Csa4G507400 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G507400
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein; contains IPR010851 (S locus-related glycoprotein 1 binding pollen coat)
LocationChr4 : 17685269 .. 17685689 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTTGCAATTCACTCAACAAAATCAAGCTTGCACTCGCACCAAAAAGATGGCAAACCTTTCTTCTTTCCGTGTTGCCATCATTATAGTTATCTTTGCAGGTTCTCTTCTACATATGAATTGAATTATATATTTTTTAAATGAGAAGCTAAGTTATTATGAAGATATATTCATTGACATGCATAATGGTTGATTATTTTATTTACTCATGTGATCGTGCAGTTTCAATGATTTTGGTACCTCAAGGAACCTCAGCTTTGAAATGTCAAGATAGATTGTATGTTGGCGGGTGCATACAACATGAATGTGGGCAAAAATGTAGTCAGCTACACCATGGTGGCACATCTAAATGCATATCTACTGATCCTACGTTTACCAAGTATGCTTGTTATTGCTTCTATAATTGTCCTGAAAATTGA

mRNA sequence

ATGTTTTTGCAATTCACTCAACAAAATCAAGCTTGCACTCGCACCAAAAAGATGGCAAACCTTTCTTCTTTCCGTGTTGCCATCATTATAGTTATCTTTGCAGTTTCAATGATTTTGGTACCTCAAGGAACCTCAGCTTTGAAATGTCAAGATAGATTGTATGTTGGCGGGTGCATACAACATGAATGTGGGCAAAAATGTAGTCAGCTACACCATGGTGGCACATCTAAATGCATATCTACTGATCCTACGTTTACCAAGTATGCTTGTTATTGCTTCTATAATTGTCCTGAAAATTGA

Coding sequence (CDS)

ATGTTTTTGCAATTCACTCAACAAAATCAAGCTTGCACTCGCACCAAAAAGATGGCAAACCTTTCTTCTTTCCGTGTTGCCATCATTATAGTTATCTTTGCAGTTTCAATGATTTTGGTACCTCAAGGAACCTCAGCTTTGAAATGTCAAGATAGATTGTATGTTGGCGGGTGCATACAACATGAATGTGGGCAAAAATGTAGTCAGCTACACCATGGTGGCACATCTAAATGCATATCTACTGATCCTACGTTTACCAAGTATGCTTGTTATTGCTTCTATAATTGTCCTGAAAATTGA

Protein sequence

MFLQFTQQNQACTRTKKMANLSSFRVAIIIVIFAVSMILVPQGTSALKCQDRLYVGGCIQHECGQKCSQLHHGGTSKCISTDPTFTKYACYCFYNCPEN*
Homology
[Close]
BLAST of Csa4G507400 vs. TrEMBL
Match: A0A0A0KYP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G507400 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.7e-52
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   MFLQFTQQNQACTRTKKMANLSSFRVAIIIVIFAVSMILVPQGTSALKCQDRLYVGGCIQ 60
           MFLQFTQQNQACTRTKKMANLSSFRVAIIIVIFAVSMILVPQGTSALKCQDRLYVGGCIQ
Sbjct: 1   MFLQFTQQNQACTRTKKMANLSSFRVAIIIVIFAVSMILVPQGTSALKCQDRLYVGGCIQ 60

Query: 61  HECGQKCSQLHHGGTSKCISTDPTFTKYACYCFYNCPEN 100
           HECGQKCSQLHHGGTSKCISTDPTFTKYACYCFYNCPEN
Sbjct: 61  HECGQKCSQLHHGGTSKCISTDPTFTKYACYCFYNCPEN 99

[Close]
BLAST of Csa4G507400 vs. TrEMBL
Match: A0A0A0LVZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G172580 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.3e-16
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 1 

Query: 18 MANLSSFRVAIIIVIFAVSMILVPQGTSALKCQDRLYVGGCIQHECGQKCSQLHHGGTSK 77
          M  L S  +  I++I AV+MI +PQG  A +CQD LY  GC   +CGQKC + HH  + +
Sbjct: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60

Query: 78 CISTDPTFTKYACYCFYNC 97
          CI TDP  T YACYCFY C
Sbjct: 61 CIPTDPDQTIYACYCFYTC 79

[Close]
BLAST of Csa4G507400 vs. TrEMBL
Match: A0A0A0L2R3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G576870 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.9e-12
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 1 

