Csa4G486190 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G486190
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionU6 snRNA-associated Sm-like protein LSm4; contains IPR010920 (Like-Sm (LSM) domain), IPR027141 (U6 snRNA-associated Sm-like protein LSm4/Small nuclear ribonucleoprotein Sm D1/D3)
LocationChr4 : 17079765 .. 17084562 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAATTTGTGATTTATATGGAGGTGGAGACATTATGGTCATTTCTCTTTCTCATTCTTAGTATTATTAGAAAAAAAGAAGCAAAGAAATGAGAGTCTTCTTTTTCTCCTCTTCCTCCGCGCATCAGCCCTTGCCCTTCATCTTTCAATCTTTCCGTCCGCCCTAGGACCAGCCACCGACGACTCCCTCCTCTCTTCGTCATCTCTCCCTATCTCTCCGTCACTCTCCTCCGCTCACCGTCTCCCTATCTCCTCCAGCCGACGCCATCACCTGCCGATCGCCATTTGCGCCGCTCGACTCATCGGACGACAACCATCTCGTCGCGCTGCGCCACCCTCTGCCACCGCTTGCCTCGCCAAATCTGAAAGTTGAGGTTAGTTTTGGGCTGTTCGGTGAGTTTCGTGGGGTTTTTCTTGAAGATCTATACTACCCATTAGCCTTTAGCTTCAAATGACTAGTTCCTATCACAGTAGCGGTGCCGTTTAGTTGCTGTCCATCCGGTTCATTCAGGTTTTTGTCAACATTTTGGTAATTAGCAAAGGTGAGAAATATTAAGATGTCATAGAGTTTTGGGTAATGATTTGCTTATCTTAGTTGGATTTCTTGGAGTGTTTCGACTGCCCATTTAGTTTCGACTTTGATTTTGTAATACCCATTACATTTCATTGTCTAGCCTTTAGAGGCCCTGAATTGGCCATTTTCACACAATTTGGATAATATTCTAAGCTTCAAAGTGGATTTTGAGTACCCATCTAACTTTAGTGATAACATTGGGTAATCCACAGTGGTGGATGCTTGATTTCGAATTTAGAAGTTAGGTAAGAGTACCTTGCTATGTTTTTGGTAGGGTTTGGAGTAACTTTATTGGGTTTTTCTAAAGTTCTTGAATACTCTAATATTGAATAGTCCATGATGTTGAAAGCTACATTTCGAAGTTAGAAGATCGTTAGGGTGCTCTCCATTAGAATTAAGGCTACTTTGATAAGTGTTTAGTAAGATTTGGGTCATTTTAGTAAGTTTTGTGAATACCCATTTAGTTTCGACATGAAATTTCCGTTACCATATTGTTTGAATGGAAGATTGGAGACTTTAGAGAACTATGAAGTGTTGTTCACCTTACTTAAAGATTGTTAAGGACAAGTGTGGGAGTTATTGACTTGTTAGTTTGGCATTAAGTTTGTTGAATTGATCTAAATCTCTTAAATTGTTGATATTGAGAATAAGAGCATATTAGTATAAAAGACCCATTGAATTTATACTAAGTTTGGATGCTCATTTGGTTAAGAGTTTAATGTGAAGTTTAAGGGTGCAAAGGTGGAATTTTTAGCCTAGACTAAAGCATGTAGGTAAAAATTCAATCTAAGTCTTGGAAGAAAGAAATTGAAGTCTTCACACCTAATTAGATTTCAAAGGAACCAAATGCATAAACCAATAGGAAAACACAAATGGAGACAAACCCAGCACAAAATGGACCTCCCATGCACTCTGACGCACCGACGTTTGAGGGATGAGGCAATGTCTTCTGGCTGTGCGTGAAGCTCATGTACAGCTCTTTCCAGCGAGCGATGAACTCAGATAGGGGCGGATGGTGGGGGCGCTCCTTCTGAGGTGAGCGGTGTGGACAAACGGCCACTCGTACTTGGTGATCAAACCTAAACCCTAACGGAATGTAGCCGTTAAAGAATAAACAAATAGATGAATGTTCTAAACTTTAGATTTCTTTGATACCATGTTGTAGTTAGAGTGAAATATGAAATAATTCCCTTACTTCGTTCTATACAATATATATGGGCATTCCTAGAAACCCGAAGTAAAGACTAGTGAATTACAATAAAGGACAAAAGACTAATAAGTTCCTATAGTTACATATATATTATAATATGAGCATCTGGGAACTTACGTTCTTTAGGTTTTTTTTTCTACAGGTAGTATCTGCTTCTAGTGTCTGCTTCATATCTTTAAAGATGGTATGTTACTGAACTTGTTTTTTCATCTGTTCCTGTTTTCCTTTTGGTTCATGATTAATTTTGCTCGTGTAACTTCAGAGTGTTTATTCATTTAATGTCTCTGATAAGTTGAATTATTTCCTTCAAATGCGTGGTTGTCACCTGTTGTTTCCTCTTTTCCCTTCATGGGTGTGCTCTTTTATTGCAGCTTCCTCTTTCACTCCTAAAGACTGCTCAAGGACACCCAATGGTGAGGGCTTTCTTTCAGTTGTCTTTCTGTTAATACACAGGAGAGCTTATATGCACCTAGATATATTCAAGAGAGAGTATCACATTTGATTGCTACTTTAAAGTGTCGATTAATTTGATATCCAGATAAGTAGGATAATACGTTTCAAATTGATCCCCTGGAGCTTCTATTATGGTTATTGTTGTCATTATTATTTTGGATTATTTTTGCTTGGCTAAATCTTTAGTGCCATCACAGTGATACATGGTGGGTATATGGCTTTGCTTTGTCTTTAGCTATTCCGGCTGTTGTCAAGAACTTCTACTTTAGACTCCGTTTATGTGCTTGTTCTAAAAATGTATAATTTCTGTGTTGCAACAGTTGGTGGAATTGAAAAATGGTGAGACTTACAATGGCCATTTGGTTAATTGTGACACATGGATGAACATTCATCTTCGGGAAGTCATCTGCACTTCTAAAGTAATGCGCTTCTATTTGATGGATGTTTTTTTTTCTTTTGGGTTTTTCTTCTTTCTCTAGGAGTTTGAACTTATAATGACCATGTTTTCCAATTATCAAATATCAGGACGGTGATCGGTTTTGGCGAATGCCCGAATGTTATATCCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTATTCATGAAAACTGTTGCCTTTTCTTACTGTTTAATTGTGTGATGTTTGATGCATCAGAGTACCTTACATCTAACATGCGGTTGTTGAACAAAAAAGTCAGTTGCTTAATTTAGTTCTTTTTCCATTTCTGGCAAATCACATACTTCTCAGCCGCATCTCATTTTTATTTCTGGTTTCTAATATTATTTCCTCTCTTCTTTGACTTGTATTCATACAACTTTGTCATCATCTTTAACTTGTGAATGTGATTTTCTCGGTATCCACCAAAAAGTGATGTAATAAAACAGTTCTTTTTTTTTTTATATATATCCGTGAGTGTCTGAGCCAGCTTACGCGTATCTCGACTAATCTCACCGGACAACCCGCCTAACCCTACAACATTTGGTTGTCAAGAAAACTCGTAGGAAATTAATTCCTAGATAGGTGGCCACCATGGATTGAACACATGACTTTTTAGTTAGTTATTGAGGCTACGTTTCCCTTTTTACCACTAGGTCAACCCATGATGGTTAATGAAATCGTTAAAATTATTCTTTTTCTTTCTGGTGATTTAAGTTATATCACTCCTGTCTTGTAATTTGCCCTAACTATAGTAAATTTTCTAGTTTTTGATGAACTGTTTCAGTGTTATTATCTCTTTCATACACGCATGGACGGGAGTGTACACTTGCACTCCTGAAATGTTCTATTTCACTTATTTTGTATTGTTTTTCAGGTTATTGACAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGGTATACTGTTTATGCATTTTATATTATATAATGATTGTCAAATGAAGTAAAAAGATAAAATGTATTTTGCATTTAGGAAATTTGAAACTGTAAAACCAATTAATTCTTGAAGTTCTCCCAAAATAATAATAATAATAACTTAACTCTTAAATCTTTTCTTTTTGGAATCTTGTACAATATCCATGTTGTAAATCTGAAAAAAGATGGACATTCGACATCTCATAAAATACTAAAAAAATTTGCCAATGTTTGAATGTATTGGACTCTTGATTGTCCAGAACATCTAATGAGTCTAGATAAACTATGCTATTATAGACCAAGATTAATTTCTCCTTTGCCCTTGGTTTCTGACAAGTAAGGAAACTGATGCTTTGACACCAAATTTTCAGATAGGAAACCTCTGGGTGTAGGGCGTGGAAGAGGAAGAGGGCGCGAGGATGGTCCTGGTGTCAGACCAGCTAAAGGAATGGGGCGAGGCTTTGATGATGGTGCAAAAGCTGCTTCTGGCGGCCGTGGAAAGGGTGGCCCTGGTGGGAAACCTGGTGCCAACAGAGGTAAAACTAAACTGAATCTTTGTTATTTATGAAACTTGAATTTGCTATTTTAGCTTCCCCATTTGATGACAATTTTGCTTTTGCTTTTGCTTTGCTATGCCCCTTATCTATTCAATGTTTTCTTCGTTTAATTTTTCAACCTCTAAGAAGACTTGGGCCAAATTTTACAAACGAAATAGAGGGGTTTCATAAACTATTTCCGTATTTCAGTTTTCTAAAATTTAGCTTTGACTTGAAAGTTGACTTGGAGTAGGTTAGAAATCAATGGAAAAGGTTTAAATGGAAAAGAGTATAAACAAGAAAAATGTTTGTGAAAAAAGAAAAGAAACTATAAACAAAAACGTTTACAAGTGGACTTCTTATCTCATCTTATTAATCTTGTTTTTTCTCTTGATATAGTTGGAGGCAGGGGACGAGGTTGATCAGATTGATATCGGTAACAGATGAAATGGACTAATTACATATGCAAGCTCTGCCCAGTTTTCAAGTCGGCAGCCGTGTGTTTTCTGTTTTATGCATCTTCTTTTGGTCTGGATTCATGAGTGAATATTTGTGAGATTTTAGTGCCAGACCTCTGCGAAAGTTATAAACTAGACAAACGGTTCATTTTAATTAATGGTGTAATTGATTGCAAATTTGGTTTAT

