Csa4G418550 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G418550
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Chaperone DnaK; contains IPR013126 (Heat shock protein 70 family)
Location	Chr4 : 15723045 .. 15723230 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTCACTTCTGTGCATGTCAGAGCAAAAGTTCTTGAATGATCGAGTAGGAAAATCTGTTGTAACAGTACCAGCATATTTCAATCTCTCAAAGGACGGCGACGAAAGATACTGGTCGGATTGCTGTCTTGAAATTCTTCGCATCATCAATGAACCAACTGCTGCTTCCCTTGCTTATGGCTGA

mRNA sequence

ATGAGCTCACTTCTGTGCATGTCAGAGCAAAAGTTCTTGAATGATCGAGTAGGAAAATCTGTTGTAACAGTACCAGCATATTTCAATCTCTCAAAGGACGGCGACGAAAGATACTGGTCGGATTGCTGTCTTGAAATTCTTCGCATCATCAATGAACCAACTGCTGCTTCCCTTGCTTATGGCTGA

Coding sequence (CDS)

ATGAGCTCACTTCTGTGCATGTCAGAGCAAAAGTTCTTGAATGATCGAGTAGGAAAATCTGTTGTAACAGTACCAGCATATTTCAATCTCTCAAAGGACGGCGACGAAAGATACTGGTCGGATTGCTGTCTTGAAATTCTTCGCATCATCAATGAACCAACTGCTGCTTCCCTTGCTTATGGCTGA

Protein sequence

MSSLLCMSEQKFLNDRVGKSVVTVPAYFNLSKDGDERYWSDCCLEILRIINEPTAASLAYG*

Homology

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BLAST of Csa4G418550 vs. Swiss-Prot
Match: HSP7S_PEA (Stromal 70 kDa heat shock-related protein, chloroplastic OS=Pisum sativum GN=HSP70 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 7.7e-09
Identity = 34/52 (65.38%), Postives = 37/52 (71.15%), Query Frame = 1


Query: 11  KFLNDRVGKSVVTVPAYFNLS-KDGDERYWSDCCLEILRIINEPTAASLAYG 62
           KFLND+V K+VVTVPAYFN S +   +       LE+LRIINEPTAASLAYG
Sbjct: 195 KFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 246

[Close]

BLAST of Csa4G418550 vs. Swiss-Prot
Match: HSP7S_SPIOL (Stromal 70 kDa heat shock-related protein, chloroplastic (Fragment) OS=Spinacia oleracea GN=CHSP70 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 7.7e-09
Identity = 34/52 (65.38%), Postives = 37/52 (71.15%), Query Frame = 1


Query: 11  KFLNDRVGKSVVTVPAYFNLS-KDGDERYWSDCCLEILRIINEPTAASLAYG 62
           KFLND+V K+VVTVPAYFN S +   +       LE+LRIINEPTAASLAYG
Sbjct: 75  KFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 126

[Close]

BLAST of Csa4G418550 vs. Swiss-Prot
Match: HSP7G_ARATH (Heat shock 70 kDa protein 7, chloroplastic OS=Arabidopsis thaliana GN=HSP70-7 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-08
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 1


Query: 11  KFLNDRVGKSVVTVPAYFNLS-KDGDERYWSDCCLEILRIINEPTAASLAYG 62
           +FLND+V K+V+TVPAYFN S +   +       LE+LRIINEPTAASLAYG
Sbjct: 205 RFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 256

[Close]

BLAST of Csa4G418550 vs. Swiss-Prot
Match: HSP7F_ARATH (Heat shock 70 kDa protein 6, chloroplastic OS=Arabidopsis thaliana GN=HSP70-6 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-08
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 1


Query: 11  KFLNDRVGKSVVTVPAYFNLS-KDGDERYWSDCCLEILRIINEPTAASLAYG 62
           +FLND+V K+V+TVPAYFN S +   +       LE+LRIINEPTAASLAYG
Sbjct: 205 RFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 256

[Close]

BLAST of Csa4G418550 vs. Swiss-Prot
Match: DNAK_RHILE (Chaperone protein DnaK OS=Rhizobium leguminosarum GN=dnaK PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.0e-08
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 1


Query: 10  QKFLNDRVGKSVVTVPAYFNLSKDGDERY-WSDCCLEILRIINEPTAASLAYG 62
           + +L ++V K+V+TVPAYFN ++ G  R   +   LE+LRIINEPTAA+LAYG
Sbjct: 128 ESYLGEKVEKAVITVPAYFNDARPGQPRMPAASLGLEVLRIINEPTAAALAYG 180

