Csa4G492210 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G492210
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Appr-1-p processing enzyme family protein
Location	Chr4 : 17124233 .. 17124700 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATTCGGACTTCCATCAGCAACCATTTGACCCGCTGCCACGATTTGATGACAATCACAAGCACTGCTTGGCATAACAGTTCAGCAGTGGCAATCTCCATTCTCCGCCGGGTTTCTCTATTGCATTTCCAATCCTTCACCGTCTCCTCAAGTCCCTCCTTTGCACCTCACTTCCCACCATCAACACCCAGAACCTTTGCCGTTTCAATGGCCAAGCCATCGGGCAGTGGAGTGGTTCGCTTCAAAGTCTCTCCCTCAACCGCTTGCGTTATTCAGAAGGGTGACATCACAAAGTGGTTCATCGACGGTTCTTCTGACGCCATTGTCCGTAACTCTATCTTTCTCCTCTACTCGGACTAGGCTATTTTATTAAAGGCCTTATTCGCTTCCTTATTTGTTTACTGCTAAAGCAAAGGCTGGTGAGATGTAATCAGTTGAAATCTCCTGTGTCTTTGAGTAATGATCAGA

mRNA sequence

ATGACAATCACAAGCACTGCTTGGCATAACAGTTCAGCAGTGGCAATCTCCATTCTCCGCCGGGTTTCTCTATTGCATTTCCAATCCTTCACCGTCTCCTCAAGTCCCTCCTTTGCACCTCACTTCCCACCATCAACACCCAGAACCTTTGCCGTTTCAATGGCCAAGCCATCGGGCAGTGGAGTGGTTCGCTTCAAAGTCTCTCCCTCAACCGCTTGCGTTATTCAGAAGGGTGACATCACAAAGTGGTTCATCGACGGTTCTTCTGACGCCATTGTCCGTAACTCTATCTTTCTCCTCTACTCGGACTAG

Coding sequence (CDS)

ATGACAATCACAAGCACTGCTTGGCATAACAGTTCAGCAGTGGCAATCTCCATTCTCCGCCGGGTTTCTCTATTGCATTTCCAATCCTTCACCGTCTCCTCAAGTCCCTCCTTTGCACCTCACTTCCCACCATCAACACCCAGAACCTTTGCCGTTTCAATGGCCAAGCCATCGGGCAGTGGAGTGGTTCGCTTCAAAGTCTCTCCCTCAACCGCTTGCGTTATTCAGAAGGGTGACATCACAAAGTGGTTCATCGACGGTTCTTCTGACGCCATTGTCCGTAACTCTATCTTTCTCCTCTACTCGGACTAG

Protein sequence

MTITSTAWHNSSAVAISILRRVSLLHFQSFTVSSSPSFAPHFPPSTPRTFAVSMAKPSGSGVVRFKVSPSTACVIQKGDITKWFIDGSSDAIVRNSIFLLYSD*

Homology

[Close]

BLAST of Csa4G492210 vs. TrEMBL
Match: A0A0A0L3R2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G492210 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.6e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MTITSTAWHNSSAVAISILRRVSLLHFQSFTVSSSPSFAPHFPPSTPRTFAVSMAKPSGS 60
           MTITSTAWHNSSAVAISILRRVSLLHFQSFTVSSSPSFAPHFPPSTPRTFAVSMAKPSGS
Sbjct: 1   MTITSTAWHNSSAVAISILRRVSLLHFQSFTVSSSPSFAPHFPPSTPRTFAVSMAKPSGS 60

Query: 61  GVVRFKVSPSTACVIQKGDITKWFIDGSSDAIVRNSIFLLYSD 104
           GVVRFKVSPSTACVIQKGDITKWFIDGSSDAIVRNSIFLLYSD
Sbjct: 61  GVVRFKVSPSTACVIQKGDITKWFIDGSSDAIVRNSIFLLYSD 103

[Close]

BLAST of Csa4G492210 vs. TrEMBL
Match: E5GB75_CUCME (Appr-1-p processing enzyme family protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-23
Identity = 60/82 (73.17%), Postives = 66/82 (80.49%), Query Frame = 1


Query: 1  MTITSTAWHNSSAVAISILRRVSLLHFQSFTVSSSPSFAPHFPPSTPRTFAVSMAKPSGS 60
          MTI  TAW NS +V IS+LRRVS LHFQSFT+SS+ SF+PHFP STPRTFAVSMA  S S
Sbjct: 1  MTIAGTAWQNSVSVGISLLRRVSPLHFQSFTLSSNLSFSPHFPRSTPRTFAVSMANESRS 60

Query: 61 GVVRFKVSPSTACVIQKGDITK 83
          GVV FKVSPST CVIQK  + K
Sbjct: 61 GVVGFKVSPSTDCVIQKEGVEK 82

[Close]

BLAST of Csa4G492210 vs. TrEMBL
Match: A0A0A0KSJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G221930 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1


