCCTACACTTGATAGATTGAATGTATGTGGACATATTGAAGACTAGTTTTTCAAAATTAAATATTTTTCTTTACTTTTGAAAGAAACACCAATTAAGTGTCGCCTCCAAAGCACTTTAAGAACCTGTGTTAAATTTGCTGAATATTGATGGGTGGAGAGGTTCTGAGCATTGAATAAAACAAACTTATATTGAGATCTATGATGGATATTGATAAAAGCAACGAAGTGAAGAATTTTAACCATATACGTCTTTCTTTTTTCCTCTGGTTCTATTAGTCTGTATAATTTCAACCATGTTTTAATCTCAACCTTATCTAGCCCATAGTTTTACAAGTCGGGAATTATTTACTTTTCAGATCTTCGTCATTTCATTTTCACAACTATTTACTTTCAAGCACGCTTCAATTTCCAACTTTGTCTAATATCATTGAATAAATACTGAAAAGTGAACTGGTTTGTGCACTTCACTTCATTTCCAATTTTCCATGCCATAGACAATTTGTTCCTAAACGACGTCTGGCTAAATTACCATCACAATCACATAAGAAGAATCATCTACTCATTTATGTTTGTATAATTTCTGAATACTATAGTGCGTTATATATCTACATGCATTAATTCAGCAATATGATATTACAGATGAGACATGGCTAAACCATCATGGATTGGCCTAGTAGTAAAAATAGGAGAAAGTCTCAATAACTAATTAAGAGGTCATGGTTCAATCCATGGTGTCCACCTTCTTAGGAAATTAATTTTCTACAAGTTTTCTTGACACCCAAATGTTGTAGAGTGCGGGCTGTTTCGTGAGATTAGTCGAGGTGCGTGTAAGCTGGTCCAGATACTTGGTGGATATGAAAAAAGAAAAAAAAAAGATGAAAGATGGTTGGATAGAGTTTCACCTTTTGTCCGATTTTTCATCTTTGGTTAACTCTTTTTCCAGGAACACAGGATGCGTCTTGGACAGAAAGCCATCTTCCACATAGAAGGTAAATGTATTTAGAATACACATAGCATGGAGTAAATGTTATTACACAAAAATATAACTTCTGTGTTCTTCTTACTTCCTCTGGTTCTATTAGTTAGCCTGGCTAACTTAGCCACAATCATAATTTCATTGTGAGAACCTTGAATCCATCAAATAATGGATAGATACTACCATACAATTTGATGGTTTGGATATGTTCGGCTATCCATGTTAAACCAAAAAAGAAATTGTTACCTGCAACTTTAGAGTAGTGAGTTTTGATAATGCATGCTTTTATATCATGAATTTGACTTTTCATGCTCTGACATTTTGTTGGTATACTTCCTAACTAGAAGTAAGATCAGTAACATATTCAATAATATTCTGTCTAATTACTTATATCTCTTAATTCTACCGTTCTAATATTCTTATCTCCTTATACATTTGTAAAAAGATTTCTTGTCTCAAGTTCTTTATGTTCTAACGTTTTGTTAATACAAATCTTGAAGAAGGCAAAATTGGCTCTGTCAGTCTTGATTTTTGAAGTATTTTTTTTGTCTGATGATGCAGCTTTTGTGGCGAAGTTCATGAGCATATACAAGACTTTCCTCATTTCAACATTCGGCTAAAGAGAAGAAAAGTAGAGCCTGAAATTAGGCAGTTTCAGTTGATTCAGGAAAAGCAATTGTAAGTTCATAGATCTGCTGTGACATTGAATCAAGTTAATCTGATGTATTTATTTTATCTTCTTTGGTCAGTTTGGTATGGTACTCTGGCTGTTCATCCTCCTTTAGGTTTTTTCTATTGGGGAACTTGAAGCTGCACTTTGACGGATTTGAACTGAATCTTACATGGGAGAAAAAAACTTCCAAGTCATTTTGTATCACTGATAGAGAAGAGAGGCCATGCTCCCATATTAGAAAATGGGCTGTTTCTTTCTCCTCTTTTTCTTGCTGGTATTTGTTGTTTGGTTAATTTGGAAACGTAGCTCTTATAGTTTATAATTAGAATTTAGTCTTCATGGTTTCAC

mRNA sequence

ATGTTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGACCAGATCACAGTTCACCAAGATGTAGCACAGAATCTCAAGAAATTGGTTAATGAACAGGACTGCCCTCATTTGCTCTTTTATGGCCCCTCCGGTTCTGGGAAGAAAACCCTAGTCATGGCCCTTATCCGGCAGATGTTTGGACCCAGTGCGGATAAGGTGAAGGTGGAGAACAAAACGTGGAAAGTTGATGCTGGAACCAGAACTATTGATATAGAGTTGACAACCTTGTCAAGTGCCAACCATGTGGAGCTCACTCCTAGTGATGCAGGTTTCCAAGATAGGTATATTGTTCAAGAGATAATCAAAGAAATGGCAAAAAACAGACCAATTGATTCCAAAGGGAAAAGAGGACATAAAGTTTTGGTTCTAAATGATGTTGATAAACTATCAAGAGAAGCTCAGCACTCTCTTAGGAGAACAATGGAGAAATATAGCTCGTACTGTAGGTTAATTCTTTGCTGCAATAGTTCATCAAGAGTTACTGAAGCAATCCGCTCTCGCTGCCTAAATGTGCGGATAAATGGACCTACAGAGGAGCAGATTTTCAAGGTTTTAGAGTACATTGGAAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGTATTGCAGAAAAATCAAACAGGAGTTTGAGGAGAGCTATACTATCATTTGAGACTTGCCGTGTTCAACAGTATCCTTTTGTCAGCAACCAGGCAATACCACCAATGGATTGGGAGGAGTACATCACTGAGATAGCATCTGAAATAATGAAGGAGCAGAGTCCCAAAAGATTATTCCAGGTCCGTGGGAAGTTATATGAGTTACTGGTTAATTGTATCCCTCCGGAGATCATATTGAAGAGATTGCTTTATGAGTTACTCAAGAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCATTGGGCTGCATATTATGAACACAGGATGCGTCTTGGACAGAAAGCCATCTTCCACATAGAAGCTTTTGTGGCGAAGTTCATGAGCATATACAAGACTTTCCTCATTTCAACATTCGGCTAA

