Csa4G540130 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G540130
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Cytosolic Fe-S cluster assembly factor nbp35
Location	Chr4 : 18172602 .. 18176318 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTTACGCTAATTCTGATAGATAATAAAACTTTAATCTGTTGAAACTTTAACTCCTACTTAAAAGAAAGACCCCATCAAAGAACGTATAAAGTTGAATAATTTTCTTCAATTTTGTCATTTCTTTTGACAATTCCCAAGGAAAAAAGAAAAAGAAAATGAGAATCAATACGGCCAACCTTCTTCTTCAACACGCACGCTAAGCCCCTAACCTTCCCCTCTCTTCTTCGCATAGCGCAAGTGAGAGCAACGCAGCTGCTCAAAGCTTGTCGTCCGTTCGCCTTCCACACTCGTCGCTCGCCACAGCCAGTAAGCCTAGTCTCTCTCTATCTCTTTATCTCTCTCCTTCGCGCCGATCCGGCAGAGTGCCTTGCGAAGACTCTCACCGCACCGCCAGCAGTCGAGCGCCGCCCTCACCCGTCACCGTCCACCCCTCTATTGACGCCGGAAGTCGCTGCAAGTCATCGGAATTTCTAGTTTTTGGGTGAGTTTCCTTGAGTTCTTAGAGTTTTTAGGAAGTATCTTGAATGCCCATTAGCTTTTGGCTTCAATTGGTCGATACCCATTACACTTGGGCTTTTATATCGAAGTTTTCAGGTGTTAAGAGTCGCAGTCATCAGGTTTGAAGCGGTTACGACCACTTTTTTTATATTAATCGGTTGTCCAAAACACTTTTAATGACTTGGTGATGGCTGGAATTGTAATCCTAATTTTTAATGTCATTATTGATCTAGGTTGAAAGTTTTTACGCCCTGTCCAGGGAAGTAAAGGTTGGTTTTTGGCGATATTGGGGTACGTGTTTGTTTTTGAAGCCCTTTGGAGTAGGTATGGATTTTCTGGAATTTGAACATCTAATACTTACTATTAAATTTGCATTGATTTTGAAATATTGGGGTACTATTAAATTTGCATTGATTTTGACCTCGTTTGGATCGTCGAGGTGATTGTTAGATTAAATCACAATTTGGTATGTTGTTTGAGTTTAAGTTGACTTGTGTTTTAGAATTAGGTCCTAAAGTTTGGAATTTGATTTGCCAATTTTGCACTGATTTTCTACTCTCTTTTTCCTCTTCTTCTTACGGTATTCTCCCTATCTTCATCGATGTGTTTCTTTTTGTAAGGACTTGTCTAATGAAAGAATAGAGTAGTTGTGTTGATTTTGTTTCCCAATGACAACAGGCCAAAAAAAAAAAAAAGAGGCTTGCCTTTTGAACTGCTGTTTGATTTGTTGCATATGTTTATCAATTGAGCCTTTCATAATCTGCATCTCTCTAGTCTCTGCTAAAAACTGTTTCATTTGTGGAACCATCAATTTTCTTGCATCTATGGTTTTATTTATCTATTAAAGAACTGTTGAAGTATAAATATGGCAAACAAGAACATTTTGTTTTGGTGAAATGAAATTGTAACCTTGGATGTTGAATGCAACAGGGTTATTTTGGTTGACCAAATGTCGGTAGGCAAAGCAATTGACCACTCAACACCCTGTAGAATGAAGAACCTAAATAATCTAGCAAAAGAACAAGATATAAGAAGGTGGCTTTGAGTTTCTGGGCCATTCTTGCGCATAATACAATGGCAAGGTGATAAAAGAAATCATAGATTTCCTTTGGAACTTATCACGAGTGTTCAAGCAAGATTGAATGAGTTTCCATAAAAGATCTGCTTTTTTGGAATATTGACCTATGCACATCATGCTGTATAAGTCTACCCTAGTATGAGAACTGAGTATGACAAAAATATAGAAATAGATTTAACAGAGAAACCTATTTTGTGAATCTTCCAAACAAAAAGTCCTTCCTATCTTTGAGTTCAACAAATGAAAGAGTTTTGGATAATCTAGCCCATTCATATGTCTGCCTCTGTAGGGTTCCTTTTGAGCCTTAGGTTTCCAAGATGCAGATTCAGAATATTGCCGATCAGCAATGATGGCCACCTTTTTGAGCTAGATAGCAAATAAATGTGGGAAATCAACTTTCAAGGGACGATTGGACTAGAAGCTGGTGTTAATTCCTTTCTCAATTTTGTAAGCAATATTCTTATAGATATTGCCCTTAACTCTACCTGTGTGTTTCTAGCTTTGTAGATGAAATGAGATTTCTCATGGAATCTCCTGATCCCTTTTGCCAAAAGGTATTTATTCTTCTGTTGAATGCCAATAATGCCAAGACCCTCTCATCAATAAGAAGAGTTACTTTGTACCATTTAATAGTTTGAGAACCAGAAATATCCTTACTGCCTGTTTGAAGGAAATTGTGAAACAATTTTTCAATCATATTTGATGCTTTGACCAGTAGAGTGAAAGAGGATAGGTAATGAATGGGAAGGTTAAAAAATGAAGCTTGTATGAGGGTATGGCGGCTAGCTTTAGAAATATAAGAGTTTCCCGAGAACATACACCTTTTTTCCACCTTTTCAACAACTGTAGCTCAAAGTCAAGAAGTGCTCCATGTCGCTAAGCAAGCTAACCCCTGTTCTTGATAAACTCTCTGTAATGGTGTTCCTCCATTTGGTAGCAACCACCCGCTGAATCGTAATTAAGGGTGGGAGGAAGTAAATTTGGATACTTTATTGATGTGAAGTCAATATTTGTTTCCAGGCTATACTGAAAATAAGTAAATCAGTAGTTGGACTTTGATGTTTCTAATTTCTTCTCCCTGGAAATGACGTGTTTGATTAGTTTGTGATTAGATGGCAGCATAATATGACATTCATAACTGCTTGTACCTGAATTTTTTCAGAGAGAGATTAAATATTATTTTATAAATTAATACAGAAAGAAAAATCATAGTAATGATTATTTTGTGTGCCTAGTGCATAACTGCATATGCATGGGAGAGCTTTTTAAAACACTAGTTTACCTCAAAAGAGGAGTGGAGGTTAATAAGATCCCATAAACTAAAAGTACTCATTTGATTTTCACCGACAGTTATATGATTTCTTTTGCAAAATGTGCCAATTGATAGGATAACAATCTTCCCATTGTTTGTTTACATCACTTATACTCGATCATTTTTTATATACTAGGTTAAACGGTTTAAGTACAGAATGCATCTTAACATCATTCCCATTCCCCTATAAATTAGCTTACAGAAATTATGAATTATTTGTTACAAGTTCGTTTTGAATTAATAAATGTGTCTGTTTCATGATAATGGTATATTGTATACGTGTTGCAAGAGACAGAGGCTTTCAACCAAATTTGATTCTTTAGAAGAAGCTTGGAAATGCTTGATAAAACCACATCAGTGTAAAAGAAAATCCATCGTGCTTGATCTGCAGTAGGAATTTTACTTCTTTAAGCACAGACCCATTCATATAATAAAGCTAATAGGTGAATGATTTTTCCTGCAAGGAAAGACATCAAATTCACAAAAAGCTCATCGGCATTGAAGAAGAAGACACAGCTAATGGAGAATAGCGAAATCCCTGAAAACGCCAATGAAAGTAATGGATTTCCTTCCTATTCATTGTATTTTTCATTTGTAGATTGTGCAACTTATTAGCCCCTTTTTGTTTTCTGTATTTCATTTTCATTGATGTTCTCTTTGTGGGTTTTTGGGTTTCAGATTGCCCGGGTCCTGAGTCGGAGTCAGCAGGGAAATCAGATGCCTGTCAAGGATGTCCCAACCAATCCATTTGTGCTACTGCACCTAAAGGCCCTGACCCAGGTTCTCTTTGTCTTGTAAATCTATTTGCTTTTTGTTTTTTGTAG