[Close]

BLAST of Csa4G418550 vs. TrEMBL
Match: A0A0A0L233_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G418550 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 4.4e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 1  MSSLLCMSEQKFLNDRVGKSVVTVPAYFNLSKDGDERYWSDCCLEILRIINEPTAASLAY 60
          MSSLLCMSEQKFLNDRVGKSVVTVPAYFNLSKDGDERYWSDCCLEILRIINEPTAASLAY
Sbjct: 1  MSSLLCMSEQKFLNDRVGKSVVTVPAYFNLSKDGDERYWSDCCLEILRIINEPTAASLAY 60

Query: 61 G 62
          G
Sbjct: 61 G 61

[Close]

BLAST of Csa4G418550 vs. TrEMBL
Match: A0A0A0K6G7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G312930 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-07
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 1


Query: 11  KFLNDRVGKSVVTVPAYFNLS-KDGDERYWSDCCLEILRIINEPTAASLAYG 62
           KFLND+VGK+VVTVPAYFN S +   +       LE+LRIINEPTAASLAYG
Sbjct: 170 KFLNDQVGKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 221

[Close]

BLAST of Csa4G418550 vs. TrEMBL
Match: A0A166DYD2_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_006667 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.0e-07
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 1


Query: 11  KFLNDRVGKSVVTVPAYFNLS-KDGDERYWSDCCLEILRIINEPTAASLAYG 62
           KFLND+V K+VVTVPAYFN S +   +       LE+LRIINEPTAASLAYG
Sbjct: 190 KFLNDKVSKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 241

[Close]

BLAST of Csa4G418550 vs. TrEMBL
Match: A0A0V0IS54_SOLCH (Putative stromal 70 kDa heat shock-related protein, chloroplastic-like OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.0e-07
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 1


Query: 11  KFLNDRVGKSVVTVPAYFNLS-KDGDERYWSDCCLEILRIINEPTAASLAYG 62
           KFLND+V K+VVTVPAYFN S +   +       LE+LRIINEPTAASLAYG
Sbjct: 195 KFLNDKVSKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 246

[Close]

BLAST of Csa4G418550 vs. TrEMBL
Match: K4B1S1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.0e-07
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 1


Query: 11  KFLNDRVGKSVVTVPAYFNLS-KDGDERYWSDCCLEILRIINEPTAASLAYG 62
           KFLND+V K+VVTVPAYFN S +   +       LE+LRIINEPTAASLAYG
Sbjct: 192 KFLNDKVSKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 243

[Close]

BLAST of Csa4G418550 vs. TAIR10
Match: AT4G24280.1 (AT4G24280.1 chloroplast heat shock protein 70-1)

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-09
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 1


Query: 11  KFLNDRVGKSVVTVPAYFNLS-KDGDERYWSDCCLEILRIINEPTAASLAYG 62
           +FLND+V K+V+TVPAYFN S +   +       LE+LRIINEPTAASLAYG
Sbjct: 205 RFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 256

[Close]

BLAST of Csa4G418550 vs. TAIR10
Match: AT5G49910.1 (AT5G49910.1 chloroplast heat shock protein 70-2)

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-09
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 1


Query: 11  KFLNDRVGKSVVTVPAYFNLS-KDGDERYWSDCCLEILRIINEPTAASLAYG 62
           +FLND+V K+V+TVPAYFN S +   +       LE+LRIINEPTAASLAYG
Sbjct: 205 RFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 256

[Close]

BLAST of Csa4G418550 vs. TAIR10
Match: AT5G02490.1 (AT5G02490.1 Heat shock protein 70 (Hsp 70) family protein)

HSP 1 Score: 47.4 bits (111), Expect = 3.8e-06
Identity = 28/56 (50.00%), Postives = 32/56 (57.14%), Query Frame = 1


Query: 10  QKFLNDRVGKSVVTVPAYFNLSKDGDERYWSDCC----LEILRIINEPTAASLAYG 62
           + FL   V  +VVTVPAYFN   D   +   D      L +LRIINEPTAA++AYG
Sbjct: 136 EAFLGTTVKNAVVTVPAYFN---DSQRQATKDAGVIAGLNVLRIINEPTAAAIAYG 188

[Close]

BLAST of Csa4G418550 vs. TAIR10
Match: AT1G16030.1 (AT1G16030.1 heat shock protein 70B)