Coding sequence (CDS)

ATGTTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGACCAGATCACAGTTCACCAAGATGTAGCACAGAATCTCAAGAAATTGGTTAATGAACAGGACTGCCCTCATTTGCTCTTTTATGGCCCCTCCGGTTCTGGGAAGAAAACCCTAGTCATGGCCCTTATCCGGCAGATGTTTGGACCCAGTGCGGATAAGGTGAAGGTGGAGAACAAAACGTGGAAAGTTGATGCTGGAACCAGAACTATTGATATAGAGTTGACAACCTTGTCAAGTGCCAACCATGTGGAGCTCACTCCTAGTGATGCAGGTTTCCAAGATAGGTATATTGTTCAAGAGATAATCAAAGAAATGGCAAAAAACAGACCAATTGATTCCAAAGGGAAAAGAGGACATAAAGTTTTGGTTCTAAATGATGTTGATAAACTATCAAGAGAAGCTCAGCACTCTCTTAGGAGAACAATGGAGAAATATAGCTCGTACTGTAGGTTAATTCTTTGCTGCAATAGTTCATCAAGAGTTACTGAAGCAATCCGCTCTCGCTGCCTAAATGTGCGGATAAATGGACCTACAGAGGAGCAGATTTTCAAGGTTTTAGAGTACATTGGAAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGTATTGCAGAAAAATCAAACAGGAGTTTGAGGAGAGCTATACTATCATTTGAGACTTGCCGTGTTCAACAGTATCCTTTTGTCAGCAACCAGGCAATACCACCAATGGATTGGGAGGAGTACATCACTGAGATAGCATCTGAAATAATGAAGGAGCAGAGTCCCAAAAGATTATTCCAGGTCCGTGGGAAGTTATATGAGTTACTGGTTAATTGTATCCCTCCGGAGATCATATTGAAGAGATTGCTTTATGAGTTACTCAAGAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCATTGGGCTGCATATTATGAACACAGGATGCGTCTTGGACAGAAAGCCATCTTCCACATAGAAGCTTTTGTGGCGAAGTTCATGAGCATATACAAGACTTTCCTCATTTCAACATTCGGCTAA

Protein sequence

MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFGPSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKNRPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG*

Homology

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BLAST of Csa4G579870 vs. Swiss-Prot
Match: RFC3_ARATH (Replication factor C subunit 3 OS=Arabidopsis thaliana GN=RFC3 PE=2 SV=1)

HSP 1 Score: 622.5 bits (1604), Expect = 2.9e-177
Identity = 298/354 (84.18%), Postives = 332/354 (93.79%), Query Frame = 1


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPK+LD++ VH+D+AQ LKKLV+EQDCPHLLFYGPSGSGKKTL+MAL++Q++G
Sbjct: 1   MLWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60

Query: 61  PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
            SA+KVKVEN+ WKVDAG+RTID+ELTTLSS NHVELTPSDAGFQDRYIVQEIIKEMAKN
Sbjct: 61  ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
           RPID+KGK+G+KVLVLN+VDKLSREAQHSLRRTMEKYSS CRLILCCNSSS+VTEAI+SR
Sbjct: 121 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR 180

Query: 181 CLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
           CLNVRIN P++E+I KVLE++ KKE LQLP GFA+RIAEKSNRSLRRAILS ETCRVQ Y
Sbjct: 181 CLNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNY 240

Query: 241 PFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 300
           PF  NQ I PMDWEEY+ EIA+++MKEQSPK+LFQVRGK+YELLVNCIPPE+ILKRLL+E
Sbjct: 241 PFTGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHE 300

Query: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 355
           LLKKLD+ELK EVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYK FLISTFG
Sbjct: 301 LLKKLDSELKLEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKNFLISTFG 354

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BLAST of Csa4G579870 vs. Swiss-Prot
Match: RFC5_ORYSJ (Replication factor C subunit 5 OS=Oryza sativa subsp. japonica GN=RFC5 PE=2 SV=1)

HSP 1 Score: 600.9 bits (1548), Expect = 9.1e-171
Identity = 286/354 (80.79%), Postives = 323/354 (91.24%), Query Frame = 1


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLD++TVH  VAQNLKKLV EQDCPHLLFYGPSGSGKKTLVMALI+QMFG
Sbjct: 1   MLWVDKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFG 60

Query: 61  PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
             ADKVK+ENKTWK+D G+R I+IEL  LSSA+HVE+ PSDAGFQDRY+VQE+IKEMAKN
Sbjct: 61  AGADKVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKN 120

