Csa4G438540 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G438540
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 16637027 .. 16637253 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAAATTGTCGGTGATAAGCCAGAGGAAGGTGAGGATGATGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGTTATAATGGCCGGGACAAAGAGTTGTGATCCCGCGAAGGTGAGCTAACTCCAAAATCTCATCCTCAGTTCGGATTGTAGGCTGCAACTCGCCTGCATGAAGTCGGAATCGCTAGTAAGATGCCTATGCTTCTTGCTACATGA

mRNA sequence

ATGAGTAAATTGTCGGTGATAAGCCAGAGGAAGGTGAGGATGATGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGTTATAATGGCCGGGACAAAGAGTTGTGATCCCGCGAAGGCTGCAACTCGCCTGCATGAAGTCGGAATCGCTAGTAAGATGCCTATGCTTCTTGCTACATGA

Coding sequence (CDS)

ATGAGTAAATTGTCGGTGATAAGCCAGAGGAAGGTGAGGATGATGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGTTATAATGGCCGGGACAAAGAGTTGTGATCCCGCGAAGGCTGCAACTCGCCTGCATGAAGTCGGAATCGCTAGTAAGATGCCTATGCTTCTTGCTACATGA

Protein sequence

MSKLSVISQRKVRMMSSHHAPYALGDTRVIMAGTKSCDPAKAATRLHEVGIASKMPMLLAT*
Homology
[Close]
BLAST of Csa4G438540 vs. TrEMBL
Match: A0A0A0L3L9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G438540 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.1e-25
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1  MSKLSVISQRKVRMMSSHHAPYALGDTRVIMAGTKSCDPAKAATRLHEVGIASKMPMLLA 60
          MSKLSVISQRKVRMMSSHHAPYALGDTRVIMAGTKSCDPAKAATRLHEVGIASKMPMLLA
Sbjct: 1  MSKLSVISQRKVRMMSSHHAPYALGDTRVIMAGTKSCDPAKAATRLHEVGIASKMPMLLA 60

Query: 61 T 62
          T
Sbjct: 61 T 61

[Close]
BLAST of Csa4G438540 vs. NCBI nr
Match: gi|700199578|gb|KGN54736.1| (hypothetical protein Csa_4G438540 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 4.5e-25
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1  MSKLSVISQRKVRMMSSHHAPYALGDTRVIMAGTKSCDPAKAATRLHEVGIASKMPMLLA 60
          MSKLSVISQRKVRMMSSHHAPYALGDTRVIMAGTKSCDPAKAATRLHEVGIASKMPMLLA
Sbjct: 1  MSKLSVISQRKVRMMSSHHAPYALGDTRVIMAGTKSCDPAKAATRLHEVGIASKMPMLLA 60

Query: 61 T 62
          T
Sbjct: 61 T 61

The following BLAST results are available for this feature:
BLAST of Csa4G438540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3L9_CUCSA3.1e-25100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G438540 PE=4 SV=1[more]
BLAST of Csa4G438540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199578|gb|KGN54736.1|4.5e-25100.00hypothetical protein Csa_4G438540 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G438540.1Csa4G438540.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G438540CSPI04G19470Wild cucumber (PI 183967)cpicuB181
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G438540Wax gourdcuwgoB398
Csa4G438540Cucumber (Gy14) v1cgycuB259
Csa4G438540Cucurbita maxima (Rimu)cmacuB665
Csa4G438540Cucurbita maxima (Rimu)cmacuB669
Csa4G438540Cucurbita maxima (Rimu)cmacuB870
Csa4G438540Cucurbita moschata (Rifu)cmocuB660
Csa4G438540Cucurbita moschata (Rifu)cmocuB859
Csa4G438540Melon (DHL92) v3.5.1cumeB328
Csa4G438540Watermelon (Charleston Gray)cuwcgB306
Csa4G438540Cucurbita pepo (Zucchini)cpecuB073
Csa4G438540Cucurbita pepo (Zucchini)cpecuB492
Csa4G438540Bottle gourd (USVL1VR-Ls)culsiB251
Csa4G438540Cucumber (Gy14) v2cgybcuB167
Csa4G438540Melon (DHL92) v3.6.1cumedB314
Csa4G438540Silver-seed gourdcarcuB0505
Csa4G438540Silver-seed gourdcarcuB0545
Csa4G438540Watermelon (97103) v2cuwmbB303