mRNA sequence

ATGAGAATTTGTGATTTATATGGAGGTGGAGACATTATGGACCAGCCACCGACGACTCCCTCCTCTCTTCGTCATCTCTCCCTATCTCTCCGTCACTCTCCTCCGCTCACCGTCTCCCTATCTCCTCCAGCCGACGCCATCACCTGCCGATCGCCATTTGCGCCGCTCGACTCATCGGACGACAACCATCTCGTCGCGCTGCGCCACCCTCTGCCACCGCTTGCCTCGCCAAATCTGAAAGTTGAGGTAGTATCTGCTTCTAGTGTCTGCTTCATATCTTTAAAGATGCTTCCTCTTTCACTCCTAAAGACTGCTCAAGGACACCCAATGTTGGTGGAATTGAAAAATGGTGAGACTTACAATGGCCATTTGGTTAATTGTGACACATGGATGAACATTCATCTTCGGGAAGTCATCTGCACTTCTAAAGACGGTGATCGGTTTTGGCGAATGCCCGAATGTTATATCCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTTATTGACAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGATAGGAAACCTCTGGGTGTAGGGCGTGGAAGAGGAAGAGGGCGCGAGGATGGTCCTGGTGTCAGACCAGCTAAAGGAATGGGGCGAGGCTTTGATGATGGTGCAAAAGCTGCTTCTGGCGGCCGTGGAAAGGGTGGCCCTGGTGGGAAACCTGGTGCCAACAGAGTTGGAGGCAGGGGACGAGGTTGA

Coding sequence (CDS)