Query: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
           RPID+KGKR  KVLVLN+VDKLSREAQHSLRRTMEKYS+ CRLILCCNSSS+VTEA+RSR
Sbjct: 121 RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR 180

Query: 181 CLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
           CLNVR+N P+E+QI +VLE+IGKKE LQLP GFA+RIA +SNR+LRRAIL FETC+VQQY
Sbjct: 181 CLNVRVNAPSEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQY 240

Query: 241 PFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 300
           PF SNQ  PP+DWE+Y++EIA++IMKEQSPKRLF VR K YELLVNCIPPE ILK+LL E
Sbjct: 241 PFTSNQVAPPLDWEQYVSEIAADIMKEQSPKRLFAVRQKFYELLVNCIPPESILKKLLAE 300

Query: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 355
           LLKKLD++LKHE+CHWAA+YEH+MRLG KAIFH+EAFVAKFMSIYK FL+STFG
Sbjct: 301 LLKKLDSDLKHEICHWAAHYEHKMRLGSKAIFHLEAFVAKFMSIYKEFLVSTFG 354

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BLAST of Csa4G579870 vs. Swiss-Prot
Match: RFC3_HUMAN (Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2)

HSP 1 Score: 389.0 bits (998), Expect = 5.4e-107
Identity = 187/348 (53.74%), Postives = 260/348 (74.71%), Query Frame = 1


Query: 2   LWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFGP 61
           LWVDKYRP +L ++  H++ A  L+ LV   D PHLL YGPSG+GKKT +M ++R+++G 
Sbjct: 3   LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query: 62  SADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKNR 121
             +K+++E++T    +  +   IE++T++S  H+E+ PSDAG  DR ++QE++K +A+++
Sbjct: 63  GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 122

Query: 122 PIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRC 181
            +++  +R  KV++L +VDKL+++AQH+LRRTMEKY S CRLILCCNS+S+V   IRSRC
Sbjct: 123 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 182

Query: 182 LNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYP 241
           L VR+  P+ E I  VL  + KKEGL LPS  A R+AEKS R+LR+A+L  E CRVQQYP
Sbjct: 183 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 242

Query: 242 FVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYEL 301
           F ++Q IP  DWE Y+ E A+ I+ +Q+P+RL +VRG+LYELL +CIPPEII+K LL EL
Sbjct: 243 FTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 302

Query: 302 LKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFL 350
           L   D +LK EV   AAYYEHR++LG KAI+H+EAFVAKFM++YK F+
Sbjct: 303 LHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347

[Close]

BLAST of Csa4G579870 vs. Swiss-Prot
Match: RFC3_MOUSE (Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=1 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 1.2e-106
Identity = 186/348 (53.45%), Postives = 259/348 (74.43%), Query Frame = 1


Query: 2   LWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFGP 61
           LWVDKYRP +L ++  H++ A  L+ LV   D PHLL YGPSG+GKKT +M ++R+++G 
Sbjct: 3   LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGI 62

Query: 62  SADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKNR 121
             +K+++E++T    +  +   IE++T++S  H+E+ PSDAG  DR ++QE++K +A+++
Sbjct: 63  GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 122

Query: 122 PIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRC 181
            +++  +R  KV++L +VDKL+++AQH+LRRTMEKY S CRLILCCNS+S+V   IRSRC
Sbjct: 123 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 182

Query: 182 LNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYP 241
           L VR+  P+ E I  VL  + +KEGL LPS  A R+AEKS R+LR+A+L  E CRVQQYP
Sbjct: 183 LAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYP 242

Query: 242 FVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYEL 301
           F  +Q IP  DWE Y+ E A+ I+ +Q+P+RL +VRG+LYELL +CIPPEII+K LL EL
Sbjct: 243 FTEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 302

Query: 302 LKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFL 350
           L   D +LK EV   AAYYEHR++LG KAI+H+EAFVAKFM++YK F+
Sbjct: 303 LHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347

[Close]

BLAST of Csa4G579870 vs. Swiss-Prot
Match: RFC3_BOVIN (Replication factor C subunit 3 OS=Bos taurus GN=RFC3 PE=2 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 1.6e-106
Identity = 186/348 (53.45%), Postives = 259/348 (74.43%), Query Frame = 1


Query: 2   LWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFGP 61
           LWVDKYRP +L Q+  H++ A  L+ LV   D PHLL YGPSG+GKKT +M ++R+++G 
Sbjct: 3   LWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query: 62  SADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKNR 121
             +K+++E++T    +  +   IE++T++S  H+E+ PSDAG  DR ++QE++K +A+++
Sbjct: 63  GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 122

Query: 122 PIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRC 181
            +++  ++  KV++L +VDKL+++AQH+LRRTMEKY S CRLILCCNS+S+V   IRSRC
Sbjct: 123 QLETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 182

Query: 182 LNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYP 241
           L VR+  P+ E I  VL  + KKEGL LP   A R+AEKS R+LR+A+L  E CRVQQYP
Sbjct: 183 LAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYP 242

Query: 242 FVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYEL 301
           F ++Q IP  DWE Y+ E A+ I+ +Q+P+RL +VRG+LYELL +CIPPEII+K LL EL
Sbjct: 243 FTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 302

Query: 302 LKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFL 350
           L   D +LK EV   AAYYEHR++LG KAI+H+EAFVAKFM++YK F+
Sbjct: 303 LHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347

[Close]

