Csa4G526580 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G526580
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 18053855 .. 18054241 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCGAATGAAAAAATCATCGGCTGAAAAAGAGTGTGACTCTTGGGTCTGGATAAGCAGGACCTCTTGGTTCGGGGGAAACCGGAGATCTTGGCTAAGAAAGCTAAGCAGGCAAGTACAGGACGGAGAAAATGCACATACAAATTCTCAATATTCTTTGACCCTCTCCCTACGGTCGAGTCTCTTCGCCCCTCTCCCTCTCTCTTTGGCTAGTTGCGCGATAAGCGGGAAAGCCAGGCAGGGAAAGAAAGGCTCTCGCTCTCCTGTAAGGCCAACCCTCAACGGCGAGCTCACCAGGCAATGCTATAAGTCCGATAGAAGTCCAGGGTTTCGTCTACTACGGACCAGGAAGCTCTTGGACGAGATAAGACGAAATGTCTTTTGA

mRNA sequence

ATGAACCGAATGAAAAAATCATCGGCTGAAAAAGAGTGTGACTCTTGGGTCTGGATAAGCAGGACCTCTTGGTTCGGGGGAAACCGGAGATCTTGGCTAAGAAAGCTAAGCAGGCAAGTACAGGACGGAGAAAATGCACATACAAATTCTCAATATTCTTTGACCCTCTCCCTACGGTCGAGTCTCTTCGCCCCTCTCCCTCTCTCTTTGGCTAGTTGCGCGATAAGCGGGAAAGCCAGGCAGGGAAAGAAAGGCTCTCGCTCTCCTGTAAGGCCAACCCTCAACGGCGAGCTCACCAGGCAATGCTATAAGTCCGATAGAAGTCCAGGGTTTCGTCTACTACGGACCAGGAAGCTCTTGGACGAGATAAGACGAAATGTCTTTTGA

Coding sequence (CDS)

ATGAACCGAATGAAAAAATCATCGGCTGAAAAAGAGTGTGACTCTTGGGTCTGGATAAGCAGGACCTCTTGGTTCGGGGGAAACCGGAGATCTTGGCTAAGAAAGCTAAGCAGGCAAGTACAGGACGGAGAAAATGCACATACAAATTCTCAATATTCTTTGACCCTCTCCCTACGGTCGAGTCTCTTCGCCCCTCTCCCTCTCTCTTTGGCTAGTTGCGCGATAAGCGGGAAAGCCAGGCAGGGAAAGAAAGGCTCTCGCTCTCCTGTAAGGCCAACCCTCAACGGCGAGCTCACCAGGCAATGCTATAAGTCCGATAGAAGTCCAGGGTTTCGTCTACTACGGACCAGGAAGCTCTTGGACGAGATAAGACGAAATGTCTTTTGA

Protein sequence

MNRMKKSSAEKECDSWVWISRTSWFGGNRRSWLRKLSRQVQDGENAHTNSQYSLTLSLRSSLFAPLPLSLASCAISGKARQGKKGSRSPVRPTLNGELTRQCYKSDRSPGFRLLRTRKLLDEIRRNVF*

Homology

[Close]

BLAST of Csa4G526580 vs. TrEMBL
Match: A0A0A0KZB5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G526580 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.0e-67
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 1   MNRMKKSSAEKECDSWVWISRTSWFGGNRRSWLRKLSRQVQDGENAHTNSQYSLTLSLRS 60
           MNRMKKSSAEKECDSWVWISRTSWFGGNRRSWLRKLSRQVQDGENAHTNSQYSLTLSLRS
Sbjct: 1   MNRMKKSSAEKECDSWVWISRTSWFGGNRRSWLRKLSRQVQDGENAHTNSQYSLTLSLRS 60

Query: 61  SLFAPLPLSLASCAISGKARQGKKGSRSPVRPTLNGELTRQCYKSDRSPGFRLLRTRKLL 120
           SLFAPLPLSLASCAISGKARQGKKGSRSPVRPTLNGELTRQCYKSDRSPGFRLLRTRKLL
Sbjct: 61  SLFAPLPLSLASCAISGKARQGKKGSRSPVRPTLNGELTRQCYKSDRSPGFRLLRTRKLL 120

Query: 121 DEIRRNVF 129
           DEIRRNVF
Sbjct: 121 DEIRRNVF 128

[Close]

BLAST of Csa4G526580 vs. NCBI nr
Match: gi|700199680|gb|KGN54838.1| (hypothetical protein Csa_4G526580 [Cucumis sativus])

HSP 1 Score: 261.9 bits (668), Expect = 5.8e-67
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 1   MNRMKKSSAEKECDSWVWISRTSWFGGNRRSWLRKLSRQVQDGENAHTNSQYSLTLSLRS 60
           MNRMKKSSAEKECDSWVWISRTSWFGGNRRSWLRKLSRQVQDGENAHTNSQYSLTLSLRS
Sbjct: 1   MNRMKKSSAEKECDSWVWISRTSWFGGNRRSWLRKLSRQVQDGENAHTNSQYSLTLSLRS 60

Query: 61  SLFAPLPLSLASCAISGKARQGKKGSRSPVRPTLNGELTRQCYKSDRSPGFRLLRTRKLL 120
           SLFAPLPLSLASCAISGKARQGKKGSRSPVRPTLNGELTRQCYKSDRSPGFRLLRTRKLL
Sbjct: 61  SLFAPLPLSLASCAISGKARQGKKGSRSPVRPTLNGELTRQCYKSDRSPGFRLLRTRKLL 120

Query: 121 DEIRRNVF 129
           DEIRRNVF
Sbjct: 121 DEIRRNVF 128

The following BLAST results are available for this feature:

BLAST of Csa4G526580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZB5_CUCSA	4.0e-67	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G526580 PE=4 SV=1	[more]

BLAST of Csa4G526580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199680\|gb\|KGN54838.1\|	5.8e-67	100.00	hypothetical protein Csa_4G526580 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G526580.1	Csa4G526580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 124..128 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G526580	Cucumber (Gy14) v1	cgycuB501
Csa4G526580	Cucurbita maxima (Rimu)	cmacuB861
Csa4G526580	Cucurbita moschata (Rifu)	cmocuB658
Csa4G526580	Cucurbita moschata (Rifu)	cmocuB849
Csa4G526580	Melon (DHL92) v3.5.1	cumeB332
Csa4G526580	Watermelon (Charleston Gray)	cuwcgB303
Csa4G526580	Watermelon (97103) v1	cuwmB341
Csa4G526580	Cucurbita pepo (Zucchini)	cpecuB498
Csa4G526580	Bottle gourd (USVL1VR-Ls)	culsiB259
Csa4G526580	Cucumber (Gy14) v2	cgybcuB166
Csa4G526580	Melon (DHL92) v3.6.1	cumedB321
Csa4G526580	Silver-seed gourd	carcuB0309
Csa4G526580	Watermelon (97103) v2	cuwmbB297
Csa4G526580	Watermelon (97103) v2	cuwmbB301
Csa4G526580	Wax gourd	cuwgoB397