Csa4G555680 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G555680
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 18419937 .. 18420248 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAACATGGATTGCAGCATGCCGGAACACAGTCGGTCCGGCAAAGTTCTTGATCCCACAAGGCACATTTCTGGTGGGTCCGGTGACTTTCGCCGGTCCTTGCAAAAGCTTTCCCATCACCCTTGAAAATAAGGAACTGTAAAGGCCACCACCGATATTAGTGCATATTCATCTCCAGAATGGTTCTCCCTTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGTGTCTTTGACGGCCAAGGCCTCTCTGTTTGGCCCTACAACGATTGCAAGAAAAACAACTTATGCCAAATTCTTCCAATCGTAA

mRNA sequence

ATGACAACATGGATTGCAGCATGCCGGAACACAGTCGGTCCGGCAAAGTTCTTGATCCCACAAGGCACATTTCTGGTGGGTCCGAATGGTTCTCCCTTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGTGTCTTTGACGGCCAAGGCCTCTCTGTTTGGCCCTACAACGATTGCAAGAAAAACAACTTATGCCAAATTCTTCCAATCGTAA

Coding sequence (CDS)

ATGACAACATGGATTGCAGCATGCCGGAACACAGTCGGTCCGGCAAAGTTCTTGATCCCACAAGGCACATTTCTGGTGGGTCCGAATGGTTCTCCCTTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGTGTCTTTGACGGCCAAGGCCTCTCTGTTTGGCCCTACAACGATTGCAAGAAAAACAACTTATGCCAAATTCTTCCAATCGTAA

Protein sequence

MTTWIAACRNTVGPAKFLIPQGTFLVGPNGSPLKILLVSSSPAPVSLTAKASLFGPTTIARKTTYAKFFQS*

Homology

[Close]

BLAST of Csa4G555680 vs. TrEMBL
Match: A0A0A0L402_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G555680 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.2e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1


Query: 1  MTTWIAACRNTVGPAKFLIPQGTFLVGPNGSPLKILLVSSSPAPVSLTAKASLFGPTTIA 60
          MTTWIAACRNTVGPAKFLIPQGTFLVGPNGSPLKILLVSSSPAPVSLTAKASLFGPTTIA
Sbjct: 1  MTTWIAACRNTVGPAKFLIPQGTFLVGPNGSPLKILLVSSSPAPVSLTAKASLFGPTTIA 60

Query: 61 RKTTYAKFFQS 72
          RKTTYAKFFQS
Sbjct: 61 RKTTYAKFFQS 71

[Close]

BLAST of Csa4G555680 vs. TrEMBL
Match: A0A0A0K8F1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G354020 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.4e-29
Identity = 67/71 (94.37%), Postives = 67/71 (94.37%), Query Frame = 1


Query: 1   MTTWIAACRNTVGPAKFLIPQGTFLVGPNGSPLKILLVSSSPAPVSLTAKASLFGPTTIA 60
           MTTWIAACRNTVGPAKFLIPQGTFLVGPNGSPLKILLVSSSPAP SLTAKAS FGPTT A
Sbjct: 104 MTTWIAACRNTVGPAKFLIPQGTFLVGPNGSPLKILLVSSSPAPASLTAKASPFGPTTTA 163

Query: 61  RKTTYAKFFQS 72
           RKTTYA FFQS
Sbjct: 164 RKTTYANFFQS 174

[Close]

BLAST of Csa4G555680 vs. TrEMBL
Match: A0A0A0KMA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222970 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-07
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 1


Query: 1   MTTWIAACRNTVGPAKFLIPQGTFLVGP 29
           MTTWIAACRNTVGPAKFLIPQGTFLVGP
Sbjct: 76  MTTWIAACRNTVGPAKFLIPQGTFLVGP 103

[Close]

BLAST of Csa4G555680 vs. TrEMBL
Match: A0A0A0K588_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G353000 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-07
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 1


Query: 1   MTTWIAACRNTVGPAKFLIPQGTFLVGP 29
           MTTWIAACRNTVGPAKFLIPQGTFLVGP
Sbjct: 104 MTTWIAACRNTVGPAKFLIPQGTFLVGP 131

[Close]

BLAST of Csa4G555680 vs. TrEMBL
Match: A0A0A0KAZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398720 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.4e-07
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 1


Query: 1   MTTWIAACRNTVGPAKFLIPQGTFLVGP 29
           MTTWIAACRNTVGP KFLIPQGTFLVGP
Sbjct: 104 MTTWIAACRNTVGPTKFLIPQGTFLVGP 131

[Close]

BLAST of Csa4G555680 vs. NCBI nr
Match: gi|700199703|gb|KGN54861.1| (hypothetical protein Csa_4G555680 [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 7.5e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1


Query: 1  MTTWIAACRNTVGPAKFLIPQGTFLVGPNGSPLKILLVSSSPAPVSLTAKASLFGPTTIA 60
          MTTWIAACRNTVGPAKFLIPQGTFLVGPNGSPLKILLVSSSPAPVSLTAKASLFGPTTIA
Sbjct: 1  MTTWIAACRNTVGPAKFLIPQGTFLVGPNGSPLKILLVSSSPAPVSLTAKASLFGPTTIA 60