HSP 1 Score: 47.4 bits (111), Expect = 3.8e-06
Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 1


Query: 10  QKFLNDRVGKSVVTVPAYFNLS-KDGDERYWSDCCLEILRIINEPTAASLAYG 62
           + FL   V  +VVTVPAYFN S +   +   +   L +LRIINEPTAA++AYG
Sbjct: 135 EAFLGRTVKNAVVTVPAYFNDSQRQATKDAGAISGLNVLRIINEPTAAAIAYG 187

[Close]

BLAST of Csa4G418550 vs. TAIR10
Match: AT3G12580.1 (AT3G12580.1 heat shock protein 70)

HSP 1 Score: 46.6 bits (109), Expect = 6.5e-06
Identity = 27/56 (48.21%), Postives = 32/56 (57.14%), Query Frame = 1


Query: 10  QKFLNDRVGKSVVTVPAYFNLSKDGDERYWSDCC----LEILRIINEPTAASLAYG 62
           + FL   V  +VVTVPAYFN   D   +   D      L ++RIINEPTAA++AYG
Sbjct: 136 EAFLGSPVKNAVVTVPAYFN---DSQRQATKDAGVISGLNVMRIINEPTAAAIAYG 188

[Close]

BLAST of Csa4G418550 vs. NCBI nr
Match: gi|700199504|gb|KGN54662.1| (hypothetical protein Csa_4G418550 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 6.3e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 1  MSSLLCMSEQKFLNDRVGKSVVTVPAYFNLSKDGDERYWSDCCLEILRIINEPTAASLAY 60
          MSSLLCMSEQKFLNDRVGKSVVTVPAYFNLSKDGDERYWSDCCLEILRIINEPTAASLAY
Sbjct: 1  MSSLLCMSEQKFLNDRVGKSVVTVPAYFNLSKDGDERYWSDCCLEILRIINEPTAASLAY 60

Query: 61 G 62
          G
Sbjct: 61 G 61

[Close]

BLAST of Csa4G418550 vs. NCBI nr
Match: gi|778726574|ref|XP_004139746.2| (PREDICTED: LOW QUALITY PROTEIN: stromal 70 kDa heat shock-related protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-07
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 1


Query: 11  KFLNDRVGKSVVTVPAYFNLS-KDGDERYWSDCCLEILRIINEPTAASLAYG 62
           KFLND+VGK+VVTVPAYFN S +   +       LE+LRIINEPTAASLAYG
Sbjct: 170 KFLNDQVGKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 221

[Close]

BLAST of Csa4G418550 vs. NCBI nr
Match: gi|659123960|ref|XP_008461924.1| (PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic-like [Cucumis melo])

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-07
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 1


Query: 11  KFLNDRVGKSVVTVPAYFNLS-KDGDERYWSDCCLEILRIINEPTAASLAYG 62
           KFLND+VGK+VVTVPAYFN S +   +       LE+LRIINEPTAASLAYG
Sbjct: 170 KFLNDQVGKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 221

[Close]

BLAST of Csa4G418550 vs. NCBI nr
Match: gi|700189256|gb|KGN44489.1| (hypothetical protein Csa_7G312930 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-07
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 1


Query: 11  KFLNDRVGKSVVTVPAYFNLS-KDGDERYWSDCCLEILRIINEPTAASLAYG 62
           KFLND+VGK+VVTVPAYFN S +   +       LE+LRIINEPTAASLAYG
Sbjct: 170 KFLNDQVGKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 221

[Close]

BLAST of Csa4G418550 vs. NCBI nr
Match: gi|658051883|ref|XP_008361671.1| (PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic-like [Malus domestica])

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-07
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 1


Query: 11  KFLNDRVGKSVVTVPAYFNLS-KDGDERYWSDCCLEILRIINEPTAASLAYG 62
           KFLND+VGK+V+TVPAYFN S +   +       LE+LRIINEPTAASLAYG
Sbjct: 182 KFLNDKVGKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 233

The following BLAST results are available for this feature:

