Csa4G437510 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G437510
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 16565313 .. 16566023 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCAGATTCCGGCAATCAATAGAAACCCTTTCGAAGGAAAAAAAAGTATGGCTGGTGCTGTATTTTTCGACCGGTCGGCCTACTCCTTGCCGGAGAAAAAAGAGCATAACAAGCGCCAAAATTCAAATTCTGTAGGAGATCAACAGCCGCGCATGGGGAAAGAGGCAAAAGATTTATGGAGGAAAGAGAAAAACAGTGGCAATAAAGAATCTGAAGTGAATGCTTTTTGTTCTCCCAAAATTCCATCTGTCAACAGCTCCCTAAATGAATTAATTGCCACCAATTCTGTAGGAGAAGAGCAACAGCCGCGCGTGGGGAAAGAGGCAAAAGATTTATGGAGGAAAGAGAAAAACAGTGGCAATAAAAAATCTAAAGTTAATGCTGTTTGTTCTTCCAAAATTCCATTTGTCAACAGCTCCCTAAATGAATTAATTGGCACCAATAAAAAAGAATCCAACTTGATCGGTCCCACAAAAGCACCTTGCAAAGGATCTTCAGGGTTTTGGTATTCCAACAAGGAAGAGGAGGAGATGGGGCCCACAAATATTAAAGATAATGGTTCTCTCTCCCTCCCTAATGAAGCACTCCAACAGTCCATCTCTCTGGGCAACAAAAACAAGCGTAAGGTCAAAGGAAAAAAAAGATCAAACAAAAAGTCCCTTGTTCAAACAGTGGTTAATGACCTCCAGAAATCCAAGAACTACTAG

mRNA sequence

ATGGAGCAGATTCCGGCAATCAATAGAAACCCTTTCGAAGGAAAAAAAAGTATGGCTGGTGCTGTATTTTTCGACCGGTCGGCCTACTCCTTGCCGGAGAAAAAAGAGCATAACAAGCGCCAAAATTCAAATTCTGTAGGAGATCAACAGCCGCGCATGGGGAAAGAGGCAAAAGATTTATGGAGGAAAGAGAAAAACAGTGGCAATAAAGAATCTGAAGTGAATGCTTTTTGTTCTCCCAAAATTCCATCTGTCAACAGCTCCCTAAATGAATTAATTGCCACCAATTCTGTAGGAGAAGAGCAACAGCCGCGCGTGGGGAAAGAGGCAAAAGATTTATGGAGGAAAGAGAAAAACAGTGGCAATAAAAAATCTAAAGTTAATGCTGTTTGTTCTTCCAAAATTCCATTTGTCAACAGCTCCCTAAATGAATTAATTGGCACCAATAAAAAAGAATCCAACTTGATCGGTCCCACAAAAGCACCTTGCAAAGGATCTTCAGGGTTTTGGTATTCCAACAAGGAAGAGGAGGAGATGGGGCCCACAAATATTAAAGATAATGGTTCTCTCTCCCTCCCTAATGAAGCACTCCAACAGTCCATCTCTCTGGGCAACAAAAACAAGCGTAAGGTCAAAGGAAAAAAAAGATCAAACAAAAAGTCCCTTGTTCAAACAGTGGTTAATGACCTCCAGAAATCCAAGAACTACTAG

Coding sequence (CDS)

ATGGAGCAGATTCCGGCAATCAATAGAAACCCTTTCGAAGGAAAAAAAAGTATGGCTGGTGCTGTATTTTTCGACCGGTCGGCCTACTCCTTGCCGGAGAAAAAAGAGCATAACAAGCGCCAAAATTCAAATTCTGTAGGAGATCAACAGCCGCGCATGGGGAAAGAGGCAAAAGATTTATGGAGGAAAGAGAAAAACAGTGGCAATAAAGAATCTGAAGTGAATGCTTTTTGTTCTCCCAAAATTCCATCTGTCAACAGCTCCCTAAATGAATTAATTGCCACCAATTCTGTAGGAGAAGAGCAACAGCCGCGCGTGGGGAAAGAGGCAAAAGATTTATGGAGGAAAGAGAAAAACAGTGGCAATAAAAAATCTAAAGTTAATGCTGTTTGTTCTTCCAAAATTCCATTTGTCAACAGCTCCCTAAATGAATTAATTGGCACCAATAAAAAAGAATCCAACTTGATCGGTCCCACAAAAGCACCTTGCAAAGGATCTTCAGGGTTTTGGTATTCCAACAAGGAAGAGGAGGAGATGGGGCCCACAAATATTAAAGATAATGGTTCTCTCTCCCTCCCTAATGAAGCACTCCAACAGTCCATCTCTCTGGGCAACAAAAACAAGCGTAAGGTCAAAGGAAAAAAAAGATCAAACAAAAAGTCCCTTGTTCAAACAGTGGTTAATGACCTCCAGAAATCCAAGAACTACTAG

Protein sequence

MEQIPAINRNPFEGKKSMAGAVFFDRSAYSLPEKKEHNKRQNSNSVGDQQPRMGKEAKDLWRKEKNSGNKESEVNAFCSPKIPSVNSSLNELIATNSVGEEQQPRVGKEAKDLWRKEKNSGNKKSKVNAVCSSKIPFVNSSLNELIGTNKKESNLIGPTKAPCKGSSGFWYSNKEEEEMGPTNIKDNGSLSLPNEALQQSISLGNKNKRKVKGKKRSNKKSLVQTVVNDLQKSKNY*
Homology
[Close]
BLAST of Csa4G437510 vs. TrEMBL
Match: A0A0A0L3L4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437510 PE=4 SV=1)

HSP 1 Score: 475.3 bits (1222), Expect = 4.3e-131
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 1 

Query: 1   MEQIPAINRNPFEGKKSMAGAVFFDRSAYSLPEKKEHNKRQNSNSVGDQQPRMGKEAKDL 60
           MEQIPAINRNPFEGKKSMAGAVFFDRSAYSLPEKKEHNKRQNSNSVGDQQPRMGKEAKDL
Sbjct: 1   MEQIPAINRNPFEGKKSMAGAVFFDRSAYSLPEKKEHNKRQNSNSVGDQQPRMGKEAKDL 60

Query: 61  WRKEKNSGNKESEVNAFCSPKIPSVNSSLNELIATNSVGEEQQPRVGKEAKDLWRKEKNS 120
           WRKEKNSGNKESEVNAFCSPKIPSVNSSLNELIATNSVGEEQQPRVGKEAKDLWRKEKNS
Sbjct: 61  WRKEKNSGNKESEVNAFCSPKIPSVNSSLNELIATNSVGEEQQPRVGKEAKDLWRKEKNS 120

Query: 121 GNKKSKVNAVCSSKIPFVNSSLNELIGTNKKESNLIGPTKAPCKGSSGFWYSNKEEEEMG 180
           GNKKSKVNAVCSSKIPFVNSSLNELIGTNKKESNLIGPTKAPCKGSSGFWYSNKEEEEMG
Sbjct: 121 GNKKSKVNAVCSSKIPFVNSSLNELIGTNKKESNLIGPTKAPCKGSSGFWYSNKEEEEMG 180

Query: 181 PTNIKDNGSLSLPNEALQQSISLGNKNKRKVKGKKRSNKKSLVQTVVNDLQKSKNY 237
           PTNIKDNGSLSLPNEALQQSISLGNKNKRKVKGKKRSNKKSLVQTVVNDLQKSKNY
Sbjct: 181 PTNIKDNGSLSLPNEALQQSISLGNKNKRKVKGKKRSNKKSLVQTVVNDLQKSKNY 236

[Close]
BLAST of Csa4G437510 vs. TrEMBL
Match: A0A0A0LCB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G253530 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.0e-44
Identity = 100/134 (74.63%), Postives = 106/134 (79.10%), Query Frame = 1 

Query: 1   MEQIPAINRNPFEGKKSMAG---AVFFDRSAYSLPEKKEHNKRQNSNSVGD-QQPRMGKE 60
           MEQIPAINRNPFEGKK          F  +   L  +K  NK QNSNSVG+ QQPRMGK+
Sbjct: 1   MEQIPAINRNPFEGKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKD 60

Query: 61  AKDLWRKEKNSGNKESEVNAFCSPKIPSVNSSLNELIATNSVGEEQQPRVGKEAKDLWRK 120
           AKDLWRK+KNSGNKE EVNA CSPKIPSVNSSLNEL A  SVGEEQQPRVGKEAKDLWRK
Sbjct: 61  AKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNELTAAKSVGEEQQPRVGKEAKDLWRK 120

Query: 121 EKNSGNKKSKVNAV 131
           EKN GNK+S VNAV
Sbjct: 121 EKNGGNKESDVNAV 134

[Close]
BLAST of Csa4G437510 vs. TrEMBL
Match: A0A0A0LCB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G253530 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.5e-16
Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 1 