Query: 21 LSSFRVAIIIVIFAVSMILVPQGTSAL-KCQDRLYVGGCIQHECGQKCSQLHHGGTSKCI 80
          + S R+    +IFAV+++L  Q  SA  +CQD LY  GC  ++CG+KC + HH  + +CI
Sbjct: 1  MDSSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCI 60

Query: 81 STDPTFTKYACYCFYNC 97
           T+P+ T YACYCF++C
Sbjct: 61 PTNPSQTIYACYCFFDC 77

[Close]
BLAST of Csa4G507400 vs. TrEMBL
Match: A0A0A0KU45_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G634350 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.3e-08
Identity = 25/58 (43.10%), Postives = 38/58 (65.52%), Query Frame = 1 

Query: 39 LVPQGTSALKCQDRLYVGGCIQHECGQKCSQLHHGGTSKCISTDPTFTKYACYCFYNC 97
          ++P G SA KC+ +LY  GC+  +C QKCS  +   +S+C++  P    Y+CYCFY+C
Sbjct: 21 IMPNGVSATKCETKLY-DGCLPKDCTQKCSDKYPNSSSECVAVPPIPFHYSCYCFYDC 77

[Close]
BLAST of Csa4G507400 vs. TrEMBL
Match: A0A0A0KS76_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G634340 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-07
Identity = 29/80 (36.25%), Postives = 49/80 (61.25%), Query Frame = 1 

Query: 18 MANLSSFRVAIIIVIFAVSMILVPQGTSALKCQDRLYVGGCIQHECGQKCSQLH-HGGTS 77
          M+ +SS +  I+ ++ +V+ + +P+  +A  C D+LY  GC+  EC Q+CS  + +  +S
Sbjct: 1  MSRISSSQFFIVFLLLSVAWMGMPKVANAKVCADKLYDVGCVADECKQRCSAKYPNDSSS 60

Query: 78 KCISTDPTFTKYACYCFYNC 97
          +C+S  P     AC CFYNC
Sbjct: 61 QCLSLPPIPFHNACLCFYNC 80

[Close]
BLAST of Csa4G507400 vs. NCBI nr
Match: gi|700199652|gb|KGN54810.1| (hypothetical protein Csa_4G507400 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 2.4e-52
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   MFLQFTQQNQACTRTKKMANLSSFRVAIIIVIFAVSMILVPQGTSALKCQDRLYVGGCIQ 60
           MFLQFTQQNQACTRTKKMANLSSFRVAIIIVIFAVSMILVPQGTSALKCQDRLYVGGCIQ
Sbjct: 1   MFLQFTQQNQACTRTKKMANLSSFRVAIIIVIFAVSMILVPQGTSALKCQDRLYVGGCIQ 60

Query: 61  HECGQKCSQLHHGGTSKCISTDPTFTKYACYCFYNCPEN 100
           HECGQKCSQLHHGGTSKCISTDPTFTKYACYCFYNCPEN
Sbjct: 61  HECGQKCSQLHHGGTSKCISTDPTFTKYACYCFYNCPEN 99

[Close]
BLAST of Csa4G507400 vs. NCBI nr
Match: gi|700209891|gb|KGN64987.1| (hypothetical protein Csa_1G172580 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 4.7e-16
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 1 

Query: 18 MANLSSFRVAIIIVIFAVSMILVPQGTSALKCQDRLYVGGCIQHECGQKCSQLHHGGTSK 77
          M  L S  +  I++I AV+MI +PQG  A +CQD LY  GC   +CGQKC + HH  + +
Sbjct: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60

Query: 78 CISTDPTFTKYACYCFYNC 97
          CI TDP  T YACYCFY C
Sbjct: 61 CIPTDPDQTIYACYCFYTC 79

[Close]
BLAST of Csa4G507400 vs. NCBI nr
Match: gi|700199739|gb|KGN54897.1| (hypothetical protein Csa_4G576870 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 7.0e-12
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 1 

Query: 21 LSSFRVAIIIVIFAVSMILVPQGTSAL-KCQDRLYVGGCIQHECGQKCSQLHHGGTSKCI 80
          + S R+    +IFAV+++L  Q  SA  +CQD LY  GC  ++CG+KC + HH  + +CI
Sbjct: 1  MDSSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCI 60

Query: 81 STDPTFTKYACYCFYNC 97
           T+P+ T YACYCF++C
Sbjct: 61 PTNPSQTIYACYCFFDC 77

[Close]
BLAST of Csa4G507400 vs. NCBI nr
Match: gi|700197262|gb|KGN52439.1| (hypothetical protein Csa_5G634350 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-07
Identity = 25/58 (43.10%), Postives = 38/58 (65.52%), Query Frame = 1 

