Csa4G499280 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G499280
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 17400476 .. 17400805 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTAAGGTGTTTTCCTTTCCTTTTCATATACTTGTTCCTCTTCATCATGTCATCTTCTACTATCCTCATCATGGCAACTTCAAGAAACCTTCTCCCTTTACCACCCACAACATTGACTAATAATGCATTACCATTCACTCAACAATCATCTCGATACCTTGTTGCGACCACAACGTCGACAATGACTCATTCAACCCTTAAAATGCCCAAGGAAAACCAGGAACAAACGTCGACAATGACTCATTCAACCCTTCAAAGTTGCATGCCAAAAGGACCTATCACATGGTCTTCTCCTAGTCCAAAACGTAATGGTGTGCAGTGCTAA

mRNA sequence

ATGGCTTTAAGGTGTTTTCCTTTCCTTTTCATATACTTGTTCCTCTTCATCATGTCATCTTCTACTATCCTCATCATGGCAACTTCAAGAAACCTTCTCCCTTTACCACCCACAACATTGACTAATAATGCATTACCATTCACTCAACAATCATCTCGATACCTTGTTGCGACCACAACGTCGACAATGACTCATTCAACCCTTAAAATGCCCAAGGAAAACCAGGAACAAACGTCGACAATGACTCATTCAACCCTTCAAAGTTGCATGCCAAAAGGACCTATCACATGGTCTTCTCCTAGTCCAAAACGTAATGGTGTGCAGTGCTAA

Coding sequence (CDS)

ATGGCTTTAAGGTGTTTTCCTTTCCTTTTCATATACTTGTTCCTCTTCATCATGTCATCTTCTACTATCCTCATCATGGCAACTTCAAGAAACCTTCTCCCTTTACCACCCACAACATTGACTAATAATGCATTACCATTCACTCAACAATCATCTCGATACCTTGTTGCGACCACAACGTCGACAATGACTCATTCAACCCTTAAAATGCCCAAGGAAAACCAGGAACAAACGTCGACAATGACTCATTCAACCCTTCAAAGTTGCATGCCAAAAGGACCTATCACATGGTCTTCTCCTAGTCCAAAACGTAATGGTGTGCAGTGCTAA

Protein sequence

MALRCFPFLFIYLFLFIMSSSTILIMATSRNLLPLPPTTLTNNALPFTQQSSRYLVATTTSTMTHSTLKMPKENQEQTSTMTHSTLQSCMPKGPITWSSPSPKRNGVQC*

Homology

[Close]

BLAST of Csa4G499280 vs. TrEMBL
Match: A0A0A0KYN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G499280 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.4e-55
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 1   MALRCFPFLFIYLFLFIMSSSTILIMATSRNLLPLPPTTLTNNALPFTQQSSRYLVATTT 60
           MALRCFPFLFIYLFLFIMSSSTILIMATSRNLLPLPPTTLTNNALPFTQQSSRYLVATTT
Sbjct: 1   MALRCFPFLFIYLFLFIMSSSTILIMATSRNLLPLPPTTLTNNALPFTQQSSRYLVATTT 60

Query: 61  STMTHSTLKMPKENQEQTSTMTHSTLQSCMPKGPITWSSPSPKRNGVQC 110
           STMTHSTLKMPKENQEQTSTMTHSTLQSCMPKGPITWSSPSPKRNGVQC
Sbjct: 61  STMTHSTLKMPKENQEQTSTMTHSTLQSCMPKGPITWSSPSPKRNGVQC 109

[Close]

BLAST of Csa4G499280 vs. TrEMBL
Match: A0A0A0L2F6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G499295 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.6e-32
Identity = 78/111 (70.27%), Postives = 86/111 (77.48%), Query Frame = 1


Query: 1   MALRCFPFLFIYL-FLFIMSSSTILIMATSRNLLPLPPTTLTNNALPFTQQSSRYLVATT 60
           M  RCFPFLFIYL FLFIMSS T L MATSRN+LPL PTTLTN+AL F Q+SSR+L  TT
Sbjct: 1   MTPRCFPFLFIYLFFLFIMSSPTTL-MATSRNILPLEPTTLTNDALSFVQRSSRHLATTT 60