ATGAGAATTTGTGATTTATATGGAGGTGGAGACATTATGGACCAGCCACCGACGACTCCCTCCTCTCTTCGTCATCTCTCCCTATCTCTCCGTCACTCTCCTCCGCTCACCGTCTCCCTATCTCCTCCAGCCGACGCCATCACCTGCCGATCGCCATTTGCGCCGCTCGACTCATCGGACGACAACCATCTCGTCGCGCTGCGCCACCCTCTGCCACCGCTTGCCTCGCCAAATCTGAAAGTTGAGGTAGTATCTGCTTCTAGTGTCTGCTTCATATCTTTAAAGATGCTTCCTCTTTCACTCCTAAAGACTGCTCAAGGACACCCAATGTTGGTGGAATTGAAAAATGGTGAGACTTACAATGGCCATTTGGTTAATTGTGACACATGGATGAACATTCATCTTCGGGAAGTCATCTGCACTTCTAAAGACGGTGATCGGTTTTGGCGAATGCCCGAATGTTATATCCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTTATTGACAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGATAGGAAACCTCTGGGTGTAGGGCGTGGAAGAGGAAGAGGGCGCGAGGATGGTCCTGGTGTCAGACCAGCTAAAGGAATGGGGCGAGGCTTTGATGATGGTGCAAAAGCTGCTTCTGGCGGCCGTGGAAAGGGTGGCCCTGGTGGGAAACCTGGTGCCAACAGAGTTGGAGGCAGGGGACGAGGTTGA

Protein sequence

MRICDLYGGGDIMDQPPTTPSSLRHLSLSLRHSPPLTVSLSPPADAITCRSPFAPLDSSDDNHLVALRHPLPPLASPNLKVEVVSASSVCFISLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDDGAKAASGGRGKGGPGGKPGANRVGGRGRG*
Homology
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BLAST of Csa4G486190 vs. Swiss-Prot
Match: LSM4_TOBAC (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 8.7e-64
Identity = 122/150 (81.33%), Postives = 124/150 (82.67%), Query Frame = 1 

Query: 96  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 155
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 156 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGR-GREDGPGVRPAKGMGRGFD 215
           +RGNTIKYLRVPDEVIDKVQEE KSR DRKP GVGR R R GR+D    R  KG+GRG D
Sbjct: 61  VRGNTIKYLRVPDEVIDKVQEEAKSRTDRKPPGVGRARARGGRDDSAVGRQPKGIGRGMD 120

Query: 216 DGAKAASGGRGKGGPGGKPGANRVGGRGRG 245
           DG    + GRGKGGP  K G  R GGRGRG
Sbjct: 121 DG---GAKGRGKGGPSAKSG-GRGGGRGRG 146

[Close]
BLAST of Csa4G486190 vs. Swiss-Prot
Match: LSM4_ORYSJ (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonica GN=Os01g0256900 PE=2 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.9e-63
Identity = 122/151 (80.79%), Postives = 128/151 (84.77%), Query Frame = 1 

Query: 96  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 155
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGD+FWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY 60

Query: 156 IRGNTIKYLRVPDEVIDKVQEET-KSRADRKPLGVGRGRGRGREDGPGVRP-AKGMGRGF 215
           IRGNTIKYLRVPDEVIDKVQEET KSR+DR+P GVGRGRGRG     G +P  +G+GRG 
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETSKSRSDRRPPGVGRGRGRG---DIGTKPGGRGIGRGQ 120

Query: 216 DDGAKAASGGRGKGGPGGKPGANRVGGRGRG 245
           DDG     GGRG+GG GGK G  + GGRGRG
Sbjct: 121 DDGGSKGGGGRGRGGIGGK-GGIKGGGRGRG 147

[Close]
BLAST of Csa4G486190 vs. Swiss-Prot
Match: LSM4_FAGSY (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica GN=LSM4 PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 4.3e-63
Identity = 121/150 (80.67%), Postives = 124/150 (82.67%), Query Frame = 1 

Query: 96  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 155
           MLPLSLLKTAQGHPMLVELK+GETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMP+CY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCY 60

Query: 156 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRG-FD 215
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKP GVGRGRGRGRE+G G R  +G GR    
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREEGSGARQVRGAGRDVMM 120

Query: 216 DGAKAASGGRGKGGPGGKPGANRVGGRGRG 245
             AKA    RG+G   GK G    GGRGRG
Sbjct: 121 QVAKAWVEVRGRGASAGKSGGR--GGRGRG 148

[Close]
BLAST of Csa4G486190 vs. Swiss-Prot
Match: LSM4_ARATH (Sm-like protein LSM4 OS=Arabidopsis thaliana GN=LSM4 PE=1 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.6e-57
Identity = 115/149 (77.18%), Postives = 117/149 (78.52%), Query Frame = 1 