BLAST of Csa4G579870 vs. TrEMBL
Match: A0A0A0KYY3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G579870 PE=4 SV=1)

HSP 1 Score: 710.3 bits (1832), Expect = 1.2e-201
Identity = 354/354 (100.00%), Postives = 354/354 (100.00%), Query Frame = 1


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 61  PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
           PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN
Sbjct: 61  PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
           RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
           CLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY
Sbjct: 181 CLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240

Query: 241 PFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 300
           PFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE
Sbjct: 241 PFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 300

Query: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 355
           LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG
Sbjct: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 354

[Close]

BLAST of Csa4G579870 vs. TrEMBL
Match: M5XPG3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007842mg PE=4 SV=1)

HSP 1 Score: 654.1 bits (1686), Expect = 1.0e-184
Identity = 316/354 (89.27%), Postives = 341/354 (96.33%), Query Frame = 1


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQ  VHQD+AQNLKKLV EQDCPHLLFYGPSGSGKKTL++AL+RQ+FG
Sbjct: 1   MLWVDKYRPKTLDQAMVHQDIAQNLKKLVAEQDCPHLLFYGPSGSGKKTLIIALLRQIFG 60

Query: 61  PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
           PSADKVKVEN+TWKVDAG+RTIDIELTTLSS NH+EL PSDAGFQDRYIVQEIIKEMAKN
Sbjct: 61  PSADKVKVENRTWKVDAGSRTIDIELTTLSSTNHIELNPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
           RPID+KGK+G+K+LVLN+VDKLSREAQHSLRRTMEKYS+YCRLILCCNSSS+VTEAIRSR
Sbjct: 121 RPIDTKGKKGYKILVLNEVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSKVTEAIRSR 180

Query: 181 CLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
           CLNVRIN PTEEQI KVLE+IGKKEGLQLPSGF +RIAEKSNRSLRRAILSFETC VQQY
Sbjct: 181 CLNVRINAPTEEQIVKVLEFIGKKEGLQLPSGFPARIAEKSNRSLRRAILSFETCHVQQY 240

Query: 241 PFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 300
           PF SNQAIPPMDWEEY++EIAS+IMKEQSPKRL+QVR KLYELL+NCIPPEIILKRLL+E
Sbjct: 241 PFTSNQAIPPMDWEEYVSEIASDIMKEQSPKRLYQVRQKLYELLLNCIPPEIILKRLLFE 300

Query: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 355
           LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFH+EAFVAKFMSIYK FLI+ FG
Sbjct: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHLEAFVAKFMSIYKAFLIAAFG 354

[Close]

BLAST of Csa4G579870 vs. TrEMBL
Match: A0A151RK45_CAJCA (Replication factor C subunit 3 OS=Cajanus cajan GN=KK1_035610 PE=4 SV=1)

HSP 1 Score: 651.0 bits (1678), Expect = 8.5e-184
Identity = 313/354 (88.42%), Postives = 341/354 (96.33%), Query Frame = 1


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQ+ VH D+AQNLKKLV EQDCPHLLFYGPSGSGKKTLVMAL+RQMFG
Sbjct: 1   MLWVDKYRPKTLDQVMVHADIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALLRQMFG 60

Query: 61  PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
           P A+KVKVEN+TWKV+AG+R+ID+ELTTL+SANH+E++PSDAGFQDRY+VQE+IKEMAKN
Sbjct: 61  PGAEKVKVENRTWKVNAGSRSIDLELTTLASANHIEMSPSDAGFQDRYVVQEVIKEMAKN 120

Query: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
           RPID+KGK+G KVLVLNDVDKLSREAQHSLRRTMEKYS+YCRLILCCNSSSRVTEAIRSR
Sbjct: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
           CLNVRIN P EEQI +VLE+IGKKEGLQLP GFA+RIAEKSNR+LRRAILSFETCRVQQY
Sbjct: 181 CLNVRINAPREEQIVEVLEFIGKKEGLQLPPGFAARIAEKSNRNLRRAILSFETCRVQQY 240

Query: 241 PFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 300
           PF   Q IPPMDWEEYI+EIAS+IMKEQSPKRLFQVRGKLYELL+NCIPPEIILKRLLYE
Sbjct: 241 PFTVKQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYE 300

Query: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 355
           LL+KLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYK+FLI+TFG
Sbjct: 301 LLRKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKSFLIATFG 354

[Close]

BLAST of Csa4G579870 vs. TrEMBL
Match: C6TK80_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 649.8 bits (1675), Expect = 1.9e-183
Identity = 311/354 (87.85%), Postives = 342/354 (96.61%), Query Frame = 1


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQ+ VH D+A+NLKKLV EQDCPHLLFYGPSGSGKKTL+MAL+RQMFG
Sbjct: 1   MLWVDKYRPKTLDQVMVHTDIARNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFG 60

Query: 61  PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
           P A+KVKV+N+TWKVDAG+R++D+ELTTLSSANH+E++PSDAGFQDRYIVQE+IKEMAKN
Sbjct: 61  PGAEKVKVDNRTWKVDAGSRSLDLELTTLSSANHIEMSPSDAGFQDRYIVQEVIKEMAKN 120

Query: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
           RPID+KGK+G KVLVLNDVDKLSREAQHSLRRTMEKYS+YCRLILCCNSSSRVTEAIRSR
Sbjct: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
           CLNVRIN P+EEQI +VLE+IGKKEGLQLP GFA+RI EKSNR+LRRAILSFETCRVQQY
Sbjct: 181 CLNVRINAPSEEQIVEVLEFIGKKEGLQLPPGFAARIVEKSNRNLRRAILSFETCRVQQY 240