Query: 61  TSTMTHS-TLKMPKENQEQTSTMTHSTLQSCMPKGPITWSSPSPKRNGVQC 110
           T T   S +LK+ K   EQTST THSTLQSC PKGPI WSSPSP RN ++C
Sbjct: 61  TPTSRRSNSLKLSKGRHEQTSTKTHSTLQSCKPKGPIRWSSPSPLRNNLKC 110

[Close]

BLAST of Csa4G499280 vs. NCBI nr
Match: gi|700199632|gb|KGN54790.1| (hypothetical protein Csa_4G499280 [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 1.9e-55
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 1   MALRCFPFLFIYLFLFIMSSSTILIMATSRNLLPLPPTTLTNNALPFTQQSSRYLVATTT 60
           MALRCFPFLFIYLFLFIMSSSTILIMATSRNLLPLPPTTLTNNALPFTQQSSRYLVATTT
Sbjct: 1   MALRCFPFLFIYLFLFIMSSSTILIMATSRNLLPLPPTTLTNNALPFTQQSSRYLVATTT 60

Query: 61  STMTHSTLKMPKENQEQTSTMTHSTLQSCMPKGPITWSSPSPKRNGVQC 110
           STMTHSTLKMPKENQEQTSTMTHSTLQSCMPKGPITWSSPSPKRNGVQC
Sbjct: 61  STMTHSTLKMPKENQEQTSTMTHSTLQSCMPKGPITWSSPSPKRNGVQC 109

[Close]

BLAST of Csa4G499280 vs. NCBI nr
Match: gi|700199634|gb|KGN54792.1| (hypothetical protein Csa_4G499295 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 5.2e-32
Identity = 78/111 (70.27%), Postives = 86/111 (77.48%), Query Frame = 1


Query: 1   MALRCFPFLFIYL-FLFIMSSSTILIMATSRNLLPLPPTTLTNNALPFTQQSSRYLVATT 60
           M  RCFPFLFIYL FLFIMSS T L MATSRN+LPL PTTLTN+AL F Q+SSR+L  TT
Sbjct: 1   MTPRCFPFLFIYLFFLFIMSSPTTL-MATSRNILPLEPTTLTNDALSFVQRSSRHLATTT 60

Query: 61  TSTMTHS-TLKMPKENQEQTSTMTHSTLQSCMPKGPITWSSPSPKRNGVQC 110
           T T   S +LK+ K   EQTST THSTLQSC PKGPI WSSPSP RN ++C
Sbjct: 61  TPTSRRSNSLKLSKGRHEQTSTKTHSTLQSCKPKGPIRWSSPSPLRNNLKC 110

The following BLAST results are available for this feature:

BLAST of Csa4G499280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYN0_CUCSA	1.4e-55	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G499280 PE=4 SV=1	[more]
A0A0A0L2F6_CUCSA	3.6e-32	70.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G499295 PE=4 SV=1	[more]

BLAST of Csa4G499280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199632\|gb\|KGN54790.1\|	1.9e-55	100.00	hypothetical protein Csa_4G499280 [Cucumis sativus]	[more]
gi\|700199634\|gb\|KGN54792.1\|	5.2e-32	70.27	hypothetical protein Csa_4G499295 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G499280.1	Csa4G499280.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G499280	ClCG04G002050	Watermelon (Charleston Gray)	cuwcgB296
Csa4G499280	Bhi03G002347	Wax gourd	cuwgoB409
Csa4G499280	CSPI04G20480	Wild cucumber (PI 183967)	cpicuB187

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G499280	Wax gourd	cuwgoB398
Csa4G499280	Cucumber (Gy14) v1	cgycuB499
Csa4G499280	Cucurbita maxima (Rimu)	cmacuB665
Csa4G499280	Melon (DHL92) v3.5.1	cumeB326
Csa4G499280	Watermelon (Charleston Gray)	cuwcgB306
Csa4G499280	Watermelon (97103) v1	cuwmB333
Csa4G499280	Cucurbita pepo (Zucchini)	cpecuB073
Csa4G499280	Bottle gourd (USVL1VR-Ls)	culsiB250
Csa4G499280	Cucumber (Gy14) v2	cgybcuB173
Csa4G499280	Melon (DHL92) v3.6.1	cumedB312
Csa4G499280	Watermelon (97103) v2	cuwmbB303
Csa4G499280	Watermelon (97103) v2	cuwmbB293