Csa4G575360 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G575360
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 18903527 .. 18903823 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCACAGGGCGTTCGGTGGACGGTTGATGAAGCAAGCGGCGGCTTCACGAATCGGGACGATAGAGACGGAATGAAAGGGCTGAGCAACGACGCTCTGGCTTTAGCCCGACGAACGACAGCGTGTACGGCTGCTGGGCTTCGTCGAACGGAAAAGAGAAAGATGGTGGCAGAACATTTCGACTTCGATAGAGACAGCACCGATGACGGCGGACGGCTACTGAAAACGTCGCGTTGTGGCGTGACCGGCCGAAACGGAAGAATGGGAGAATGGAGACAGACGATGACTGGGTAG

mRNA sequence

ATGGCGGCACAGGGCGTTCGGTGGACGGTTGATGAAGCAAGCGGCGGCTTCACGAATCGGGACGATAGAGACGGAATGAAAGGGCTGAGCAACGACGCTCTGGCTTTAGCCCGACGAACGACAGCGTGTACGGCTGCTGGGCTTCGTCGAACGGAAAAGAGAAAGATGGTGGCAGAACATTTCGACTTCGATAGAGACAGCACCGATGACGGCGGACGGCTACTGAAAACGTCGCGTTGTGGCGTGACCGGCCGAAACGGAAGAATGGGAGAATGGAGACAGACGATGACTGGGTAG

Coding sequence (CDS)

ATGGCGGCACAGGGCGTTCGGTGGACGGTTGATGAAGCAAGCGGCGGCTTCACGAATCGGGACGATAGAGACGGAATGAAAGGGCTGAGCAACGACGCTCTGGCTTTAGCCCGACGAACGACAGCGTGTACGGCTGCTGGGCTTCGTCGAACGGAAAAGAGAAAGATGGTGGCAGAACATTTCGACTTCGATAGAGACAGCACCGATGACGGCGGACGGCTACTGAAAACGTCGCGTTGTGGCGTGACCGGCCGAAACGGAAGAATGGGAGAATGGAGACAGACGATGACTGGGTAG

Protein sequence

MAAQGVRWTVDEASGGFTNRDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVAEHFDFDRDSTDDGGRLLKTSRCGVTGRNGRMGEWRQTMTG*

Homology

[Close]

BLAST of Csa4G575360 vs. TrEMBL
Match: A0A0A0L1G4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G575360 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 7.7e-50
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 1  MAAQGVRWTVDEASGGFTNRDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVAEH 60
          MAAQGVRWTVDEASGGFTNRDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVAEH
Sbjct: 1  MAAQGVRWTVDEASGGFTNRDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVAEH 60

Query: 61 FDFDRDSTDDGGRLLKTSRCGVTGRNGRMGEWRQTMTG 99
          FDFDRDSTDDGGRLLKTSRCGVTGRNGRMGEWRQTMTG
Sbjct: 61 FDFDRDSTDDGGRLLKTSRCGVTGRNGRMGEWRQTMTG 98

[Close]

BLAST of Csa4G575360 vs. TrEMBL
Match: A0A0A0K8B4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G098740 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.1e-11
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1


Query: 26 MKGLSNDALALARRTTACTAAGLRRTEKRKMVAEHFDFDRDSTDDGG 73
          MK LS+DA  LARRT ACTAAGL +TEK+KMVAE F FDRDSTDDGG
Sbjct: 1  MKKLSDDASTLARRTVACTAAGLCQTEKKKMVAERFSFDRDSTDDGG 47

[Close]

BLAST of Csa4G575360 vs. TrEMBL
Match: A0A0A0KC31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G280200 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-07
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 1


Query: 20 RDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVA 59
          R +RD MKGLS+DALALARRT  CTAAGLRR EKRKMVA
Sbjct: 10 RTNRDRMKGLSDDALALARRTATCTAAGLRRMEKRKMVA 48

[Close]

BLAST of Csa4G575360 vs. NCBI nr
Match: gi|700199736|gb|KGN54894.1| (hypothetical protein Csa_4G575360 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 1.1e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 1  MAAQGVRWTVDEASGGFTNRDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVAEH 60
          MAAQGVRWTVDEASGGFTNRDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVAEH
Sbjct: 1  MAAQGVRWTVDEASGGFTNRDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVAEH 60

Query: 61 FDFDRDSTDDGGRLLKTSRCGVTGRNGRMGEWRQTMTG 99
          FDFDRDSTDDGGRLLKTSRCGVTGRNGRMGEWRQTMTG
Sbjct: 61 FDFDRDSTDDGGRLLKTSRCGVTGRNGRMGEWRQTMTG 98

[Close]

BLAST of Csa4G575360 vs. NCBI nr
Match: gi|700188773|gb|KGN44006.1| (hypothetical protein Csa_7G098740 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 5.9e-11
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1


Query: 26 MKGLSNDALALARRTTACTAAGLRRTEKRKMVAEHFDFDRDSTDDGG 73
          MK LS+DA  LARRT ACTAAGL +TEK+KMVAE F FDRDSTDDGG
Sbjct: 1  MKKLSDDASTLARRTVACTAAGLCQTEKKKMVAERFSFDRDSTDDGG 47

[Close]

BLAST of Csa4G575360 vs. NCBI nr
Match: gi|700192076|gb|KGN47280.1| (hypothetical protein Csa_6G280200 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-07
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 1


Query: 20 RDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVA 59
          R +RD MKGLS+DALALARRT  CTAAGLRR EKRKMVA
Sbjct: 10 RTNRDRMKGLSDDALALARRTATCTAAGLRRMEKRKMVA 48

The following BLAST results are available for this feature:

BLAST of Csa4G575360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1G4_CUCSA	7.7e-50	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G575360 PE=4 SV=1	[more]
A0A0A0K8B4_CUCSA	4.1e-11	78.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G098740 PE=4 SV=1	[more]
A0A0A0KC31_CUCSA	1.2e-07	82.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G280200 PE=4 SV=1	[more]

BLAST of Csa4G575360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199736\|gb\|KGN54894.1\|	1.1e-49	100.00	hypothetical protein Csa_4G575360 [Cucumis sativus]	[more]
gi\|700188773\|gb\|KGN44006.1\|	5.9e-11	78.72	hypothetical protein Csa_7G098740 [Cucumis sativus]	[more]
gi\|700192076\|gb\|KGN47280.1\|	1.8e-07	82.05	hypothetical protein Csa_6G280200 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G575360.1	Csa4G575360.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G575360	Watermelon (97103) v2	cuwmbB301
Csa4G575360	Wax gourd	cuwgoB404
Csa4G575360	Wax gourd	cuwgoB410
Csa4G575360	Cucurbita maxima (Rimu)	cmacuB670
Csa4G575360	Cucurbita maxima (Rimu)	cmacuB861
Csa4G575360	Cucurbita moschata (Rifu)	cmocuB658
Csa4G575360	Melon (DHL92) v3.5.1	cumeB332
Csa4G575360	Melon (DHL92) v3.5.1	cumeB336
Csa4G575360	Watermelon (Charleston Gray)	cuwcgB303
Csa4G575360	Watermelon (97103) v1	cuwmB334
Csa4G575360	Cucurbita pepo (Zucchini)	cpecuB071
Csa4G575360	Cucurbita pepo (Zucchini)	cpecuB498
Csa4G575360	Bottle gourd (USVL1VR-Ls)	culsiB259
Csa4G575360	Cucumber (Gy14) v2	cgybcuB166
Csa4G575360	Melon (DHL92) v3.6.1	cumedB326
Csa4G575360	Silver-seed gourd	carcuB0309