BLAST of Csa4G418550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HSP7S_PEA	7.7e-09	65.38	Stromal 70 kDa heat shock-related protein, chloroplastic OS=Pisum sativum GN=HSP...	[more]
HSP7S_SPIOL	7.7e-09	65.38	Stromal 70 kDa heat shock-related protein, chloroplastic (Fragment) OS=Spinacia ...	[more]
HSP7G_ARATH	2.2e-08	61.54	Heat shock 70 kDa protein 7, chloroplastic OS=Arabidopsis thaliana GN=HSP70-7 PE...	[more]
HSP7F_ARATH	2.2e-08	61.54	Heat shock 70 kDa protein 6, chloroplastic OS=Arabidopsis thaliana GN=HSP70-6 PE...	[more]
DNAK_RHILE	5.0e-08	54.72	Chaperone protein DnaK OS=Rhizobium leguminosarum GN=dnaK PE=3 SV=1	[more]

BLAST of Csa4G418550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L233_CUCSA	4.4e-27	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G418550 PE=4 SV=1	[more]
A0A0A0K6G7_CUCSA	1.3e-07	67.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G312930 PE=3 SV=1	[more]
A0A166DYD2_DAUCA	5.0e-07	65.38	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_006667 PE=4 SV=1	[more]
A0A0V0IS54_SOLCH	5.0e-07	65.38	Putative stromal 70 kDa heat shock-related protein, chloroplastic-like OS=Solanu...	[more]
K4B1S1_SOLLC	5.0e-07	65.38	Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1	[more]

BLAST of Csa4G418550 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G24280.1	1.3e-09	61.54	chloroplast heat shock protein 70-1	[more]
AT5G49910.1	1.3e-09	61.54	chloroplast heat shock protein 70-2	[more]
AT5G02490.1	3.8e-06	50.00	Heat shock protein 70 (Hsp 70) family protein	[more]
AT1G16030.1	3.8e-06	50.94	heat shock protein 70B	[more]
AT3G12580.1	6.5e-06	48.21	heat shock protein 70	[more]

BLAST of Csa4G418550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199504\|gb\|KGN54662.1\|	6.3e-27	100.00	hypothetical protein Csa_4G418550 [Cucumis sativus]	[more]
gi\|778726574\|ref\|XP_004139746.2\|	1.9e-07	67.31	PREDICTED: LOW QUALITY PROTEIN: stromal 70 kDa heat shock-related protein, chlor...	[more]
gi\|659123960\|ref\|XP_008461924.1\|	1.9e-07	67.31	PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic-like [Cucumi...	[more]
gi\|700189256\|gb\|KGN44489.1\|	1.9e-07	67.31	hypothetical protein Csa_7G312930 [Cucumis sativus]	[more]
gi\|658051883\|ref\|XP_008361671.1\|	1.9e-07	65.38	PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic-like [Malus ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013126	Hsp_70_fam

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000166	nucleotide binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU109063	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G418550.1	Csa4G418550.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU109063	CU109063	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013126	Heat shock protein 70 family	PFAM	PF00012	HSP70	coord: 10..61 score: 1.1
None	No IPR available	GENE3D	G3DSA:3.30.420.40		coord: 10..61 score: 3.
None	No IPR available	PANTHER	PTHR19375	HEAT SHOCK PROTEIN 70KDA	coord: 11..61 score: 7.1
None	No IPR available	PANTHER	PTHR19375:SF211	SUBFAMILY NOT NAMED	coord: 11..61 score: 7.1
None	No IPR available	unknown	SSF53067	Actin-like ATPase domain	coord: 10..61 score: 5.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G418550	Cucumber (Gy14) v1	cgycuB502
Csa4G418550	Cucurbita maxima (Rimu)	cmacuB669
Csa4G418550	Cucurbita maxima (Rimu)	cmacuB867
Csa4G418550	Cucurbita moschata (Rifu)	cmocuB659
Csa4G418550	Cucurbita moschata (Rifu)	cmocuB855
Csa4G418550	Melon (DHL92) v3.5.1	cumeB272
Csa4G418550	Watermelon (Charleston Gray)	cuwcgB304
Csa4G418550	Watermelon (97103) v1	cuwmB340
Csa4G418550	Cucurbita pepo (Zucchini)	cpecuB072
Csa4G418550	Cucurbita pepo (Zucchini)	cpecuB487
Csa4G418550	Bottle gourd (USVL1VR-Ls)	culsiB249
Csa4G418550	Cucumber (Gy14) v2	cgybcuB167
Csa4G418550	Melon (DHL92) v3.6.1	cumedB320
Csa4G418550	Silver-seed gourd	carcuB0609
Csa4G418550	Silver-seed gourd	carcuB0980
Csa4G418550	Watermelon (97103) v2	cuwmbB300
Csa4G418550	Wax gourd	cuwgoB408