Csa4G541630 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G541630
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 18195535 .. 18196410 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATATCACATTCATAACATAAAAGATTTTCTATGTAGCTATCATTGGCTAACATCCTTAACATGCATCATAGCTACGTTAATGCATACTAAGGGAAATCATAATATAATGGTCTAATAGTAGAATCTCTTACCTCGAGATTAACTAAATCAAATTTATTCCAGCTTCCAACAAGTAAAACCTAAACATCAATAAGTTTTAAATTAATAGTTTGATAACCACATTGAACTATTAAGTACTCAGGCTTACAAACTTACCAACGGAGGAGTTTGAAACCAATTCAACCTTGGTTGGGAGAAAATCACAACTCTAATAATACTCCAACAAAATTAGTCAACTTTCAAGTAAAAATAATCCAACTCATTTCAAATTGTAAACTTATTTAGAATCCAAGGGATAATTATTTGGGCGAACAAAACCCAACAAACTTACCAAAATATTAGATAGCCCCAATGGCTTAAGGAAAAATGAGTTTTGGCTTGCTAAATGGCTTAGGATGGAGATGGCTTGAACACGGGAGCATCGACTCACTTCAAGGAGGAGGTTAGCTTGGATGGGACACGTGGCTCGGCTTCGCGAGGAGGGGTAGATCAGATTTCTTGCACGCATGTGACTCAGAGGAAGATCGACTACAGGTTGAGCTTCAGTAGTCGGCAGACGGAGGAACGTCGGCTAGAACACTTTCGGCTTGCGAAGGAACGTTCGGGATGCGCAGCTTGTGATGGAAACGACTTTGATCTACAATGCATGGTGGAGACTTGTGACAGAGAAGAGGATGCGACGAAGACGAAGCTTCAAAATCGTTCGACCTTTGACGCGAAGTGGACAACTTCGTTTGAGCGTGGACTGAGCAGCTGCAGTCGTCGATGGTAG

mRNA sequence

ATGGATGGAGATGGCTTGAACACGGGAGCATCGACTCACTTCAAGGAGGAGGTTAGCTTGGATGGGACACGTGGCTCGGCTTCGCGAGGAGGGGTAGATCAGATTTCTTGCACGCATGTGACTCAGAGGAAGATCGACTACAGGTTGAGCTTCAGTAGTCGGCAGACGGAGGAACGTCGGCTAGAACACTTTCGGCTTGCGAAGGAACGTTCGGGATGCGCAGCTTGTGATGGAAACGACTTTGATCTACAATGCATGGTGGAGACTTGTGACAGAGAAGAGGATGCGACGAAGACGAAGCTTCAAAATCGTTCGACCTTTGACGCGAAGTGGACAACTTCGTTTGAGCGTGGACTGAGCAGCTGCAGTCGTCGATGGTAG

Coding sequence (CDS)

ATGGATGGAGATGGCTTGAACACGGGAGCATCGACTCACTTCAAGGAGGAGGTTAGCTTGGATGGGACACGTGGCTCGGCTTCGCGAGGAGGGGTAGATCAGATTTCTTGCACGCATGTGACTCAGAGGAAGATCGACTACAGGTTGAGCTTCAGTAGTCGGCAGACGGAGGAACGTCGGCTAGAACACTTTCGGCTTGCGAAGGAACGTTCGGGATGCGCAGCTTGTGATGGAAACGACTTTGATCTACAATGCATGGTGGAGACTTGTGACAGAGAAGAGGATGCGACGAAGACGAAGCTTCAAAATCGTTCGACCTTTGACGCGAAGTGGACAACTTCGTTTGAGCGTGGACTGAGCAGCTGCAGTCGTCGATGGTAG

Protein sequence

MDGDGLNTGASTHFKEEVSLDGTRGSASRGGVDQISCTHVTQRKIDYRLSFSSRQTEERRLEHFRLAKERSGCAACDGNDFDLQCMVETCDREEDATKTKLQNRSTFDAKWTTSFERGLSSCSRRW*
Homology
[Close]
BLAST of Csa4G541630 vs. TrEMBL
Match: A0A0A0L1B4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G541630 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.4e-67
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 