mRNA sequence

ATGAGCGCAAGTGAGAGCAACGCAGCTGCTCAAAGCTTGTCGTCCGTTCGCCTTCCACACTCGTCGCTCGCCACAGCCAGTAAGCCTAGTCTCTCTCTATCTCTTTATCTCTCTCCTTCGCGCCGATCCGGCAGAGTGCCTTGCGAAGACTCTCACCGCACCGCCAGCAGTCGAGCGCCGCCCTCACCCGTCACCGTCCACCCCTCTATTGACGCCGGAAGTCGCTGCAAGTCATCGGAATTTCTAGTTTTTGGGAAAGACATCAAATTCACAAAAAGCTCATCGGCATTGAAGAAGAAGACACAGCTAATGGAGAATAGCGAAATCCCTGAAAACGCCAATGAAAATTGCCCGGGTCCTGAGTCGGAGTCAGCAGGGAAATCAGATGCCTGTCAAGGATGTCCCAACCAATCCATTTGTGCTACTGCACCTAAAGGCCCTGACCCAGGTTCTCTTTGTCTTGTAAATCTATTTGCTTTTTGTTTTTTGTAG

Coding sequence (CDS)

ATGAGCGCAAGTGAGAGCAACGCAGCTGCTCAAAGCTTGTCGTCCGTTCGCCTTCCACACTCGTCGCTCGCCACAGCCAGTAAGCCTAGTCTCTCTCTATCTCTTTATCTCTCTCCTTCGCGCCGATCCGGCAGAGTGCCTTGCGAAGACTCTCACCGCACCGCCAGCAGTCGAGCGCCGCCCTCACCCGTCACCGTCCACCCCTCTATTGACGCCGGAAGTCGCTGCAAGTCATCGGAATTTCTAGTTTTTGGGAAAGACATCAAATTCACAAAAAGCTCATCGGCATTGAAGAAGAAGACACAGCTAATGGAGAATAGCGAAATCCCTGAAAACGCCAATGAAAATTGCCCGGGTCCTGAGTCGGAGTCAGCAGGGAAATCAGATGCCTGTCAAGGATGTCCCAACCAATCCATTTGTGCTACTGCACCTAAAGGCCCTGACCCAGGTTCTCTTTGTCTTGTAAATCTATTTGCTTTTTGTTTTTTGTAG

Protein sequence

MSASESNAAAQSLSSVRLPHSSLATASKPSLSLSLYLSPSRRSGRVPCEDSHRTASSRAPPSPVTVHPSIDAGSRCKSSEFLVFGKDIKFTKSSSALKKKTQLMENSEIPENANENCPGPESESAGKSDACQGCPNQSICATAPKGPDPGSLCLVNLFAFCFL*

Homology

[Close]

BLAST of Csa4G540130 vs. Swiss-Prot
Match: NBP35_ARATH (Cytosolic Fe-S cluster assembly factor NBP35 OS=Arabidopsis thaliana GN=NBP35 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.1e-17
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 1


Query: 104 MENSEIPENANENCPGPESESAGKSDACQGCPNQSICATAPKGPDP 150
           MEN +IPE+ANE+CPGP+SESAGKSD+C GCPNQ  CATAPKGPDP
Sbjct: 1   MENGDIPEDANEHCPGPQSESAGKSDSCAGCPNQEACATAPKGPDP 46

[Close]

BLAST of Csa4G540130 vs. Swiss-Prot
Match: NBP35_CRYNB (Cytosolic Fe-S cluster assembly factor NBP35 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=NBP35 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.7e-13
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1


Query: 109 IPENANENCPGPESESAGKSDACQGCPNQSICATAPKGPDP 150
           +PENA E+CPG ES  AGK+DAC+GCPNQS+CA  PKGPDP
Sbjct: 27  VPENAPEHCPGVESSQAGKADACEGCPNQSVCAEGPKGPDP 67

[Close]

BLAST of Csa4G540130 vs. Swiss-Prot
Match: NBP35_CRYNJ (Cytosolic Fe-S cluster assembly factor NBP35 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=NBP35 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.7e-13
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1


Query: 109 IPENANENCPGPESESAGKSDACQGCPNQSICATAPKGPDP 150
           +PENA E+CPG ES  AGK+DAC+GCPNQS+CA  PKGPDP
Sbjct: 27  VPENAPEHCPGVESSQAGKADACEGCPNQSVCAEGPKGPDP 67