Query: 54 MAKPSGSGVVRFKVSPSTACVIQKGDITKWFIDGSSDAIV 94
          MAKPSGSGVVRFKVSPSTACVIQKGDITKWFIDGSSDAIV
Sbjct: 1  MAKPSGSGVVRFKVSPSTACVIQKGDITKWFIDGSSDAIV 40

[Close]

BLAST of Csa4G492210 vs. TrEMBL
Match: V7CVU4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G074800g PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.5e-06
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 1


Query: 51 AVSMAKPSGSGVVRFKVSPSTACVIQKGDITKWFIDGSSDAIV 94
          AV+     G GVVRF +S S+A VIQKGDITKW IDGS+DAIV
Sbjct: 5  AVARVSNGGGGVVRFPLSASSALVIQKGDITKWSIDGSTDAIV 47

[Close]

BLAST of Csa4G492210 vs. TAIR10
Match: AT2G40600.1 (AT2G40600.1 appr-1-p processing enzyme family protein)

HSP 1 Score: 47.8 bits (112), Expect = 4.9e-06
Identity = 31/85 (36.47%), Postives = 39/85 (45.88%), Query Frame = 1


Query: 9   HNSSAVAISILRRVSLLHFQSFTVSSSPSFAPHFPPSTPRTFAVSMAKPSGSGVVRFKVS 68
           H+SS +        S     SF V++  + A      + R   VS +  SG     F +S
Sbjct: 18  HSSSTILRPTSSSSSRASLISFAVNNFHTIASSSSTLSSRLTTVSSSMASGDEGAVFNLS 77

Query: 69  PSTACVIQKGDITKWFIDGSSDAIV 94
            S+   I KGDITKW +D SSDAIV
Sbjct: 78  DSSLLKILKGDITKWSVDSSSDAIV 102

[Close]

BLAST of Csa4G492210 vs. NCBI nr
Match: gi|700199618|gb|KGN54776.1| (hypothetical protein Csa_4G492210 [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 2.3e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MTITSTAWHNSSAVAISILRRVSLLHFQSFTVSSSPSFAPHFPPSTPRTFAVSMAKPSGS 60
           MTITSTAWHNSSAVAISILRRVSLLHFQSFTVSSSPSFAPHFPPSTPRTFAVSMAKPSGS
Sbjct: 1   MTITSTAWHNSSAVAISILRRVSLLHFQSFTVSSSPSFAPHFPPSTPRTFAVSMAKPSGS 60

Query: 61  GVVRFKVSPSTACVIQKGDITKWFIDGSSDAIVRNSIFLLYSD 104
           GVVRFKVSPSTACVIQKGDITKWFIDGSSDAIVRNSIFLLYSD
Sbjct: 61  GVVRFKVSPSTACVIQKGDITKWFIDGSSDAIVRNSIFLLYSD 103

[Close]

BLAST of Csa4G492210 vs. NCBI nr
Match: gi|778701529|ref|XP_011655041.1| (PREDICTED: O-acetyl-ADP-ribose deacetylase MACROD1 isoform X2 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 1.5e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 1  MTITSTAWHNSSAVAISILRRVSLLHFQSFTVSSSPSFAPHFPPSTPRTFAVSMAKPSGS 60
          MTITSTAWHNSSAVAISILRRVSLLHFQSFTVSSSPSFAPHFPPSTPRTFAVSMAKPSGS
Sbjct: 1  MTITSTAWHNSSAVAISILRRVSLLHFQSFTVSSSPSFAPHFPPSTPRTFAVSMAKPSGS 60

Query: 61 GVVRFKVSPSTACVIQKGDITKWFIDGSSDAIV 94
          GVVRFKVSPSTACVIQKGDITKWFIDGSSDAIV
Sbjct: 61 GVVRFKVSPSTACVIQKGDITKWFIDGSSDAIV 93

[Close]

BLAST of Csa4G492210 vs. NCBI nr
Match: gi|449457407|ref|XP_004146440.1| (PREDICTED: O-acetyl-ADP-ribose deacetylase MACROD2 isoform X1 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 1.5e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 1  MTITSTAWHNSSAVAISILRRVSLLHFQSFTVSSSPSFAPHFPPSTPRTFAVSMAKPSGS 60
          MTITSTAWHNSSAVAISILRRVSLLHFQSFTVSSSPSFAPHFPPSTPRTFAVSMAKPSGS
Sbjct: 1  MTITSTAWHNSSAVAISILRRVSLLHFQSFTVSSSPSFAPHFPPSTPRTFAVSMAKPSGS 60

Query: 61 GVVRFKVSPSTACVIQKGDITKWFIDGSSDAIV 94
          GVVRFKVSPSTACVIQKGDITKWFIDGSSDAIV
Sbjct: 61 GVVRFKVSPSTACVIQKGDITKWFIDGSSDAIV 93

[Close]