Query: 68  GNKESEVNAFCSP-KIPSV----NSSLNELIATNSVGEEQQPRVGKEAKDLWRKEKNSGN 127
           G K  E N +C   ++  V        N+L  +NSVGEEQQPR+GK+AKDLWRK+KNSGN
Sbjct: 14  GKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKDAKDLWRKKKNSGN 73

Query: 128 KKSKVNAVCSSKIPFVNSSLNEL 146
           K+ +VNAVCS KIP VNSSLNEL
Sbjct: 74  KEFEVNAVCSPKIPSVNSSLNEL 96


HSP 2 Score: 60.5 bits (145), Expect = 3.3e-06
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 1 

Query: 117 EKNSGNKKSKVNAVCSSKIPFVNSSLNELIGTNKKESNLIGPTKAPCKGSSGFWYSN 174
           +++SGNK  +VNAVCS K P V+S LN+    NKK   L G  K  CKG+ GFWY+N
Sbjct: 12  KRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAANKK-IQLDGSHKTACKGTHGFWYAN 67

[Close]
BLAST of Csa4G437510 vs. TrEMBL
Match: A0A0A0LSX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G145900 PE=4 SV=1)

HSP 1 Score: 40.4 bits (93), Expect = 3.5e+00
Identity = 20/44 (45.45%), Postives = 29/44 (65.91%), Query Frame = 1 

Query: 53 MGKEAKDLWRKEKNSGNKESEVNAFCSPKIPSVNSSLNELIATN 97
          M  + + ++  +++SGNK  EVNA CS K PSV+S LN+  A N
Sbjct: 1  MWGKRQGIYGGKRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAAN 44

[Close]
BLAST of Csa4G437510 vs. NCBI nr
Match: gi|700199573|gb|KGN54731.1| (hypothetical protein Csa_4G437510 [Cucumis sativus])

HSP 1 Score: 475.3 bits (1222), Expect = 6.1e-131
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 1 

Query: 1   MEQIPAINRNPFEGKKSMAGAVFFDRSAYSLPEKKEHNKRQNSNSVGDQQPRMGKEAKDL 60
           MEQIPAINRNPFEGKKSMAGAVFFDRSAYSLPEKKEHNKRQNSNSVGDQQPRMGKEAKDL
Sbjct: 1   MEQIPAINRNPFEGKKSMAGAVFFDRSAYSLPEKKEHNKRQNSNSVGDQQPRMGKEAKDL 60

Query: 61  WRKEKNSGNKESEVNAFCSPKIPSVNSSLNELIATNSVGEEQQPRVGKEAKDLWRKEKNS 120
           WRKEKNSGNKESEVNAFCSPKIPSVNSSLNELIATNSVGEEQQPRVGKEAKDLWRKEKNS
Sbjct: 61  WRKEKNSGNKESEVNAFCSPKIPSVNSSLNELIATNSVGEEQQPRVGKEAKDLWRKEKNS 120

Query: 121 GNKKSKVNAVCSSKIPFVNSSLNELIGTNKKESNLIGPTKAPCKGSSGFWYSNKEEEEMG 180
           GNKKSKVNAVCSSKIPFVNSSLNELIGTNKKESNLIGPTKAPCKGSSGFWYSNKEEEEMG
Sbjct: 121 GNKKSKVNAVCSSKIPFVNSSLNELIGTNKKESNLIGPTKAPCKGSSGFWYSNKEEEEMG 180

Query: 181 PTNIKDNGSLSLPNEALQQSISLGNKNKRKVKGKKRSNKKSLVQTVVNDLQKSKNY 237
           PTNIKDNGSLSLPNEALQQSISLGNKNKRKVKGKKRSNKKSLVQTVVNDLQKSKNY
Sbjct: 181 PTNIKDNGSLSLPNEALQQSISLGNKNKRKVKGKKRSNKKSLVQTVVNDLQKSKNY 236

[Close]
BLAST of Csa4G437510 vs. NCBI nr
Match: gi|700202563|gb|KGN57696.1| (hypothetical protein Csa_3G253530 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 1.5e-44
Identity = 100/134 (74.63%), Postives = 106/134 (79.10%), Query Frame = 1 

Query: 1   MEQIPAINRNPFEGKKSMAG---AVFFDRSAYSLPEKKEHNKRQNSNSVGD-QQPRMGKE 60
           MEQIPAINRNPFEGKK          F  +   L  +K  NK QNSNSVG+ QQPRMGK+
Sbjct: 1   MEQIPAINRNPFEGKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKD 60