[Close]

BLAST of Csa4G540130 vs. Swiss-Prot
Match: NBP35_ASPTN (Cytosolic Fe-S cluster assembly factor nbp35 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=nbp35 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.8e-12
Identity = 30/35 (85.71%), Postives = 30/35 (85.71%), Query Frame = 1


Query: 115 ENCPGPESESAGKSDACQGCPNQSICATAPKGPDP 150
           E+CPGPESE AGK DAC GCPNQ+ICATAPKGPDP
Sbjct: 29  EHCPGPESEQAGKGDACAGCPNQNICATAPKGPDP 63

[Close]

BLAST of Csa4G540130 vs. Swiss-Prot
Match: NBP35_COCIM (Cytosolic Fe-S cluster assembly factor NBP35 OS=Coccidioides immitis (strain RS) GN=NBP35 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-12
Identity = 30/35 (85.71%), Postives = 30/35 (85.71%), Query Frame = 1


Query: 115 ENCPGPESESAGKSDACQGCPNQSICATAPKGPDP 150
           E+CPGPESE AGK DAC GCPNQSICA+APKGPDP
Sbjct: 28  EHCPGPESEQAGKGDACAGCPNQSICASAPKGPDP 62

[Close]

BLAST of Csa4G540130 vs. TrEMBL
Match: A0A0A0KZC4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G540130 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 3.4e-87
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1


Query: 1   MSASESNAAAQSLSSVRLPHSSLATASKPSLSLSLYLSPSRRSGRVPCEDSHRTASSRAP 60
           MSASESNAAAQSLSSVRLPHSSLATASKPSLSLSLYLSPSRRSGRVPCEDSHRTASSRAP
Sbjct: 1   MSASESNAAAQSLSSVRLPHSSLATASKPSLSLSLYLSPSRRSGRVPCEDSHRTASSRAP 60

Query: 61  PSPVTVHPSIDAGSRCKSSEFLVFGKDIKFTKSSSALKKKTQLMENSEIPENANENCPGP 120
           PSPVTVHPSIDAGSRCKSSEFLVFGKDIKFTKSSSALKKKTQLMENSEIPENANENCPGP
Sbjct: 61  PSPVTVHPSIDAGSRCKSSEFLVFGKDIKFTKSSSALKKKTQLMENSEIPENANENCPGP 120

Query: 121 ESESAGKSDACQGCPNQSICATAPKGPDPGSLCLVNLFAFCFL 164
           ESESAGKSDACQGCPNQSICATAPKGPDPGSLCLVNLFAFCFL
Sbjct: 121 ESESAGKSDACQGCPNQSICATAPKGPDPGSLCLVNLFAFCFL 163

[Close]

BLAST of Csa4G540130 vs. TrEMBL
Match: A0A061F9B5_THECC (Cytosolic Fe-S cluster assembly factor NBP35 OS=Theobroma cacao GN=NBP35 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-18
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 1


Query: 100 KTQLMENSEIPENANENCPGPESESAGKSDACQGCPNQSICATAPKGPDPGSLCLVNLFA 159
           KT  MEN EIPENANE+CPGP SE+AGKSDACQGCPNQ +CATAPKGPDP  + +V   A
Sbjct: 44  KTAAMENGEIPENANEHCPGPNSETAGKSDACQGCPNQEVCATAPKGPDPDLVAIVERMA 103

[Close]

BLAST of Csa4G540130 vs. TrEMBL
Match: M5XPW9_PRUPE (Cytosolic Fe-S cluster assembly factor NBP35 OS=Prunus persica GN=NBP35 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-18
Identity = 63/137 (45.99%), Postives = 80/137 (58.39%), Query Frame = 1


Query: 29  PSLSLS--LYLSPSRRSGR-VPCEDSHRTASSRAPPSPVTVHPSIDAGSRCKSSEFLVFG 88
           PSLS S  L L+ S  S R + C    R+ S++   +P+      + G +     F V  
Sbjct: 6   PSLSPSRLLLLTVSLSSSRSLSCFQLGRSFSAQVG-TPICTVDIAEKGLKVSVKAFTV-- 65