Query: 241 PFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 300
           PF + Q IPPMDWEEYI+EIAS+IMKEQSPKRLFQVRGKLYELL+NCIPPEIILKRLLYE
Sbjct: 241 PFTNKQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYE 300

Query: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 355
           LL+KLDAELKHEVCHWAAYYE+RMRLGQKAIFHIEAFVAKFMSIYK+FLISTFG
Sbjct: 301 LLRKLDAELKHEVCHWAAYYEYRMRLGQKAIFHIEAFVAKFMSIYKSFLISTFG 354

[Close]

BLAST of Csa4G579870 vs. TrEMBL
Match: I3SC80_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 647.9 bits (1670), Expect = 7.2e-183
Identity = 308/354 (87.01%), Postives = 344/354 (97.18%), Query Frame = 1


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQ+ VH DVAQNLKKLV EQDCPHLLFYGPSGSGKKTL+MAL+RQMFG
Sbjct: 1   MLWVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFG 60

Query: 61  PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
            +A+KVKVEN+TWKVDAG+R+ID+ELTTLSSA+H+E++PSDAGFQDRY+VQEIIKEMAKN
Sbjct: 61  TAAEKVKVENRTWKVDAGSRSIDLELTTLSSAHHIEMSPSDAGFQDRYVVQEIIKEMAKN 120

Query: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
           RPID+KGK+G KVLVLNDVDKLSREAQHSLRRTMEKYS+YCRLILCCNSSSRVTEAIRSR
Sbjct: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
           CLN+RIN P+EEQI +V+E+IGKKEGLQ+PSGFA+RIAEKSNR+LRRAILSFETCRVQQY
Sbjct: 181 CLNIRINAPSEEQIVEVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAILSFETCRVQQY 240

Query: 241 PFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 300
           PF + Q IPPMDWEEYI+EIAS+IMKEQ+PKRLFQVRGKLYELL+NCIPPE+ILKRLL+E
Sbjct: 241 PFTNRQTIPPMDWEEYISEIASDIMKEQNPKRLFQVRGKLYELLINCIPPEMILKRLLFE 300

Query: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 355
           LL+KLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMS+YK+FLI+TFG
Sbjct: 301 LLRKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSVYKSFLIATFG 354

[Close]

BLAST of Csa4G579870 vs. TAIR10
Match: AT5G27740.1 (AT5G27740.1 ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 622.5 bits (1604), Expect = 1.6e-178
Identity = 298/354 (84.18%), Postives = 332/354 (93.79%), Query Frame = 1


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPK+LD++ VH+D+AQ LKKLV+EQDCPHLLFYGPSGSGKKTL+MAL++Q++G
Sbjct: 1   MLWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60

Query: 61  PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
            SA+KVKVEN+ WKVDAG+RTID+ELTTLSS NHVELTPSDAGFQDRYIVQEIIKEMAKN
Sbjct: 61  ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
           RPID+KGK+G+KVLVLN+VDKLSREAQHSLRRTMEKYSS CRLILCCNSSS+VTEAI+SR
Sbjct: 121 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR 180

Query: 181 CLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
           CLNVRIN P++E+I KVLE++ KKE LQLP GFA+RIAEKSNRSLRRAILS ETCRVQ Y
Sbjct: 181 CLNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNY 240

Query: 241 PFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 300
           PF  NQ I PMDWEEY+ EIA+++MKEQSPK+LFQVRGK+YELLVNCIPPE+ILKRLL+E
Sbjct: 241 PFTGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHE 300

Query: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 355
           LLKKLD+ELK EVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYK FLISTFG
Sbjct: 301 LLKKLDSELKLEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKNFLISTFG 354

[Close]

BLAST of Csa4G579870 vs. TAIR10
Match: AT1G21690.3 (AT1G21690.3 ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 122.9 bits (307), Expect = 4.1e-28
Identity = 77/234 (32.91%), Postives = 114/234 (48.72%), Query Frame = 1


Query: 3   WVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFGPS 62
           WV+KYRPK +  +   ++V + L   +   DCPH+LFYGP G+GK T  +A+  Q+FGP 
Sbjct: 11  WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70

Query: 63  ADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDR--YIVQEIIKEMAKN 122
             K +V                          +EL  SD    DR   +V+  IK+ A  
Sbjct: 71  LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAAV 130

Query: 123 RPIDSKGKRGH-----KVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTE 182
               +  + G+     K+++L++ D ++ +AQ++LRRTME YS   R    CN  SR+ E
Sbjct: 131 AVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 190

Query: 183 AIRSRCLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAI 230
            + SRC   R    +EE +   + +I  +EGL L     S ++  S   LRRAI
Sbjct: 191 PLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAI 214

[Close]

BLAST of Csa4G579870 vs. TAIR10
Match: AT1G77470.1 (AT1G77470.1 replication factor C subunit 3)

HSP 1 Score: 110.5 bits (275), Expect = 2.1e-24
Identity = 64/227 (28.19%), Postives = 116/227 (51.10%), Query Frame = 1


Query: 3   WVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFGPS 62
           WV+KYRP++LD +  H+D+   + +L NE   PHLL YGP G+GK + ++A+ R+++GP 
Sbjct: 41  WVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGP- 100

