Csa4G539590 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G539590
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 18159895 .. 18160071 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAGCAACGAAGAAGGAAGAAAGAAAGAGGAAAATGGGGTTTGTGAGATAGATGATTGGAAAAGTGGGAAGAAGAAGGGAAAAGTGAGTATTGTGTTGGGTGGGGCGGATTTGAAACGTGAGTCGCCATTAGTCATGAGGTCTGAAAGAGAAGGGGTTGAGTATGAGCCGTGA

mRNA sequence

ATGCAAAGCAACGAAGAAGGAAGAAAGAAAGAGGAAAATGGGGTTTGTGAGATAGATGATTGGAAAAGTGGGAAGAAGAAGGGAAAAGTGAGTATTGTGTTGGGTGGGGCGGATTTGAAACGTGAGTCGCCATTAGTCATGAGGTCTGAAAGAGAAGGGGTTGAGTATGAGCCGTGA

Coding sequence (CDS)

ATGCAAAGCAACGAAGAAGGAAGAAAGAAAGAGGAAAATGGGGTTTGTGAGATAGATGATTGGAAAAGTGGGAAGAAGAAGGGAAAAGTGAGTATTGTGTTGGGTGGGGCGGATTTGAAACGTGAGTCGCCATTAGTCATGAGGTCTGAAAGAGAAGGGGTTGAGTATGAGCCGTGA

Protein sequence

MQSNEEGRKKEENGVCEIDDWKSGKKKGKVSIVLGGADLKRESPLVMRSEREGVEYEP*
Homology
[Close]
BLAST of Csa4G539590 vs. TrEMBL
Match: A0A0A0KZC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G539590 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 5.1e-25
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 

Query: 1  MQSNEEGRKKEENGVCEIDDWKSGKKKGKVSIVLGGADLKRESPLVMRSEREGVEYEP 59
          MQSNEEGRKKEENGVCEIDDWKSGKKKGKVSIVLGGADLKRESPLVMRSEREGVEYEP
Sbjct: 1  MQSNEEGRKKEENGVCEIDDWKSGKKKGKVSIVLGGADLKRESPLVMRSEREGVEYEP 58

[Close]
BLAST of Csa4G539590 vs. TrEMBL
Match: A0A0A0L0M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G372600 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.1e-07
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 1 

Query: 1  MQSNEEGRKKEENGVCEIDDWKSG-------KKKGKVSIVLGGADLKRESPLVMRSERE 53
          MQ +EEGRKKEEN V E DDWKSG       KKKGKV IVLGG + +RE   V+R +RE
Sbjct: 1  MQRDEEGRKKEENEVRETDDWKSGKKKEKPLKKKGKVRIVLGGMNSERECD-VLRMQRE 58

[Close]
BLAST of Csa4G539590 vs. NCBI nr
Match: gi|700199685|gb|KGN54843.1| (hypothetical protein Csa_4G539590 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 7.3e-25
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 

Query: 1  MQSNEEGRKKEENGVCEIDDWKSGKKKGKVSIVLGGADLKRESPLVMRSEREGVEYEP 59
          MQSNEEGRKKEENGVCEIDDWKSGKKKGKVSIVLGGADLKRESPLVMRSEREGVEYEP
Sbjct: 1  MQSNEEGRKKEENGVCEIDDWKSGKKKGKVSIVLGGADLKRESPLVMRSEREGVEYEP 58

[Close]
BLAST of Csa4G539590 vs. NCBI nr
Match: gi|700199431|gb|KGN54589.1| (hypothetical protein Csa_4G372600 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 3.1e-07
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 1 

Query: 1  MQSNEEGRKKEENGVCEIDDWKSG-------KKKGKVSIVLGGADLKRESPLVMRSERE 53
          MQ +EEGRKKEEN V E DDWKSG       KKKGKV IVLGG + +RE   V+R +RE
Sbjct: 1  MQRDEEGRKKEENEVRETDDWKSGKKKEKPLKKKGKVRIVLGGMNSERECD-VLRMQRE 58

The following BLAST results are available for this feature:
BLAST of Csa4G539590 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZC0_CUCSA5.1e-25100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G539590 PE=4 SV=1[more]
A0A0A0L0M0_CUCSA2.1e-0761.02Uncharacterized protein OS=Cucumis sativus GN=Csa_4G372600 PE=4 SV=1[more]
BLAST of Csa4G539590 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199685|gb|KGN54843.1|7.3e-25100.00hypothetical protein Csa_4G539590 [Cucumis sativus][more]
gi|700199431|gb|KGN54589.1|3.1e-0761.02hypothetical protein Csa_4G372600 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G539590.1Csa4G539590.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G539590CSPI04G20590Wild cucumber (PI 183967)cpicuB181
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G539590Watermelon (97103) v2cuwmbB297
Csa4G539590Watermelon (97103) v2cuwmbB301
Csa4G539590Wax gourdcuwgoB397
Csa4G539590Cucumber (Gy14) v1cgycuB501
Csa4G539590Cucurbita maxima (Rimu)cmacuB670
Csa4G539590Cucurbita maxima (Rimu)cmacuB861
Csa4G539590Cucurbita moschata (Rifu)cmocuB658
Csa4G539590Cucurbita moschata (Rifu)cmocuB849
Csa4G539590Melon (DHL92) v3.5.1cumeB332
Csa4G539590Watermelon (Charleston Gray)cuwcgB303
Csa4G539590Watermelon (97103) v1cuwmB341
Csa4G539590Cucurbita pepo (Zucchini)cpecuB071
Csa4G539590Cucurbita pepo (Zucchini)cpecuB498
Csa4G539590Bottle gourd (USVL1VR-Ls)culsiB259
Csa4G539590Cucumber (Gy14) v2cgybcuB166
Csa4G539590Melon (DHL92) v3.6.1cumedB321
Csa4G539590Silver-seed gourdcarcuB0309
Csa4G539590Silver-seed gourdcarcuB0874