Csa4G418520 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G418520
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein; contains IPR005516 (Remorin, C-terminal)
Location	Chr4 : 15716427 .. 15717071 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACGCATTGGGTCATGGGAGAACAACAAGAAAGCAGCTCTTGAGGCTGAACTAAAACAAATTGAGGTAATTAGAAAACAAAATATATGTAATGTGTTTAAGTTTTATTTGTATAGTATGTAGATGCTATTTACGATTTTAGTTCTAGATTTTAGAAAAATTCATTGAATATAAACTCACAACCTCAGAGGAAATTCCAAAATCTGTAATTCGATATTTCTCTTCATTGACGGAACTGCTCTTTACAACTATGTTTTTTTTTTCTTTTTTGTCGATTTCATTTGGATTTATTTTGTAACGAGAGCATGAAAATTTTGAGAAGAAGAAGGGAGAGTATATTGAGAAAATGAAGAATAAAATAACATTGATACACAAAACAACATAAGAAAATAAGGTTGTTAATTGAAGCAAAGCATGGAGAAGAAAAGTTGAAGGCAGAGGCAGATGAAATTGCTGCCAAACACAGAGCTATCGGTTCCAATTTGAAGGAACGAGGTATTTAGGTACTTTAGAACCTCGACTACCTTCAAGTAGATTGTACATTGTAAGTAAATCATAGTAAGGTATCCATCAACAATATTCATCCCAATCACTAAAGTCCGATTACATGATGAAAATGTGATTCAGCCTTCAGATGTATGA

mRNA sequence

ATGGAACGCATTGGGTCATGGGAGAACAACAAGAAAGCAGCTCTTGAGGCTGAACTAAAACAAATTGAGCATGGAGAAGAAAAGTTGAAGGCAGAGGCAGATGAAATTGCTGCCAAACACAGAGCTATCGGTTCCAATTTGAAGGAACGAGTCCGATTACATGATGAAAATGTGATTCAGCCTTCAGATGTATGA

Coding sequence (CDS)

ATGGAACGCATTGGGTCATGGGAGAACAACAAGAAAGCAGCTCTTGAGGCTGAACTAAAACAAATTGAGCATGGAGAAGAAAAGTTGAAGGCAGAGGCAGATGAAATTGCTGCCAAACACAGAGCTATCGGTTCCAATTTGAAGGAACGAGTCCGATTACATGATGAAAATGTGATTCAGCCTTCAGATGTATGA

Protein sequence

MERIGSWENNKKAALEAELKQIEHGEEKLKAEADEIAAKHRAIGSNLKERVRLHDENVIQPSDV*

Homology

[Close]

BLAST of Csa4G418520 vs. TrEMBL
Match: A0A0A0L0S7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G418520 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.1e-27
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1  MERIGSWENNKKAALEAELKQIEHGEEKLKAEADEIAAKHRAIGSNLKERVRLHDENVIQ 60
          MERIGSWENNKKAALEAELKQIEHGEEKLKAEADEIAAKHRAIGSNLKERVRLHDENVIQ
Sbjct: 1  MERIGSWENNKKAALEAELKQIEHGEEKLKAEADEIAAKHRAIGSNLKERVRLHDENVIQ 60

Query: 61 PSDV 65
          PSDV
Sbjct: 61 PSDV 64

[Close]

BLAST of Csa4G418520 vs. TAIR10
Match: AT5G23750.1 (AT5G23750.1 Remorin family protein)

HSP 1 Score: 46.6 bits (109), Expect = 6.8e-06
Identity = 22/32 (68.75%), Postives = 24/32 (75.00%), Query Frame = 1


Query: 1   MERIGSWENNKKAALEAELKQIEHGEEKLKAE 33
           +  IGSWENNKKAA+EAELK++E   EK KAE
Sbjct: 116 LSSIGSWENNKKAAVEAELKKMEEQLEKKKAE 147

[Close]

BLAST of Csa4G418520 vs. NCBI nr
Match: gi|700199501|gb|KGN54659.1| (hypothetical protein Csa_4G418520 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 3.0e-27
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1  MERIGSWENNKKAALEAELKQIEHGEEKLKAEADEIAAKHRAIGSNLKERVRLHDENVIQ 60
          MERIGSWENNKKAALEAELKQIEHGEEKLKAEADEIAAKHRAIGSNLKERVRLHDENVIQ
Sbjct: 1  MERIGSWENNKKAALEAELKQIEHGEEKLKAEADEIAAKHRAIGSNLKERVRLHDENVIQ 60

Query: 61 PSDV 65
          PSDV
Sbjct: 61 PSDV 64

The following BLAST results are available for this feature:

BLAST of Csa4G418520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0S7_CUCSA	2.1e-27	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G418520 PE=4 SV=1	[more]

BLAST of Csa4G418520 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G23750.1	6.8e-06	68.75	Remorin family protein	[more]

BLAST of Csa4G418520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199501\|gb\|KGN54659.1\|	3.0e-27	100.00	hypothetical protein Csa_4G418520 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005516	Remorin_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G418520.1	Csa4G418520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005516	Remorin, C-terminal	PFAM	PF03763	Remorin_C	coord: 2..37 score: 2.
None	No IPR available	unknown	Coil	Coil	coord: 12..39 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G418520	Cucurbita maxima (Rimu)	cmacuB669
Csa4G418520	Cucurbita maxima (Rimu)	cmacuB867
Csa4G418520	Cucurbita moschata (Rifu)	cmocuB659
Csa4G418520	Cucurbita moschata (Rifu)	cmocuB855
Csa4G418520	Melon (DHL92) v3.5.1	cumeB272
Csa4G418520	Watermelon (Charleston Gray)	cuwcgB304
Csa4G418520	Watermelon (97103) v1	cuwmB340
Csa4G418520	Cucurbita pepo (Zucchini)	cpecuB072
Csa4G418520	Cucurbita pepo (Zucchini)	cpecuB487
Csa4G418520	Bottle gourd (USVL1VR-Ls)	culsiB249
Csa4G418520	Cucumber (Gy14) v2	cgybcuB167
Csa4G418520	Melon (DHL92) v3.6.1	cumedB320
Csa4G418520	Silver-seed gourd	carcuB0609
Csa4G418520	Silver-seed gourd	carcuB0980
Csa4G418520	Watermelon (97103) v2	cuwmbB300
Csa4G418520	Wax gourd	cuwgoB408