Csa4G456180 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G456180
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 16929966 .. 16930239 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGATTACATGTATCCAAGTGAAACATCAAGTGGTAGGCAATCACCCTATGGTTGTGTTGGAAGTTTCACAAAGACCTCGAAACCGAGATGGTTGAGGCATCTAAGCAAGGGGGGTACGCATTGAAAAATGCTAAGGGCTACACGGCCAAAGAATCTCAAACAAGTGTTGTGCGGCCTAGTGAATTCTAAACATTAAATGCCAAGAGCCCTTGCCACATGATGAGCATGAGTTGGATTACAGAAGACTAGAGATTCGTAAAGCAAGTTAA

mRNA sequence

ATGAGAGATTACATGTATCCAAGTGAAACATCAAGTGGTAGGCAATCACCCTATGGTTGTGTTGGAAGTTTCACAAAGACCTCGAAACCGAGATGGTTGAGGCATCTAAGCAAGGGGGAGCCCTTGCCACATGATGAGCATGAGTTGGATTACAGAAGACTAGAGATTCGTAAAGCAAGTTAA

Coding sequence (CDS)

ATGAGAGATTACATGTATCCAAGTGAAACATCAAGTGGTAGGCAATCACCCTATGGTTGTGTTGGAAGTTTCACAAAGACCTCGAAACCGAGATGGTTGAGGCATCTAAGCAAGGGGGAGCCCTTGCCACATGATGAGCATGAGTTGGATTACAGAAGACTAGAGATTCGTAAAGCAAGTTAA

Protein sequence

MRDYMYPSETSSGRQSPYGCVGSFTKTSKPRWLRHLSKGEPLPHDEHELDYRRLEIRKAS*
Homology
[Close]
BLAST of Csa4G456180 vs. TrEMBL
Match: A0A0A0L2C4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G456180 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.9e-28
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1  MRDYMYPSETSSGRQSPYGCVGSFTKTSKPRWLRHLSKGEPLPHDEHELDYRRLEIRKAS 60
          MRDYMYPSETSSGRQSPYGCVGSFTKTSKPRWLRHLSKGEPLPHDEHELDYRRLEIRKAS
Sbjct: 1  MRDYMYPSETSSGRQSPYGCVGSFTKTSKPRWLRHLSKGEPLPHDEHELDYRRLEIRKAS 60

[Close]
BLAST of Csa4G456180 vs. NCBI nr
Match: gi|700199604|gb|KGN54762.1| (hypothetical protein Csa_4G456180 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 5.6e-28
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1  MRDYMYPSETSSGRQSPYGCVGSFTKTSKPRWLRHLSKGEPLPHDEHELDYRRLEIRKAS 60
          MRDYMYPSETSSGRQSPYGCVGSFTKTSKPRWLRHLSKGEPLPHDEHELDYRRLEIRKAS
Sbjct: 1  MRDYMYPSETSSGRQSPYGCVGSFTKTSKPRWLRHLSKGEPLPHDEHELDYRRLEIRKAS 60

The following BLAST results are available for this feature:
BLAST of Csa4G456180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2C4_CUCSA3.9e-28100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G456180 PE=4 SV=1[more]
BLAST of Csa4G456180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199604|gb|KGN54762.1|5.6e-28100.00hypothetical protein Csa_4G456180 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G456180.1Csa4G456180.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G456180Bottle gourd (USVL1VR-Ls)culsiB250
Csa4G456180Bottle gourd (USVL1VR-Ls)culsiB251
Csa4G456180Cucumber (Gy14) v2cgybcuB167
Csa4G456180Cucumber (Gy14) v2cgybcuB173
Csa4G456180Melon (DHL92) v3.6.1cumedB312
Csa4G456180Silver-seed gourdcarcuB0545
Csa4G456180Watermelon (97103) v2cuwmbB303
Csa4G456180Watermelon (97103) v2cuwmbB293
Csa4G456180Wax gourdcuwgoB394
Csa4G456180Wax gourdcuwgoB398
Csa4G456180Cucurbita maxima (Rimu)cmacuB665
Csa4G456180Melon (DHL92) v3.5.1cumeB326
Csa4G456180Watermelon (Charleston Gray)cuwcgB296
Csa4G456180Watermelon (Charleston Gray)cuwcgB306
Csa4G456180Cucurbita pepo (Zucchini)cpecuB073