Query: 89  KDIKFTKSSSALKKKTQ---LMENSEIPENANENCPGPESESAGKSDACQGCPNQSICAT 148
                 K S  LK K +   +MEN EIPENANE+CPGP+S+SAGKSDAC+GCPNQ ICAT
Sbjct: 66  ------KPSQYLKGKARPPIVMENGEIPENANEHCPGPQSDSAGKSDACEGCPNQQICAT 125

Query: 149 APKGPDPGSLCLVNLFA 160
           APKGPDP  + +    A
Sbjct: 126 APKGPDPDVVAIAERMA 133

[Close]

BLAST of Csa4G540130 vs. TrEMBL
Match: A0A126I632_PRUPE (Cytosolic Fe-S cluster assembly factor NBP35 OS=Prunus persica var. persica GN=NBP35-1 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-18
Identity = 63/137 (45.99%), Postives = 80/137 (58.39%), Query Frame = 1


Query: 29  PSLSLS--LYLSPSRRSGR-VPCEDSHRTASSRAPPSPVTVHPSIDAGSRCKSSEFLVFG 88
           PSLS S  L L+ S  S R + C    R+ S++   +P+      + G +     F V  
Sbjct: 6   PSLSPSRLLLLTVSLSSSRSLSCFQLGRSFSAQVG-TPICTVDIAEKGLKVSVKAFTV-- 65

Query: 89  KDIKFTKSSSALKKKTQ---LMENSEIPENANENCPGPESESAGKSDACQGCPNQSICAT 148
                 K S  LK K +   +MEN EIPENANE+CPGP+S+SAGKSDAC+GCPNQ ICAT
Sbjct: 66  ------KPSQYLKGKARPPIVMENGEIPENANEHCPGPQSDSAGKSDACEGCPNQQICAT 125

Query: 149 APKGPDPGSLCLVNLFA 160
           APKGPDP  + +    A
Sbjct: 126 APKGPDPDVVAIAERMA 133

[Close]

BLAST of Csa4G540130 vs. TrEMBL
Match: A0A0D2SRQ4_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_006G038800 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.5e-18
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 104 MENSEIPENANENCPGPESESAGKSDACQGCPNQSICATAPKGPDPGSLCLV 156
           MEN EIPENANE+CPGP+SESAGKSDACQGCPNQ +CATAPKGPDP  +  V
Sbjct: 8   MENGEIPENANEHCPGPQSESAGKSDACQGCPNQEVCATAPKGPDPERMATV 59

[Close]

BLAST of Csa4G540130 vs. TAIR10
Match: AT5G50960.1 (AT5G50960.1 nucleotide binding protein 35)

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-18
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 1


Query: 104 MENSEIPENANENCPGPESESAGKSDACQGCPNQSICATAPKGPDP 150
           MEN +IPE+ANE+CPGP+SESAGKSD+C GCPNQ  CATAPKGPDP
Sbjct: 1   MENGDIPEDANEHCPGPQSESAGKSDSCAGCPNQEACATAPKGPDP 46

[Close]

BLAST of Csa4G540130 vs. NCBI nr
Match: gi|700199690|gb|KGN54848.1| (hypothetical protein Csa_4G540130 [Cucumis sativus])

HSP 1 Score: 328.9 bits (842), Expect = 4.9e-87
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1


Query: 1   MSASESNAAAQSLSSVRLPHSSLATASKPSLSLSLYLSPSRRSGRVPCEDSHRTASSRAP 60
           MSASESNAAAQSLSSVRLPHSSLATASKPSLSLSLYLSPSRRSGRVPCEDSHRTASSRAP
Sbjct: 1   MSASESNAAAQSLSSVRLPHSSLATASKPSLSLSLYLSPSRRSGRVPCEDSHRTASSRAP 60

Query: 61  PSPVTVHPSIDAGSRCKSSEFLVFGKDIKFTKSSSALKKKTQLMENSEIPENANENCPGP 120
           PSPVTVHPSIDAGSRCKSSEFLVFGKDIKFTKSSSALKKKTQLMENSEIPENANENCPGP
Sbjct: 61  PSPVTVHPSIDAGSRCKSSEFLVFGKDIKFTKSSSALKKKTQLMENSEIPENANENCPGP 120