Query: 39 LVPQGTSALKCQDRLYVGGCIQHECGQKCSQLHHGGTSKCISTDPTFTKYACYCFYNC 97
          ++P G SA KC+ +LY  GC+  +C QKCS  +   +S+C++  P    Y+CYCFY+C
Sbjct: 21 IMPNGVSATKCETKLY-DGCLPKDCTQKCSDKYPNSSSECVAVPPIPFHYSCYCFYDC 77

[Close]
BLAST of Csa4G507400 vs. NCBI nr
Match: gi|700197261|gb|KGN52438.1| (hypothetical protein Csa_5G634340 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 3.1e-07
Identity = 29/80 (36.25%), Postives = 49/80 (61.25%), Query Frame = 1 

Query: 18 MANLSSFRVAIIIVIFAVSMILVPQGTSALKCQDRLYVGGCIQHECGQKCSQLH-HGGTS 77
          M+ +SS +  I+ ++ +V+ + +P+  +A  C D+LY  GC+  EC Q+CS  + +  +S
Sbjct: 1  MSRISSSQFFIVFLLLSVAWMGMPKVANAKVCADKLYDVGCVADECKQRCSAKYPNDSSS 60

Query: 78 KCISTDPTFTKYACYCFYNC 97
          +C+S  P     AC CFYNC
Sbjct: 61 QCLSLPPIPFHNACLCFYNC 80

The following BLAST results are available for this feature:
BLAST of Csa4G507400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYP7_CUCSA1.7e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G507400 PE=4 SV=1[more]
A0A0A0LVZ5_CUCSA3.3e-1651.90Uncharacterized protein OS=Cucumis sativus GN=Csa_1G172580 PE=4 SV=1[more]
A0A0A0L2R3_CUCSA4.9e-1245.45Uncharacterized protein OS=Cucumis sativus GN=Csa_4G576870 PE=4 SV=1[more]
A0A0A0KU45_CUCSA7.3e-0843.10Uncharacterized protein OS=Cucumis sativus GN=Csa_5G634350 PE=4 SV=1[more]
A0A0A0KS76_CUCSA2.1e-0736.25Uncharacterized protein OS=Cucumis sativus GN=Csa_5G634340 PE=4 SV=1[more]
BLAST of Csa4G507400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199652|gb|KGN54810.1|2.4e-52100.00hypothetical protein Csa_4G507400 [Cucumis sativus][more]
gi|700209891|gb|KGN64987.1|4.7e-1651.90hypothetical protein Csa_1G172580 [Cucumis sativus][more]
gi|700199739|gb|KGN54897.1|7.0e-1245.45hypothetical protein Csa_4G576870 [Cucumis sativus][more]
gi|700197262|gb|KGN52439.1|1.1e-0743.10hypothetical protein Csa_5G634350 [Cucumis sativus][more]
gi|700197261|gb|KGN52438.1|3.1e-0736.25hypothetical protein Csa_5G634340 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010851SLR1_pollen-bd
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G507400.1Csa4G507400.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010851S locus-related glycoprotein 1 binding pollen coat proteinPFAMPF07333SLR1-BPcoord: 42..96
score: 3.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G507400CSPI04G20260Wild cucumber (PI 183967)cpicuB187
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G507400Watermelon (97103) v2cuwmbB293
Csa4G507400Wax gourdcuwgoB409
Csa4G507400Cucumber (Gy14) v1cgycuB381
Csa4G507400Cucurbita maxima (Rimu)cmacuB672
Csa4G507400Cucurbita maxima (Rimu)cmacuB861
Csa4G507400Cucurbita moschata (Rifu)cmocuB663
Csa4G507400Cucurbita moschata (Rifu)cmocuB849
Csa4G507400Melon (DHL92) v3.5.1cumeB326
Csa4G507400Watermelon (Charleston Gray)cuwcgB296
Csa4G507400Watermelon (97103) v1cuwmB333
Csa4G507400Cucurbita pepo (Zucchini)cpecuB082
Csa4G507400Cucurbita pepo (Zucchini)cpecuB498
Csa4G507400Bottle gourd (USVL1VR-Ls)culsiB261
Csa4G507400Cucumber (Gy14) v2cgybcuB173
Csa4G507400Melon (DHL92) v3.6.1cumedB312
Csa4G507400Silver-seed gourdcarcuB0309