BLAST of Csa4G492210 vs. NCBI nr
Match: gi|778697762|ref|XP_011654393.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g23020-like [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 4.2e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MTITSTAWHNSSAVAISILRRVSLLHFQSFTVSSSPSFAPHFPPSTPRTFAVSMAKPSGS 60
          MTITSTAWHNSSAVAISILRRVSLLHFQSFTVSSSPSFAPHFPPSTPRTFAVSMAKPSGS
Sbjct: 1  MTITSTAWHNSSAVAISILRRVSLLHFQSFTVSSSPSFAPHFPPSTPRTFAVSMAKPSGS 60

Query: 61 GVVRFKVSPSTACVIQKGDITKWFIDGSSDAI 93
          GVVRFKVSPSTACVIQKGDITKWFIDGSSDAI
Sbjct: 61 GVVRFKVSPSTACVIQKGDITKWFIDGSSDAI 92

[Close]

BLAST of Csa4G492210 vs. NCBI nr
Match: gi|659114194|ref|XP_008456945.1| (PREDICTED: O-acetyl-ADP-ribose deacetylase MACROD1 isoform X2 [Cucumis melo])

HSP 1 Score: 148.3 bits (373), Expect = 7.5e-33
Identity = 75/93 (80.65%), Postives = 80/93 (86.02%), Query Frame = 1


Query: 1  MTITSTAWHNSSAVAISILRRVSLLHFQSFTVSSSPSFAPHFPPSTPRTFAVSMAKPSGS 60
          MTI  TAW NS +V IS+LRRVS LHFQSFT+SS+ SF+PHFP STPRTFAVSMA  S S
Sbjct: 1  MTIAGTAWQNSVSVGISLLRRVSPLHFQSFTLSSNLSFSPHFPRSTPRTFAVSMANESRS 60

Query: 61 GVVRFKVSPSTACVIQKGDITKWFIDGSSDAIV 94
          GVV FKVSPST CVIQKGDITKWFIDGSSDAIV
Sbjct: 61 GVVGFKVSPSTDCVIQKGDITKWFIDGSSDAIV 93

The following BLAST results are available for this feature:

BLAST of Csa4G492210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3R2_CUCSA	1.6e-50	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G492210 PE=4 SV=1	[more]
E5GB75_CUCME	1.3e-23	73.17	Appr-1-p processing enzyme family protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KSJ5_CUCSA	1.6e-13	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G221930 PE=4 SV=1	[more]
V7CVU4_PHAVU	5.5e-06	67.44	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G074800g PE=4 SV=1	[more]

BLAST of Csa4G492210 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G40600.1	4.9e-06	36.47	appr-1-p processing enzyme family protein	[more]

BLAST of Csa4G492210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199618\|gb\|KGN54776.1\|	2.3e-50	100.00	hypothetical protein Csa_4G492210 [Cucumis sativus]	[more]
gi\|778701529\|ref\|XP_011655041.1\|	1.5e-44	100.00	PREDICTED: O-acetyl-ADP-ribose deacetylase MACROD1 isoform X2 [Cucumis sativus]	[more]
gi\|449457407\|ref\|XP_004146440.1\|	1.5e-44	100.00	PREDICTED: O-acetyl-ADP-ribose deacetylase MACROD2 isoform X1 [Cucumis sativus]	[more]
gi\|778697762\|ref\|XP_011654393.1\|	4.2e-44	100.00	PREDICTED: pentatricopeptide repeat-containing protein At3g23020-like [Cucumis s...	[more]
gi\|659114194\|ref\|XP_008456945.1\|	7.5e-33	80.65	PREDICTED: O-acetyl-ADP-ribose deacetylase MACROD1 isoform X2 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU118931	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G492210.1	Csa4G492210.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU118931	CU118931	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G492210	Cucumber (Gy14) v1	cgycuB390
Csa4G492210	Cucurbita maxima (Rimu)	cmacuB665
Csa4G492210	Cucurbita maxima (Rimu)	cmacuB862
Csa4G492210	Cucurbita moschata (Rifu)	cmocuB850
Csa4G492210	Melon (DHL92) v3.5.1	cumeB326
Csa4G492210	Watermelon (Charleston Gray)	cuwcgB296
Csa4G492210	Watermelon (Charleston Gray)	cuwcgB306
Csa4G492210	Watermelon (97103) v1	cuwmB333
Csa4G492210	Cucurbita pepo (Zucchini)	cpecuB073
Csa4G492210	Cucurbita pepo (Zucchini)	cpecuB499
Csa4G492210	Bottle gourd (USVL1VR-Ls)	culsiB250
Csa4G492210	Bottle gourd (USVL1VR-Ls)	culsiB251
Csa4G492210	Cucumber (Gy14) v2	cgybcuB173
Csa4G492210	Melon (DHL92) v3.6.1	cumedB312
Csa4G492210	Silver-seed gourd	carcuB0311
Csa4G492210	Silver-seed gourd	carcuB0545
Csa4G492210	Watermelon (97103) v2	cuwmbB303
Csa4G492210	Watermelon (97103) v2	cuwmbB293
Csa4G492210	Wax gourd	cuwgoB394
Csa4G492210	Wax gourd	cuwgoB398