Query: 121 ESESAGKSDACQGCPNQSICATAPKGPDPGSLCLVNLFAFCFL 164
           ESESAGKSDACQGCPNQSICATAPKGPDPGSLCLVNLFAFCFL
Sbjct: 121 ESESAGKSDACQGCPNQSICATAPKGPDPGSLCLVNLFAFCFL 163

[Close]

BLAST of Csa4G540130 vs. NCBI nr
Match: gi|449453858|ref|XP_004144673.1| (PREDICTED: cytosolic Fe-S cluster assembly factor NBP35 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-19
Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = 1


Query: 104 MENSEIPENANENCPGPESESAGKSDACQGCPNQSICATAPKGPDPGSLCLVNLFA 160
           MENSEIPENANENCPGPESESAGKSDACQGCPNQSICATAPKGPDP  + +    A
Sbjct: 1   MENSEIPENANENCPGPESESAGKSDACQGCPNQSICATAPKGPDPDLISIAERMA 56

[Close]

BLAST of Csa4G540130 vs. NCBI nr
Match: gi|659083114|ref|XP_008442190.1| (PREDICTED: cytosolic Fe-S cluster assembly factor NBP35 [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-19
Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = 1


Query: 104 MENSEIPENANENCPGPESESAGKSDACQGCPNQSICATAPKGPDPGSLCLVNLFA 160
           MENSEIPENANENCPGPESESAGKSDACQGCPNQSICATAPKGPDP  + +    A
Sbjct: 1   MENSEIPENANENCPGPESESAGKSDACQGCPNQSICATAPKGPDPDLISIAERMA 56

[Close]

BLAST of Csa4G540130 vs. NCBI nr
Match: gi|590642704|ref|XP_007030592.1| (Nucleotide binding protein 35 [Theobroma cacao])

HSP 1 Score: 101.3 bits (251), Expect = 1.7e-18
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 1


Query: 100 KTQLMENSEIPENANENCPGPESESAGKSDACQGCPNQSICATAPKGPDPGSLCLVNLFA 159
           KT  MEN EIPENANE+CPGP SE+AGKSDACQGCPNQ +CATAPKGPDP  + +V   A
Sbjct: 44  KTAAMENGEIPENANEHCPGPNSETAGKSDACQGCPNQEVCATAPKGPDPDLVAIVERMA 103

[Close]

BLAST of Csa4G540130 vs. NCBI nr
Match: gi|596138339|ref|XP_007222379.1| (hypothetical protein PRUPE_ppa005998mg [Prunus persica])

HSP 1 Score: 100.9 bits (250), Expect = 2.2e-18
Identity = 63/137 (45.99%), Postives = 80/137 (58.39%), Query Frame = 1


Query: 29  PSLSLS--LYLSPSRRSGR-VPCEDSHRTASSRAPPSPVTVHPSIDAGSRCKSSEFLVFG 88
           PSLS S  L L+ S  S R + C    R+ S++   +P+      + G +     F V  
Sbjct: 6   PSLSPSRLLLLTVSLSSSRSLSCFQLGRSFSAQVG-TPICTVDIAEKGLKVSVKAFTV-- 65

Query: 89  KDIKFTKSSSALKKKTQ---LMENSEIPENANENCPGPESESAGKSDACQGCPNQSICAT 148
                 K S  LK K +   +MEN EIPENANE+CPGP+S+SAGKSDAC+GCPNQ ICAT
Sbjct: 66  ------KPSQYLKGKARPPIVMENGEIPENANEHCPGPQSDSAGKSDACEGCPNQQICAT 125

Query: 149 APKGPDPGSLCLVNLFA 160
           APKGPDP  + +    A
Sbjct: 126 APKGPDPDVVAIAERMA 133

The following BLAST results are available for this feature:

BLAST of Csa4G540130 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NBP35_ARATH	3.1e-17	80.43	Cytosolic Fe-S cluster assembly factor NBP35 OS=Arabidopsis thaliana GN=NBP35 PE...	[more]
NBP35_CRYNB	4.7e-13	73.17	Cytosolic Fe-S cluster assembly factor NBP35 OS=Cryptococcus neoformans var. neo...	[more]
NBP35_CRYNJ	4.7e-13	73.17	Cytosolic Fe-S cluster assembly factor NBP35 OS=Cryptococcus neoformans var. neo...	[more]
NBP35_ASPTN	1.8e-12	85.71	Cytosolic Fe-S cluster assembly factor nbp35 OS=Aspergillus terreus (strain NIH ...	[more]
NBP35_COCIM	2.3e-12	85.71	Cytosolic Fe-S cluster assembly factor NBP35 OS=Coccidioides immitis (strain RS)...	[more]