Query: 61  AKDLWRKEKNSGNKESEVNAFCSPKIPSVNSSLNELIATNSVGEEQQPRVGKEAKDLWRK 120
           AKDLWRK+KNSGNKE EVNA CSPKIPSVNSSLNEL A  SVGEEQQPRVGKEAKDLWRK
Sbjct: 61  AKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNELTAAKSVGEEQQPRVGKEAKDLWRK 120

Query: 121 EKNSGNKKSKVNAV 131
           EKN GNK+S VNAV
Sbjct: 121 EKNGGNKESDVNAV 134

[Close]
BLAST of Csa4G437510 vs. NCBI nr
Match: gi|700202563|gb|KGN57696.1| (hypothetical protein Csa_3G253530 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 5.0e-16
Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 1 

Query: 68  GNKESEVNAFCSP-KIPSV----NSSLNELIATNSVGEEQQPRVGKEAKDLWRKEKNSGN 127
           G K  E N +C   ++  V        N+L  +NSVGEEQQPR+GK+AKDLWRK+KNSGN
Sbjct: 14  GKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKDAKDLWRKKKNSGN 73

Query: 128 KKSKVNAVCSSKIPFVNSSLNEL 146
           K+ +VNAVCS KIP VNSSLNEL
Sbjct: 74  KEFEVNAVCSPKIPSVNSSLNEL 96


HSP 2 Score: 60.5 bits (145), Expect = 4.7e-06
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 1 

Query: 117 EKNSGNKKSKVNAVCSSKIPFVNSSLNELIGTNKKESNLIGPTKAPCKGSSGFWYSN 174
           +++SGNK  +VNAVCS K P V+S LN+    NKK   L G  K  CKG+ GFWY+N
Sbjct: 12  KRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAANKK-IQLDGSHKTACKGTHGFWYAN 67

[Close]
BLAST of Csa4G437510 vs. NCBI nr
Match: gi|700209792|gb|KGN64888.1| (hypothetical protein Csa_1G145900 [Cucumis sativus])

HSP 1 Score: 40.4 bits (93), Expect = 5.0e+00
Identity = 20/44 (45.45%), Postives = 29/44 (65.91%), Query Frame = 1 

Query: 53 MGKEAKDLWRKEKNSGNKESEVNAFCSPKIPSVNSSLNELIATN 97
          M  + + ++  +++SGNK  EVNA CS K PSV+S LN+  A N
Sbjct: 1  MWGKRQGIYGGKRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAAN 44

The following BLAST results are available for this feature:
BLAST of Csa4G437510 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3L4_CUCSA4.3e-131100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437510 PE=4 SV=1[more]
A0A0A0LCB6_CUCSA1.0e-4474.63Uncharacterized protein OS=Cucumis sativus GN=Csa_3G253530 PE=4 SV=1[more]
A0A0A0LCB6_CUCSA3.5e-1660.24Uncharacterized protein OS=Cucumis sativus GN=Csa_3G253530 PE=4 SV=1[more]
A0A0A0LSX1_CUCSA3.5e+0045.45Uncharacterized protein OS=Cucumis sativus GN=Csa_1G145900 PE=4 SV=1[more]
BLAST of Csa4G437510 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199573|gb|KGN54731.1|6.1e-131100.00hypothetical protein Csa_4G437510 [Cucumis sativus][more]
gi|700202563|gb|KGN57696.1|1.5e-4474.63hypothetical protein Csa_3G253530 [Cucumis sativus][more]
gi|700202563|gb|KGN57696.1|5.0e-1660.24hypothetical protein Csa_3G253530 [Cucumis sativus][more]
gi|700209792|gb|KGN64888.1|5.0e+0045.45hypothetical protein Csa_1G145900 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU148604cucumber EST collection version 3.0transcribed_cluster
CU164141cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G437510.1Csa4G437510.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU148604CU148604transcribed_cluster
CU164141CU164141transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G437510CsGy4G018310Cucumber (Gy14) v2cgybcuB167
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G437510Cucurbita maxima (Rimu)cmacuB669
Csa4G437510Cucurbita maxima (Rimu)cmacuB870
Csa4G437510Cucurbita moschata (Rifu)cmocuB859
Csa4G437510Watermelon (Charleston Gray)cuwcgB306
Csa4G437510Watermelon (97103) v1cuwmB336
Csa4G437510Cucurbita pepo (Zucchini)cpecuB492
Csa4G437510Bottle gourd (USVL1VR-Ls)culsiB251
Csa4G437510Melon (DHL92) v3.6.1cumedB314
Csa4G437510Silver-seed gourdcarcuB0505
Csa4G437510Watermelon (97103) v2cuwmbB303
Csa4G437510Cucumber (Gy14) v1cgycuB259