Query: 63  ADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKNRP 122
               K  N   +++A                       D G     +V++ I++ A  + 
Sbjct: 101 ----KYRNMILELNAS---------------------DDRGID---VVRQQIQDFASTQS 160

Query: 123 IDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCL 182
             S GK   K+++L++ D ++++AQ +LRR +EKY+   R  L  N  +++  A++SRC 
Sbjct: 161 F-SLGKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGNHVNKIIPALQSRCT 220

Query: 183 NVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAI 230
             R        + + L+++ + E L +     + +   SN  +R+A+
Sbjct: 221 RFRFAPLDGVHMSQRLKHVIEAERLVVSDCGLAALVRLSNGDMRKAL 237

[Close]

BLAST of Csa4G579870 vs. TAIR10
Match: AT1G63160.1 (AT1G63160.1 replication factor C 2)

HSP 1 Score: 96.3 bits (238), Expect = 4.1e-20
Identity = 61/216 (28.24%), Postives = 108/216 (50.00%), Query Frame = 1


Query: 3   WVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFGPS 62
           WV+KYRP  +  I  ++D    L+ +  + + P+L+  GP G+GK T ++AL  ++ G +
Sbjct: 17  WVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGTN 76

Query: 63  ADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKNRP 122
             +  +E       +  R ID+                         V+  IK  A+ + 
Sbjct: 77  YKEAVLELNA----SDDRGIDV-------------------------VRNKIKMFAQKKV 136

Query: 123 IDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCL 182
               G+  HKV++L++ D ++  AQ +LRRT+E YS+  R  L CN+S+++ E I+SRC 
Sbjct: 137 TLPPGR--HKVVILDEADSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCA 196

Query: 183 NVRINGPTEEQIF-KVLEYIGKKEGLQLPSGFASRI 218
            VR +  +++QI  ++L  +  ++   +P G  + I
Sbjct: 197 LVRFSRLSDQQILGRLLVVVAAEKVPYVPEGLEAII 201

[Close]

BLAST of Csa4G579870 vs. TAIR10
Match: AT5G22010.1 (AT5G22010.1 replication factor C1)

HSP 1 Score: 56.6 bits (135), Expect = 3.6e-08
Identity = 57/249 (22.89%), Postives = 99/249 (39.76%), Query Frame = 1


Query: 3   WVDKYRPKTLDQITVHQDVAQNL--------------------KKLVNEQDCPHLLFYGP 62
           W +KYRPK  ++I  +Q +   L                    KKL +      +L  G 
Sbjct: 342 WTEKYRPKVPNEIVGNQSLVTQLHNWLSHWHDQFGGTGSKGKGKKLNDAGSKKAVLLSGT 401

Query: 63  SGSGKKTLVMALIRQMFGPSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDA 122
            G GK T    L+ QM G  A +V   +   K ++                         
Sbjct: 402 PGIGKTTSAK-LVSQMLGFQAVEVNASDSRGKANSNIA-------------------KGI 461

Query: 123 GFQDRYIVQEIIKEMAKNRPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTME--KYSSY 182
           G  +   V+E++   A     D + K    VL++++VD +S   +  +   +   K S  
Sbjct: 462 GGSNANSVKELVNNEAMAANFD-RSKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKI 521

Query: 183 CRLILCCNSSSRVTEAIRSRCLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEK 230
             + +C +  S+  +++ + CL +    PT++Q+ K L +I K EGL++       +AE+
Sbjct: 522 PIICICNDRYSQKLKSLVNYCLPLNYRKPTKQQMAKRLMHIAKAEGLEINEIALEELAER 569

[Close]

BLAST of Csa4G579870 vs. NCBI nr
Match: gi|449453820|ref|XP_004144654.1| (PREDICTED: replication factor C subunit 3 [Cucumis sativus])

HSP 1 Score: 710.3 bits (1832), Expect = 1.7e-201
Identity = 354/354 (100.00%), Postives = 354/354 (100.00%), Query Frame = 1


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 61  PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
           PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN
Sbjct: 61  PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
           RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
           CLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY
Sbjct: 181 CLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240

Query: 241 PFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 300
           PFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE
Sbjct: 241 PFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 300

Query: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 355
           LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG
Sbjct: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 354

[Close]

BLAST of Csa4G579870 vs. NCBI nr
Match: gi|659082797|ref|XP_008442036.1| (PREDICTED: replication factor C subunit 3 [Cucumis melo])

HSP 1 Score: 699.9 bits (1805), Expect = 2.3e-198
Identity = 348/354 (98.31%), Postives = 352/354 (99.44%), Query Frame = 1


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 61  PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
           PSA+KVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN
Sbjct: 61  PSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
           RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
           CLNVRINGPTEEQI KVLE+IGKKEGLQLPSGFASRIAEKS+RSLRRAILSFETCRVQQY
Sbjct: 181 CLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQY 240

Query: 241 PFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 300
           PFV NQAIPPMDWEEYITEIAS+IMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE
Sbjct: 241 PFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 300

Query: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 355
           LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG
Sbjct: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 354

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BLAST of Csa4G579870 vs. NCBI nr
Match: gi|596133502|ref|XP_007222214.1| (hypothetical protein PRUPE_ppa007842mg [Prunus persica])

HSP 1 Score: 654.1 bits (1686), Expect = 1.4e-184
Identity = 316/354 (89.27%), Postives = 341/354 (96.33%), Query Frame = 1