Query: 96  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 155
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 156 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 215
           IRGNTIKYLRVPDEVIDKVQEE K+R DRKP GVGRGRGRG +DG               
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEE-KTRTDRKPPGVGRGRGRGVDDG--------------- 120

Query: 216 GAKAASGGRGKGGPGGKPGANRVGGRGRG 245
           GA+    GRG+G   GK G NR  GRGRG
Sbjct: 121 GAR----GRGRGTSMGKMGGNRGAGRGRG 129

[Close]
BLAST of Csa4G486190 vs. Swiss-Prot
Match: LSM4_MOUSE (U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.6e-44
Identity = 92/142 (64.79%), Postives = 102/142 (71.83%), Query Frame = 1 

Query: 96  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 155
           MLPLSLLKTAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECY
Sbjct: 1   MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60

Query: 156 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 215
           IRG+TIKYLR+PDE+ID V+EE             +GRGRG   GP  +  K  GRG   
Sbjct: 61  IRGSTIKYLRIPDEIIDMVREE-----------AAKGRGRG---GPQQKQQK--GRGMGG 120

Query: 216 GAKAASGGRGKGGPGGKPGANR 238
             +   GGRG+   GG PGA R
Sbjct: 121 AGRGVFGGRGR---GGIPGAGR 123

[Close]
BLAST of Csa4G486190 vs. TrEMBL
Match: A0A0A0L3Q6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G486190 PE=4 SV=1)

HSP 1 Score: 508.4 bits (1308), Expect = 4.7e-141
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 1 

Query: 1   MRICDLYGGGDIMDQPPTTPSSLRHLSLSLRHSPPLTVSLSPPADAITCRSPFAPLDSSD 60
           MRICDLYGGGDIMDQPPTTPSSLRHLSLSLRHSPPLTVSLSPPADAITCRSPFAPLDSSD
Sbjct: 1   MRICDLYGGGDIMDQPPTTPSSLRHLSLSLRHSPPLTVSLSPPADAITCRSPFAPLDSSD 60

Query: 61  DNHLVALRHPLPPLASPNLKVEVVSASSVCFISLKMLPLSLLKTAQGHPMLVELKNGETY 120
           DNHLVALRHPLPPLASPNLKVEVVSASSVCFISLKMLPLSLLKTAQGHPMLVELKNGETY
Sbjct: 61  DNHLVALRHPLPPLASPNLKVEVVSASSVCFISLKMLPLSLLKTAQGHPMLVELKNGETY 120

Query: 121 NGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKS 180
           NGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKS
Sbjct: 121 NGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKS 180

Query: 181 RADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDDGAKAASGGRGKGGPGGKPGANRVGG 240
           RADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDDGAKAASGGRGKGGPGGKPGANRVGG
Sbjct: 181 RADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDDGAKAASGGRGKGGPGGKPGANRVGG 240

Query: 241 RGRG 245
           RGRG
Sbjct: 241 RGRG 244

[Close]
BLAST of Csa4G486190 vs. TrEMBL
Match: A0A0A0K9I4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G302350 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.5e-83
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1 

Query: 96  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 155
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 156 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 215
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 120

Query: 216 GAKAASGGRGKGGPGGKPGANRVGGRGRG 245
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]
BLAST of Csa4G486190 vs. TrEMBL
Match: A0A0B2S9U8_GLYSO (Putative U6 snRNA-associated Sm-like protein LSm4 OS=Glycine soja GN=glysoja_002099 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.9e-74
Identity = 138/150 (92.00%), Postives = 140/150 (93.33%), Query Frame = 1 

Query: 96  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 155
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 156 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 215
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKP GVGRGRGRGREDGPG RPAKG+GRG DD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREDGPGGRPAKGIGRGLDD 120

Query: 216 -GAKAASGGRGKGGPGGKPGANRVGGRGRG 245
            GAK A GGRG+GGP GKPG NR  GRGRG
Sbjct: 121 GGAKGAGGGRGRGGPSGKPGGNR--GRGRG 148

[Close]
BLAST of Csa4G486190 vs. TrEMBL
Match: I1NB52_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.9e-74
Identity = 138/150 (92.00%), Postives = 140/150 (93.33%), Query Frame = 1 

Query: 96  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 155
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 156 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 215
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKP GVGRGRGRGREDGPG RPAKG+GRG DD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREDGPGGRPAKGIGRGLDD 120

Query: 216 -GAKAASGGRGKGGPGGKPGANRVGGRGRG 245
            GAK A GGRG+GGP GKPG NR  GRGRG
Sbjct: 121 GGAKGAGGGRGRGGPSGKPGGNR--GRGRG 148

[Close]
BLAST of Csa4G486190 vs. TrEMBL
Match: A0A0B2P7T6_GLYSO (Putative U6 snRNA-associated Sm-like protein LSm4 OS=Glycine soja GN=glysoja_010957 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 5.0e-74
Identity = 133/149 (89.26%), Postives = 136/149 (91.28%), Query Frame = 1 

Query: 96  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 155
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 156 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 215
           IRGNTIKYLRVPDEVIDKVQEETKSR DRKP GVGRGRGRGREDGPG R  KG+GRG D+
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRQPKGIGRGLDE 120

Query: 216 GAKAASGGRGKGGPGGKPGANRVGGRGRG 245
           G     GGRG+GGPGGKPG NR GGRGRG
Sbjct: 121 GGPKGQGGRGRGGPGGKPGGNRGGGRGRG 149

[Close]
BLAST of Csa4G486190 vs. TAIR10
Match: AT5G27720.1 (AT5G27720.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 224.2 bits (570), Expect = 9.0e-59
Identity = 115/149 (77.18%), Postives = 117/149 (78.52%), Query Frame = 1 

Query: 96  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 155
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 156 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 215
           IRGNTIKYLRVPDEVIDKVQEE K+R DRKP GVGRGRGRG +DG               
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEE-KTRTDRKPPGVGRGRGRGVDDG--------------- 120

Query: 216 GAKAASGGRGKGGPGGKPGANRVGGRGRG 245
           GA+    GRG+G   GK G NR  GRGRG
Sbjct: 121 GAR----GRGRGTSMGKMGGNRGAGRGRG 129

[Close]
BLAST of Csa4G486190 vs. TAIR10
Match: AT1G20580.1 (AT1G20580.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 76.3 bits (186), Expect = 3.0e-14
Identity = 47/138 (34.06%), Postives = 72/138 (52.17%), Query Frame = 1 

Query: 97  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 156
           +P+ LL  A GH + VELK+GE Y G ++ C+   N  L ++  T+KDG +  ++   +I
Sbjct: 7   IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDG-KVSQLEHVFI 66

Query: 157 RGNTIKYLRVPD-----EVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGR 216
           RG+ ++++ +PD      +  ++    K ++    LGVGRGRG  R      +PA G GR
Sbjct: 67  RGSKVRFMVIPDILKHAPMFKRLDARIKGKS--SSLGVGRGRGAMRG-----KPAAGPGR 126

Query: 217 GFDDGAKAASGGRGKGGP 230
           G        +GGRG   P
Sbjct: 127 G--------TGGRGAVPP 128

[Close]
BLAST of Csa4G486190 vs. TAIR10
Match: AT1G76300.1 (AT1G76300.1 snRNP core protein SMD3)

HSP 1 Score: 74.7 bits (182), Expect = 8.8e-14
Identity = 44/134 (32.84%), Postives = 70/134 (52.24%), Query Frame = 1 

Query: 97  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 156
           +P+ LL  + GH + VE+K+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I
Sbjct: 7   IPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFI 66

Query: 157 RGNTIKYLRVPDEVID-KVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 216
           RG+ +++L +PD + +  + ++ + +     LGVGRGRG           AKG GRG   
Sbjct: 67  RGSLVRFLVIPDMLKNAPMFKDVRGKGKSASLGVGRGRGAAMR-------AKGTGRG--- 125

Query: 217 GAKAASGGRGKGGP 230
                 GGRG   P
Sbjct: 127 ----TGGGRGAVPP 125

[Close]
BLAST of Csa4G486190 vs. NCBI nr
Match: gi|700199613|gb|KGN54771.1| (hypothetical protein Csa_4G486190 [Cucumis sativus])

HSP 1 Score: 508.4 bits (1308), Expect = 6.7e-141
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 1 

