Csa4G499290 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G499290
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 17401701 .. 17401970 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGTCGTCGAAAATGCAAACAACATCGCGAAAAGCTACTATGACGCCGCTTGCTGCCACGCAATAAAATATTTCCTCCGCGCGCGGTCCCAATACGTCGAGGACAGCTTTTGCGGCGCCGATGTCGCAAAAGGTTCTTGTGACGCAGATGTCGCGGAAGGCTTTGGCGGCGCAGACATCATGGAAGGCTTATGCGACGCAGACGTCACAGTAGACTTTTGCGATGTAGACGTTGCAGAAAGCTTTTACGACGCTGGCGTCACATAA

mRNA sequence

ATGAACGTCGTCGAAAATGCAAACAACATCGCGAAAAGCTACTATGACGCCGCTTGCTGCCACGCAATAAAATATTTCCTCCGCGCGCGGTCCCAATACGTCGAGGACAGCTTTTGCGGCGCCGATGTCGCAAAAGGTTCTTGTGACGCAGATGTCGCGGAAGGCTTTGGCGGCGCAGACATCATGGAAGGCTTATGCGACGCAGACGTCACAGTAGACTTTTGCGATGTAGACGTTGCAGAAAGCTTTTACGACGCTGGCGTCACATAA

Coding sequence (CDS)

ATGAACGTCGTCGAAAATGCAAACAACATCGCGAAAAGCTACTATGACGCCGCTTGCTGCCACGCAATAAAATATTTCCTCCGCGCGCGGTCCCAATACGTCGAGGACAGCTTTTGCGGCGCCGATGTCGCAAAAGGTTCTTGTGACGCAGATGTCGCGGAAGGCTTTGGCGGCGCAGACATCATGGAAGGCTTATGCGACGCAGACGTCACAGTAGACTTTTGCGATGTAGACGTTGCAGAAAGCTTTTACGACGCTGGCGTCACATAA

Protein sequence

MNVVENANNIAKSYYDAACCHAIKYFLRARSQYVEDSFCGADVAKGSCDADVAEGFGGADIMEGLCDADVTVDFCDVDVAESFYDAGVT*

Homology

[Close]

BLAST of Csa4G499290 vs. TrEMBL
Match: A0A0A0L3S9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G499290 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 5.2e-45
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MNVVENANNIAKSYYDAACCHAIKYFLRARSQYVEDSFCGADVAKGSCDADVAEGFGGAD 60
          MNVVENANNIAKSYYDAACCHAIKYFLRARSQYVEDSFCGADVAKGSCDADVAEGFGGAD
Sbjct: 1  MNVVENANNIAKSYYDAACCHAIKYFLRARSQYVEDSFCGADVAKGSCDADVAEGFGGAD 60

Query: 61 IMEGLCDADVTVDFCDVDVAESFYDAGVT 90
          IMEGLCDADVTVDFCDVDVAESFYDAGVT
Sbjct: 61 IMEGLCDADVTVDFCDVDVAESFYDAGVT 89

[Close]

BLAST of Csa4G499290 vs. TrEMBL
Match: A0A0A0K568_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G162530 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.3e-07
Identity = 33/64 (51.56%), Postives = 37/64 (57.81%), Query Frame = 1


Query: 25 YFLRARSQYVEDSFCGADVAKGSCDADVAEGFGGADIMEGLCDADVTVDFCDVDVAESFY 84
          YF   RS      F   DV +   DADV EGF G ++  GLCD  V V FC  +VAESFY
Sbjct: 24 YFSGRRSLPRRKIFPPTDVMERFDDADVKEGFNGTNVAVGLCDVGVAVGFCGANVAESFY 83

Query: 85 DAGV 89
          DAGV
Sbjct: 84 DAGV 87

[Close]

BLAST of Csa4G499290 vs. NCBI nr
Match: gi|700199633|gb|KGN54791.1| (hypothetical protein Csa_4G499290 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 7.4e-45
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MNVVENANNIAKSYYDAACCHAIKYFLRARSQYVEDSFCGADVAKGSCDADVAEGFGGAD 60
          MNVVENANNIAKSYYDAACCHAIKYFLRARSQYVEDSFCGADVAKGSCDADVAEGFGGAD
Sbjct: 1  MNVVENANNIAKSYYDAACCHAIKYFLRARSQYVEDSFCGADVAKGSCDADVAEGFGGAD 60

Query: 61 IMEGLCDADVTVDFCDVDVAESFYDAGVT 90
          IMEGLCDADVTVDFCDVDVAESFYDAGVT
Sbjct: 61 IMEGLCDADVTVDFCDVDVAESFYDAGVT 89

[Close]

BLAST of Csa4G499290 vs. NCBI nr
Match: gi|700188836|gb|KGN44069.1| (hypothetical protein Csa_7G162530 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 6.1e-07
Identity = 33/64 (51.56%), Postives = 37/64 (57.81%), Query Frame = 1


Query: 25 YFLRARSQYVEDSFCGADVAKGSCDADVAEGFGGADIMEGLCDADVTVDFCDVDVAESFY 84
          YF   RS      F   DV +   DADV EGF G ++  GLCD  V V FC  +VAESFY
Sbjct: 24 YFSGRRSLPRRKIFPPTDVMERFDDADVKEGFNGTNVAVGLCDVGVAVGFCGANVAESFY 83

Query: 85 DAGV 89
          DAGV
Sbjct: 84 DAGV 87

The following BLAST results are available for this feature:

BLAST of Csa4G499290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3S9_CUCSA	5.2e-45	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G499290 PE=4 SV=1	[more]
A0A0A0K568_CUCSA	4.3e-07	51.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G162530 PE=4 SV=1	[more]

BLAST of Csa4G499290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199633\|gb\|KGN54791.1\|	7.4e-45	100.00	hypothetical protein Csa_4G499290 [Cucumis sativus]	[more]
gi\|700188836\|gb\|KGN44069.1\|	6.1e-07	51.56	hypothetical protein Csa_7G162530 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G499290.1	Csa4G499290.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G499290	Watermelon (97103) v2	cuwmbB303
Csa4G499290	Watermelon (97103) v2	cuwmbB293
Csa4G499290	Wax gourd	cuwgoB398
Csa4G499290	Wax gourd	cuwgoB409
Csa4G499290	Cucumber (Gy14) v1	cgycuB499
Csa4G499290	Cucurbita maxima (Rimu)	cmacuB665
Csa4G499290	Melon (DHL92) v3.5.1	cumeB326
Csa4G499290	Watermelon (Charleston Gray)	cuwcgB296
Csa4G499290	Watermelon (Charleston Gray)	cuwcgB306
Csa4G499290	Watermelon (97103) v1	cuwmB333
Csa4G499290	Cucurbita pepo (Zucchini)	cpecuB073
Csa4G499290	Bottle gourd (USVL1VR-Ls)	culsiB250
Csa4G499290	Cucumber (Gy14) v2	cgybcuB173
Csa4G499290	Melon (DHL92) v3.6.1	cumedB312