BLAST of Csa4G540130 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZC4_CUCSA	3.4e-87	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G540130 PE=4 SV=1	[more]
A0A061F9B5_THECC	1.2e-18	73.33	Cytosolic Fe-S cluster assembly factor NBP35 OS=Theobroma cacao GN=NBP35 PE=3 SV...	[more]
M5XPW9_PRUPE	1.5e-18	45.99	Cytosolic Fe-S cluster assembly factor NBP35 OS=Prunus persica GN=NBP35 PE=3 SV=...	[more]
A0A126I632_PRUPE	1.5e-18	45.99	Cytosolic Fe-S cluster assembly factor NBP35 OS=Prunus persica var. persica GN=N...	[more]
A0A0D2SRQ4_GOSRA	7.5e-18	80.77	Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_006G038800 PE=...	[more]

BLAST of Csa4G540130 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50960.1	1.8e-18	80.43	nucleotide binding protein 35	[more]

BLAST of Csa4G540130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199690\|gb\|KGN54848.1\|	4.9e-87	100.00	hypothetical protein Csa_4G540130 [Cucumis sativus]	[more]
gi\|449453858\|ref\|XP_004144673.1\|	1.2e-19	83.93	PREDICTED: cytosolic Fe-S cluster assembly factor NBP35 [Cucumis sativus]	[more]
gi\|659083114\|ref\|XP_008442190.1\|	1.2e-19	83.93	PREDICTED: cytosolic Fe-S cluster assembly factor NBP35 [Cucumis melo]	[more]
gi\|590642704\|ref\|XP_007030592.1\|	1.7e-18	73.33	Nucleotide binding protein 35 [Theobroma cacao]	[more]
gi\|596138339\|ref\|XP_007222379.1\|	2.2e-18	45.99	hypothetical protein PRUPE_ppa005998mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019591	Mrp/NBP35_ATP-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0071577	zinc II ion transmembrane transport
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005385	zinc ion transmembrane transporter activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU095811	cucumber EST collection version 3.0	transcribed_cluster
CU143430	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G540130.1	Csa4G540130.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU143430	CU143430	transcribed_cluster
CU095811	CU095811	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019591	Mrp/NBP35 ATP-binding protein	PANTHER	PTHR23264	NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED	coord: 49..149 score: 6.3
None	No IPR available	PANTHER	PTHR23264:SF32	CYTOSOLIC FE-S CLUSTER ASSEMBLY FACTOR NUBP2	coord: 49..149 score: 6.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G540130	CSPI04G20640	Wild cucumber (PI 183967)	cpicuB181

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G540130	Cucumber (Gy14) v1	cgycuB501
Csa4G540130	Cucurbita maxima (Rimu)	cmacuB670
Csa4G540130	Cucurbita maxima (Rimu)	cmacuB861
Csa4G540130	Cucurbita moschata (Rifu)	cmocuB658
Csa4G540130	Cucurbita moschata (Rifu)	cmocuB849
Csa4G540130	Melon (DHL92) v3.5.1	cumeB332
Csa4G540130	Watermelon (Charleston Gray)	cuwcgB303
Csa4G540130	Watermelon (97103) v1	cuwmB341
Csa4G540130	Cucurbita pepo (Zucchini)	cpecuB071
Csa4G540130	Cucurbita pepo (Zucchini)	cpecuB498
Csa4G540130	Bottle gourd (USVL1VR-Ls)	culsiB259
Csa4G540130	Cucumber (Gy14) v2	cgybcuB166
Csa4G540130	Melon (DHL92) v3.6.1	cumedB321
Csa4G540130	Silver-seed gourd	carcuB0309
Csa4G540130	Silver-seed gourd	carcuB0874
Csa4G540130	Watermelon (97103) v2	cuwmbB297
Csa4G540130	Watermelon (97103) v2	cuwmbB301
Csa4G540130	Wax gourd	cuwgoB397