Query: 1   MDGDGLNTGASTHFKEEVSLDGTRGSASRGGVDQISCTHVTQRKIDYRLSFSSRQTEERR 60
           MDGDGLNTGASTHFKEEVSLDGTRGSASRGGVDQISCTHVTQRKIDYRLSFSSRQTEERR
Sbjct: 1   MDGDGLNTGASTHFKEEVSLDGTRGSASRGGVDQISCTHVTQRKIDYRLSFSSRQTEERR 60

Query: 61  LEHFRLAKERSGCAACDGNDFDLQCMVETCDREEDATKTKLQNRSTFDAKWTTSFERGLS 120
           LEHFRLAKERSGCAACDGNDFDLQCMVETCDREEDATKTKLQNRSTFDAKWTTSFERGLS
Sbjct: 61  LEHFRLAKERSGCAACDGNDFDLQCMVETCDREEDATKTKLQNRSTFDAKWTTSFERGLS 120

Query: 121 SCSRRW 127
           SCSRRW
Sbjct: 121 SCSRRW 126

[Close]
BLAST of Csa4G541630 vs. NCBI nr
Match: gi|700199691|gb|KGN54849.1| (hypothetical protein Csa_4G541630 [Cucumis sativus])

HSP 1 Score: 263.5 bits (672), Expect = 2.0e-67
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 

Query: 1   MDGDGLNTGASTHFKEEVSLDGTRGSASRGGVDQISCTHVTQRKIDYRLSFSSRQTEERR 60
           MDGDGLNTGASTHFKEEVSLDGTRGSASRGGVDQISCTHVTQRKIDYRLSFSSRQTEERR
Sbjct: 1   MDGDGLNTGASTHFKEEVSLDGTRGSASRGGVDQISCTHVTQRKIDYRLSFSSRQTEERR 60

Query: 61  LEHFRLAKERSGCAACDGNDFDLQCMVETCDREEDATKTKLQNRSTFDAKWTTSFERGLS 120
           LEHFRLAKERSGCAACDGNDFDLQCMVETCDREEDATKTKLQNRSTFDAKWTTSFERGLS
Sbjct: 61  LEHFRLAKERSGCAACDGNDFDLQCMVETCDREEDATKTKLQNRSTFDAKWTTSFERGLS 120

Query: 121 SCSRRW 127
           SCSRRW
Sbjct: 121 SCSRRW 126

The following BLAST results are available for this feature:
BLAST of Csa4G541630 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1B4_CUCSA1.4e-67100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G541630 PE=4 SV=1[more]
BLAST of Csa4G541630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199691|gb|KGN54849.1|2.0e-67100.00hypothetical protein Csa_4G541630 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G541630.1Csa4G541630.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G541630CsGy4G019400Cucumber (Gy14) v2cgybcuB166
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G541630Silver-seed gourdcarcuB0309
Csa4G541630Silver-seed gourdcarcuB0874
Csa4G541630Watermelon (97103) v2cuwmbB297
Csa4G541630Watermelon (97103) v2cuwmbB301
Csa4G541630Wax gourdcuwgoB397
Csa4G541630Cucumber (Gy14) v1cgycuB501
Csa4G541630Cucurbita maxima (Rimu)cmacuB670
Csa4G541630Cucurbita maxima (Rimu)cmacuB861
Csa4G541630Cucurbita moschata (Rifu)cmocuB658
Csa4G541630Cucurbita moschata (Rifu)cmocuB849
Csa4G541630Melon (DHL92) v3.5.1cumeB332
Csa4G541630Watermelon (Charleston Gray)cuwcgB303
Csa4G541630Watermelon (97103) v1cuwmB341
Csa4G541630Cucurbita pepo (Zucchini)cpecuB071
Csa4G541630Cucurbita pepo (Zucchini)cpecuB498
Csa4G541630Bottle gourd (USVL1VR-Ls)culsiB259
Csa4G541630Melon (DHL92) v3.6.1cumedB321