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQ  VHQD+AQNLKKLV EQDCPHLLFYGPSGSGKKTL++AL+RQ+FG
Sbjct: 1   MLWVDKYRPKTLDQAMVHQDIAQNLKKLVAEQDCPHLLFYGPSGSGKKTLIIALLRQIFG 60

Query: 61  PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
           PSADKVKVEN+TWKVDAG+RTIDIELTTLSS NH+EL PSDAGFQDRYIVQEIIKEMAKN
Sbjct: 61  PSADKVKVENRTWKVDAGSRTIDIELTTLSSTNHIELNPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
           RPID+KGK+G+K+LVLN+VDKLSREAQHSLRRTMEKYS+YCRLILCCNSSS+VTEAIRSR
Sbjct: 121 RPIDTKGKKGYKILVLNEVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSKVTEAIRSR 180

Query: 181 CLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
           CLNVRIN PTEEQI KVLE+IGKKEGLQLPSGF +RIAEKSNRSLRRAILSFETC VQQY
Sbjct: 181 CLNVRINAPTEEQIVKVLEFIGKKEGLQLPSGFPARIAEKSNRSLRRAILSFETCHVQQY 240

Query: 241 PFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 300
           PF SNQAIPPMDWEEY++EIAS+IMKEQSPKRL+QVR KLYELL+NCIPPEIILKRLL+E
Sbjct: 241 PFTSNQAIPPMDWEEYVSEIASDIMKEQSPKRLYQVRQKLYELLLNCIPPEIILKRLLFE 300

Query: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 355
           LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFH+EAFVAKFMSIYK FLI+ FG
Sbjct: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHLEAFVAKFMSIYKAFLIAAFG 354

[Close]

BLAST of Csa4G579870 vs. NCBI nr
Match: gi|645278268|ref|XP_008244154.1| (PREDICTED: replication factor C subunit 3 [Prunus mume])

HSP 1 Score: 652.9 bits (1683), Expect = 3.2e-184
Identity = 314/354 (88.70%), Postives = 341/354 (96.33%), Query Frame = 1


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQ  VHQD+AQNLKKLV+EQDCPHLLFYGPSGSGKKTL++AL+RQ+FG
Sbjct: 1   MLWVDKYRPKTLDQAMVHQDIAQNLKKLVSEQDCPHLLFYGPSGSGKKTLIIALLRQIFG 60

Query: 61  PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
           PSADKVKVEN+ WKVDAG+RTID+ELTTLSS NH+EL PSDAGFQDRYIVQEIIKEMAKN
Sbjct: 61  PSADKVKVENRAWKVDAGSRTIDLELTTLSSTNHIELNPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
           RPID+KGK+G+KVLVLN+VDKLSREAQHSLRRTMEKYS+YCRLILCCNSSS+VTEAIRSR
Sbjct: 121 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSKVTEAIRSR 180

Query: 181 CLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
           CLNVRIN PTEEQI KVLE++GKKEGLQLPSGFA+RIAEKSNRSLRRAILS ETC VQQY
Sbjct: 181 CLNVRINAPTEEQIMKVLEFVGKKEGLQLPSGFAARIAEKSNRSLRRAILSLETCHVQQY 240

Query: 241 PFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 300
           PF SNQAIPPMDWEEY++EIAS++MKEQSPKRL+QVR KLYELL+NCIPPEIILKRLLYE
Sbjct: 241 PFTSNQAIPPMDWEEYVSEIASDVMKEQSPKRLYQVRQKLYELLLNCIPPEIILKRLLYE 300

Query: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 355
           LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFH+EAFVAKFMSIYK FLI+ FG
Sbjct: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHLEAFVAKFMSIYKGFLIAAFG 354

[Close]

BLAST of Csa4G579870 vs. NCBI nr
Match: gi|645263495|ref|XP_008237263.1| (PREDICTED: replication factor C subunit 3-like [Prunus mume])

HSP 1 Score: 652.5 bits (1682), Expect = 4.2e-184
Identity = 316/354 (89.27%), Postives = 341/354 (96.33%), Query Frame = 1


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQ  VHQD+AQNLKKLV EQDCPHLLFYGPSGSGKKTL++AL+RQ+FG
Sbjct: 1   MLWVDKYRPKTLDQAMVHQDIAQNLKKLVAEQDCPHLLFYGPSGSGKKTLIIALLRQIFG 60

Query: 61  PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
           PSADKVKVEN+TWKVDAG+RTIDIELTTLSS NH+EL PSDAGFQDRYIVQEIIKEMAKN
Sbjct: 61  PSADKVKVENRTWKVDAGSRTIDIELTTLSSTNHIELNPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
           RPID+KGK+G+K+LVLN+VDKLSREAQHSLRRTMEKYS+YCRLILCCNSSS+VTEAIRSR
Sbjct: 121 RPIDTKGKKGYKILVLNEVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSKVTEAIRSR 180

Query: 181 CLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
           CLNVRI+ PTEEQI KVLE+IGKKEGLQLPSGF +RIAEKSNRSLRRAILSFETCRVQQY
Sbjct: 181 CLNVRIHAPTEEQIVKVLEFIGKKEGLQLPSGFPARIAEKSNRSLRRAILSFETCRVQQY 240

Query: 241 PFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 300
           PF SNQAIPPMDWEEY++EIAS+IMKEQSPKRL+QVR KLYELL+NCIPPEIILKRLL E
Sbjct: 241 PFTSNQAIPPMDWEEYVSEIASDIMKEQSPKRLYQVRQKLYELLLNCIPPEIILKRLLLE 300