Query: 1   MRICDLYGGGDIMDQPPTTPSSLRHLSLSLRHSPPLTVSLSPPADAITCRSPFAPLDSSD 60
           MRICDLYGGGDIMDQPPTTPSSLRHLSLSLRHSPPLTVSLSPPADAITCRSPFAPLDSSD
Sbjct: 1   MRICDLYGGGDIMDQPPTTPSSLRHLSLSLRHSPPLTVSLSPPADAITCRSPFAPLDSSD 60

Query: 61  DNHLVALRHPLPPLASPNLKVEVVSASSVCFISLKMLPLSLLKTAQGHPMLVELKNGETY 120
           DNHLVALRHPLPPLASPNLKVEVVSASSVCFISLKMLPLSLLKTAQGHPMLVELKNGETY
Sbjct: 61  DNHLVALRHPLPPLASPNLKVEVVSASSVCFISLKMLPLSLLKTAQGHPMLVELKNGETY 120

Query: 121 NGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKS 180
           NGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKS
Sbjct: 121 NGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKS 180

Query: 181 RADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDDGAKAASGGRGKGGPGGKPGANRVGG 240
           RADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDDGAKAASGGRGKGGPGGKPGANRVGG
Sbjct: 181 RADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDDGAKAASGGRGKGGPGGKPGANRVGG 240

Query: 241 RGRG 245
           RGRG
Sbjct: 241 RGRG 244

[Close]
BLAST of Csa4G486190 vs. NCBI nr
Match: gi|778694870|ref|XP_011653886.1| (PREDICTED: sm-like protein LSM4 [Cucumis sativus])

HSP 1 Score: 317.4 bits (812), Expect = 2.2e-83
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1 

Query: 96  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 155
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 156 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 215
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 120

Query: 216 GAKAASGGRGKGGPGGKPGANRVGGRGRG 245
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]
BLAST of Csa4G486190 vs. NCBI nr
Match: gi|659109077|ref|XP_008454536.1| (PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo])

HSP 1 Score: 314.7 bits (805), Expect = 1.4e-82
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 1 

Query: 96  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 155
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 156 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 215
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPG RPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 216 GAKAASGGRGKGGPGGKPGANRVGGRGRG 245
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]
BLAST of Csa4G486190 vs. NCBI nr
Match: gi|659123987|ref|XP_008461936.1| (PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo])

HSP 1 Score: 303.9 bits (777), Expect = 2.5e-79
Identity = 145/149 (97.32%), Postives = 145/149 (97.32%), Query Frame = 1 

Query: 96  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 155
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPE Y
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFY 60

Query: 156 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 215
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPG R AKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRSAKGMGRGFDD 120

Query: 216 GAKAASGGRGKGGPGGKPGANRVGGRGRG 245
           GAKAASGGRGKGGPGGKPGA RVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGAIRVGGRGRG 149

[Close]
BLAST of Csa4G486190 vs. NCBI nr
Match: gi|1012026782|ref|XP_015951102.1| (PREDICTED: sm-like protein LSM4 [Arachis duranensis])

HSP 1 Score: 289.3 bits (739), Expect = 6.4e-75
Identity = 137/150 (91.33%), Postives = 139/150 (92.67%), Query Frame = 1 

Query: 96  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 155
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 156 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 215
           IRGNTIKYLRVPDEVIDKVQEETKSR DRKP GVGRGRGRGREDGPG RPAKGMGRG D+
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRGDRKPPGVGRGRGRGREDGPGGRPAKGMGRGLDE 120

Query: 216 -GAKAASGGRGKGGPGGKPGANRVGGRGRG 245
            GAK   GGRG+GGPGGKPG NR  GRGRG
Sbjct: 121 GGAKGPGGGRGRGGPGGKPGGNRGAGRGRG 150