Query: 61 RKTTYAKFFQS 72
          RKTTYAKFFQS
Sbjct: 61 RKTTYAKFFQS 71

[Close]

BLAST of Csa4G555680 vs. NCBI nr
Match: gi|700189409|gb|KGN44642.1| (hypothetical protein Csa_7G354020 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-29
Identity = 67/71 (94.37%), Postives = 67/71 (94.37%), Query Frame = 1


Query: 1   MTTWIAACRNTVGPAKFLIPQGTFLVGPNGSPLKILLVSSSPAPVSLTAKASLFGPTTIA 60
           MTTWIAACRNTVGPAKFLIPQGTFLVGPNGSPLKILLVSSSPAP SLTAKAS FGPTT A
Sbjct: 104 MTTWIAACRNTVGPAKFLIPQGTFLVGPNGSPLKILLVSSSPAPASLTAKASPFGPTTTA 163

Query: 61  RKTTYAKFFQS 72
           RKTTYA FFQS
Sbjct: 164 RKTTYANFFQS 174

[Close]

BLAST of Csa4G555680 vs. NCBI nr
Match: gi|778708423|ref|XP_011656188.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-07
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 1


Query: 1   MTTWIAACRNTVGPAKFLIPQGTFLVGP 29
           MTTWIAACRNTVGPAKFLIPQGTFLVGP
Sbjct: 104 MTTWIAACRNTVGPAKFLIPQGTFLVGP 131

[Close]

BLAST of Csa4G555680 vs. NCBI nr
Match: gi|700189405|gb|KGN44638.1| (hypothetical protein Csa_7G353000 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-07
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 1


Query: 1   MTTWIAACRNTVGPAKFLIPQGTFLVGP 29
           MTTWIAACRNTVGPAKFLIPQGTFLVGP
Sbjct: 104 MTTWIAACRNTVGPAKFLIPQGTFLVGP 131

[Close]

BLAST of Csa4G555680 vs. NCBI nr
Match: gi|700195561|gb|KGN50738.1| (hypothetical protein Csa_5G222970 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-07
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 1


Query: 1   MTTWIAACRNTVGPAKFLIPQGTFLVGP 29
           MTTWIAACRNTVGPAKFLIPQGTFLVGP
Sbjct: 76  MTTWIAACRNTVGPAKFLIPQGTFLVGP 103

The following BLAST results are available for this feature:

BLAST of Csa4G555680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L402_CUCSA	5.2e-32	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G555680 PE=4 SV=1	[more]
A0A0A0K8F1_CUCSA	1.4e-29	94.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G354020 PE=4 SV=1	[more]
A0A0A0KMA6_CUCSA	1.2e-07	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222970 PE=3 SV=1	[more]
A0A0A0K588_CUCSA	1.2e-07	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G353000 PE=3 SV=1	[more]
A0A0A0KAZ2_CUCSA	3.4e-07	96.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398720 PE=3 SV=1	[more]

BLAST of Csa4G555680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199703\|gb\|KGN54861.1\|	7.5e-32	100.00	hypothetical protein Csa_4G555680 [Cucumis sativus]	[more]
gi\|700189409\|gb\|KGN44642.1\|	2.0e-29	94.37	hypothetical protein Csa_7G354020 [Cucumis sativus]	[more]
gi\|778708423\|ref\|XP_011656188.1\|	1.7e-07	100.00	PREDICTED: exopolygalacturonase-like [Cucumis sativus]	[more]
gi\|700189405\|gb\|KGN44638.1\|	1.7e-07	100.00	hypothetical protein Csa_7G353000 [Cucumis sativus]	[more]
gi\|700195561\|gb\|KGN50738.1\|	1.7e-07	100.00	hypothetical protein Csa_5G222970 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G555680.1	Csa4G555680.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G555680	Melon (DHL92) v3.5.1	cumeB332
Csa4G555680	Watermelon (Charleston Gray)	cuwcgB303
Csa4G555680	Watermelon (97103) v1	cuwmB334
Csa4G555680	Cucurbita pepo (Zucchini)	cpecuB071
Csa4G555680	Cucurbita pepo (Zucchini)	cpecuB498
Csa4G555680	Bottle gourd (USVL1VR-Ls)	culsiB259
Csa4G555680	Cucumber (Gy14) v2	cgybcuB166
Csa4G555680	Melon (DHL92) v3.6.1	cumedB321
Csa4G555680	Silver-seed gourd	carcuB0309
Csa4G555680	Silver-seed gourd	carcuB0874
Csa4G555680	Watermelon (97103) v2	cuwmbB301
Csa4G555680	Wax gourd	cuwgoB396
Csa4G555680	Wax gourd	cuwgoB404
Csa4G555680	Wax gourd	cuwgoB410
Csa4G555680	Cucumber (Gy14) v1	cgycuB501
Csa4G555680	Cucurbita maxima (Rimu)	cmacuB670
Csa4G555680	Cucurbita maxima (Rimu)	cmacuB861
Csa4G555680	Cucurbita moschata (Rifu)	cmocuB658
Csa4G555680	Cucurbita moschata (Rifu)	cmocuB849