Query: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 355
           LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFH+EAFVAKFMSIYK FLI+ FG
Sbjct: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHLEAFVAKFMSIYKAFLIAAFG 354

The following BLAST results are available for this feature:

BLAST of Csa4G579870 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RFC3_ARATH	2.9e-177	84.18	Replication factor C subunit 3 OS=Arabidopsis thaliana GN=RFC3 PE=2 SV=1	[more]
RFC5_ORYSJ	9.1e-171	80.79	Replication factor C subunit 5 OS=Oryza sativa subsp. japonica GN=RFC5 PE=2 SV=1	[more]
RFC3_HUMAN	5.4e-107	53.74	Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2	[more]
RFC3_MOUSE	1.2e-106	53.45	Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=1 SV=1	[more]
RFC3_BOVIN	1.6e-106	53.45	Replication factor C subunit 3 OS=Bos taurus GN=RFC3 PE=2 SV=1	[more]

BLAST of Csa4G579870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYY3_CUCSA	1.2e-201	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G579870 PE=4 SV=1	[more]
M5XPG3_PRUPE	1.0e-184	89.27	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007842mg PE=4 SV=1	[more]
A0A151RK45_CAJCA	8.5e-184	88.42	Replication factor C subunit 3 OS=Cajanus cajan GN=KK1_035610 PE=4 SV=1	[more]
C6TK80_SOYBN	1.9e-183	87.85	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
I3SC80_LOTJA	7.2e-183	87.01	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]

BLAST of Csa4G579870 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G27740.1	1.6e-178	84.18	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.3	4.1e-28	32.91	ATPase family associated with various cellular activities (AAA)	[more]
AT1G77470.1	2.1e-24	28.19	replication factor C subunit 3	[more]
AT1G63160.1	4.1e-20	28.24	replication factor C 2	[more]
AT5G22010.1	3.6e-08	22.89	replication factor C1	[more]

BLAST of Csa4G579870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453820\|ref\|XP_004144654.1\|	1.7e-201	100.00	PREDICTED: replication factor C subunit 3 [Cucumis sativus]	[more]
gi\|659082797\|ref\|XP_008442036.1\|	2.3e-198	98.31	PREDICTED: replication factor C subunit 3 [Cucumis melo]	[more]
gi\|596133502\|ref\|XP_007222214.1\|	1.4e-184	89.27	hypothetical protein PRUPE_ppa007842mg [Prunus persica]	[more]
gi\|645278268\|ref\|XP_008244154.1\|	3.2e-184	88.70	PREDICTED: replication factor C subunit 3 [Prunus mume]	[more]
gi\|645263495\|ref\|XP_008237263.1\|	4.2e-184	89.27	PREDICTED: replication factor C subunit 3-like [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003593	AAA+_ATPase
IPR008921	DNA_pol3_clamp-load_cplx_C
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006260	DNA replication

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU087246	cucumber EST collection version 3.0	transcribed_cluster
CU108592	cucumber EST collection version 3.0	transcribed_cluster
CU146535	cucumber EST collection version 3.0	transcribed_cluster
CU147376	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G579870.1	Csa4G579870.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU147376	CU147376	transcribed_cluster
CU087246	CU087246	transcribed_cluster
CU108592	CU108592	transcribed_cluster
CU146535	CU146535	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 33..192 score: 5.
IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	unknown	SSF48019	post-AAA+ oligomerization domain-like	coord: 251..346 score: 2.72
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 2..187 score: 3.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 3..239 score: 4.08
None	No IPR available	GENE3D	G3DSA:1.10.8.60		coord: 190..252 score: 1.7
None	No IPR available	GENE3D	G3DSA:1.20.272.10		coord: 253..346 score: 3.0
None	No IPR available	PANTHER	PTHR11669	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	coord: 1..353 score: 3.6E
None	No IPR available	PANTHER	PTHR11669:SF1	REPLICATION FACTOR C SUBUNIT 3	coord: 1..353 score: 3.6E
None	No IPR available	PFAM	PF13177	DNA_pol3_delta2	coord: 19..187 score: 4.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G579870	MELO3C008864	Melon (DHL92) v3.5.1	cumeB333
Csa4G579870	Lsi01G017070	Bottle gourd (USVL1VR-Ls)	culsiB252
Csa4G579870	MELO3C008864.2	Melon (DHL92) v3.6.1	cumedB322
Csa4G579870	CSPI04G21220	Wild cucumber (PI 183967)	cpicuB181
Csa4G579870	Cucsa.069740	Cucumber (Gy14) v1	cgycuB065
Csa4G579870	CmaCh03G002150	Cucurbita maxima (Rimu)	cmacuB674
Csa4G579870	CmoCh03G002250	Cucurbita moschata (Rifu)	cmocuB664
Csa4G579870	Cp4.1LG10g10960	Cucurbita pepo (Zucchini)	cpecuB077
Csa4G579870	CsGy4G019820	Cucumber (Gy14) v2	cgybcuB166
Csa4G579870	Carg23675	Silver-seed gourd	carcuB1044

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G579870	Watermelon (97103) v2	cuwmbB301
Csa4G579870	Wax gourd	cuwgoB404
Csa4G579870	Melon (DHL92) v3.5.1	cumeB332
Csa4G579870	Watermelon (Charleston Gray)	cuwcgB300
Csa4G579870	Watermelon (Charleston Gray)	cuwcgB303