The following BLAST results are available for this feature:
BLAST of Csa4G486190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LSM4_TOBAC8.7e-6481.33Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1[more]
LSM4_ORYSJ1.9e-6380.79Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonic... [more]
LSM4_FAGSY4.3e-6380.67Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica GN=LSM4 PE=... [more]
LSM4_ARATH1.6e-5777.18Sm-like protein LSM4 OS=Arabidopsis thaliana GN=LSM4 PE=1 SV=1[more]
LSM4_MOUSE2.6e-4464.79U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4 PE=1 SV=1[more]
BLAST of Csa4G486190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3Q6_CUCSA4.7e-141100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G486190 PE=4 SV=1[more]
A0A0A0K9I4_CUCSA1.5e-83100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G302350 PE=4 SV=1[more]
A0A0B2S9U8_GLYSO2.9e-7492.00Putative U6 snRNA-associated Sm-like protein LSm4 OS=Glycine soja GN=glysoja_002... [more]
I1NB52_SOYBN2.9e-7492.00Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2P7T6_GLYSO5.0e-7489.26Putative U6 snRNA-associated Sm-like protein LSm4 OS=Glycine soja GN=glysoja_010... [more]
BLAST of Csa4G486190 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G27720.19.0e-5977.18 Small nuclear ribonucleoprotein family protein[more]
AT1G20580.13.0e-1434.06 Small nuclear ribonucleoprotein family protein[more]
AT1G76300.18.8e-1432.84 snRNP core protein SMD3[more]
BLAST of Csa4G486190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199613|gb|KGN54771.1|6.7e-141100.00hypothetical protein Csa_4G486190 [Cucumis sativus][more]
gi|778694870|ref|XP_011653886.1|2.2e-83100.00PREDICTED: sm-like protein LSM4 [Cucumis sativus][more]
gi|659109077|ref|XP_008454536.1|1.4e-8299.33PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo][more]
gi|659123987|ref|XP_008461936.1|2.5e-7997.32PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo][more]
gi|1012026782|ref|XP_015951102.1|6.4e-7591.33PREDICTED: sm-like protein LSM4 [Arachis duranensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf
IPR027141LSm4/Sm_D1/D3
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
biological_process GO:0033962 cytoplasmic mRNA processing body assembly
biological_process GO:0000956 nuclear-transcribed mRNA catabolic process
biological_process GO:0000245 spliceosomal complex assembly
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005575 cellular_component
cellular_component GO:0000932 cytoplasmic mRNA processing body
cellular_component GO:0097526 spliceosomal tri-snRNP complex
cellular_component GO:0005688 U6 snRNP
molecular_function GO:0003674 molecular_function
molecular_function GO:0017070 U6 snRNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU097548cucumber EST collection version 3.0transcribed_cluster
CU113606cucumber EST collection version 3.0transcribed_cluster
CU135258cucumber EST collection version 3.0transcribed_cluster
CU174628cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G486190.1Csa4G486190.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU135258CU135258transcribed_cluster
CU113606CU113606transcribed_cluster
CU174628CU174628transcribed_cluster
CU097548CU097548transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 101..165
score: 1.8
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 100..166
score: 1.4
IPR010920LSM domainunknownSSF50182Sm-like ribonucleoproteinscoord: 98..213
score: 4.53
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 94..243
score: 6.0E
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 96..168
score: 1.5
NoneNo IPR availablePANTHERPTHR23338:SF24SUBFAMILY NOT NAMEDcoord: 94..243
score: 6.0E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G486190CSPI04G19870Wild cucumber (PI 183967)cpicuB181
Csa4G486190Cucsa.274390Cucumber (Gy14) v1cgycuB390
Csa4G486190CsGy4G019240Cucumber (Gy14) v2cgybcuB173
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G486190Silver-seed gourdcarcuB0311
Csa4G486190Silver-seed gourdcarcuB0545
Csa4G486190Watermelon (97103) v2cuwmbB303
Csa4G486190Watermelon (97103) v2cuwmbB293
Csa4G486190Wax gourdcuwgoB394
Csa4G486190Wax gourdcuwgoB398
Csa4G486190Cucurbita maxima (Rimu)cmacuB665
Csa4G486190Cucurbita maxima (Rimu)cmacuB862
Csa4G486190Cucurbita moschata (Rifu)cmocuB850
Csa4G486190Melon (DHL92) v3.5.1cumeB326
Csa4G486190Watermelon (Charleston Gray)cuwcgB296
Csa4G486190Watermelon (Charleston Gray)cuwcgB306
Csa4G486190Watermelon (97103) v1cuwmB333
Csa4G486190Cucurbita pepo (Zucchini)cpecuB073
Csa4G486190Cucurbita pepo (Zucchini)cpecuB499
Csa4G486190Bottle gourd (USVL1VR-Ls)culsiB250
Csa4G486190Bottle gourd (USVL1VR-Ls)culsiB251
Csa4G486190Melon (DHL92) v3.6.1cumedB312