Csa4G377170 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G377170
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionDimethyladenosine transferase; contains IPR001737 (Ribosomal RNA adenine methylase transferase)
LocationChr4 : 15079083 .. 15080118 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCAACAACAATGGCAGGAGGCAAAATGGAAAAGGAGAAGGCAAATGCAGGGGCGAAGAATGCAACACCATTTCAAGGAGGGATTTCATTCCATAAATCCAAAGGCGAGCATATTCTCAAGAATCCCTTGCTTGTTGACTACATTTCAAATGTCTGGAACTAAGAGCACCGATGTGATGCTCGAGATCGGTCTCGGTACTGGTAATCTCACAAAAAAGCTTTTAGAATGTGGCAAGATGGTTATTGCTGTCCGAATCGATCTTCAGACGGTTCTTGAGTTGTAGAGGCAGTTTAAGAACATCTTACTCTTCTCGCTTTAATTAAGGCAGATTCATTAATTGGTTATTTCTCATCAGATGTGTGGTTGTGCTTGTTTAATTATGAATTTGAGTTTGTTGAACTTGAATAATAATTGACTAGTTCTTCAACTTGATGTGCTCAGTTTATTCAAGGAGATGTACAAGACTGAGCTTCCTTATTTGGATATATGTGTAGCAAATATTCCTTATCAGATATCATCTCCTCTAACATTCAAATTGCTAAATCATCAACCTTCTTTTCCAAGCGCCATTATAATGTTCCATAGATGGGGCGATTCAGGTCAACCTGGTGACAAAATTCATTGTCGTTTAACTGTTAACACCCAACCCCTAGCTCTGAGTGTCACACCTCCTCAAAGTTGGGAAGAACAACTTTTGTCCTCTTCCTAAGGTGGACTCATCTGTTGAGCCAATGGAACCACGTATTGAAGTGAAGCAGAAGGAGTGGGATGGATTTTTGATAATCTGTTCAATCCAAGAGAACAAAACTTTTTGTTCGATTATTAGGCAGAAAAGTGCCATTTCTTTGCTAGAGAAGAAGTACAAAACATTTTGTGCACTTAATGTTCTTCAACAAGATTTTGCAGATAACGATGATGGTGATTTTGATTATTCGAGATTTGACGATTCAAACGAGGATCAAACCATGAAGTCGATGGTGATGGAGATGACAGAGGATCAAAATTCCCTTAAACTTTACTCATGGGCTTAG

mRNA sequence

ATGTTTCAACAACAATGGCAGGAGGCAAAATGGAAAAGGAGAAGGCAAATGCAGGGGCGAAGAATGCAACACCATTTCAAGGAGGGATTTCATTCCATAAATCCAAAGGCGAGCATATTCTCAAGAATCCCTTGCTTGTTGACTACATTTCAAATGTCTGGAACTAAGAGCACCGATGTGATGCTCGAGATCGGTCTCGGTACTGGTAATCTCACAAAAAAGCTTTTAGAATGTGGCAAGATGGTTATTGCTGTCCGAATCGATCTTCAGACGGTTCTTGAGTTTTTATTCAAGGAGATGTACAAGACTGAGCTTCCTTATTTGGATATATGTGTAGCAAATATTCCTTATCAGATATCATCTCCTCTAACATTCAAATTGCTAAATCATCAACCTTCTTTTCCAAGCGCCATTATAATGTTCCATAGATGGGGCGATTCAGGTCAACCTGGTGACAAAATTCATTGTCGTTTAACTGTGGACTCATCTGTTGAGCCAATGGAACCACGTATTGAAGTGAAGCAGAAGGAGTGGGATGGATTTTTGATAATCTGTTCAATCCAAGAGAACAAAACTTTTTGTTCGATTATTAGGCAGAAAAGTGCCATTTCTTTGCTAGAGAAGAAGTACAAAACATTTTGTGCACTTAATGTTCTTCAACAAGATTTTGCAGATAACGATGATGGTGATTTTGATTATTCGAGATTTGACGATTCAAACGAGGATCAAACCATGAAGTCGATGGTGATGGAGATGACAGAGGATCAAAATTCCCTTAAACTTTACTCATGGGCTTAG

Coding sequence (CDS)

ATGTTTCAACAACAATGGCAGGAGGCAAAATGGAAAAGGAGAAGGCAAATGCAGGGGCGAAGAATGCAACACCATTTCAAGGAGGGATTTCATTCCATAAATCCAAAGGCGAGCATATTCTCAAGAATCCCTTGCTTGTTGACTACATTTCAAATGTCTGGAACTAAGAGCACCGATGTGATGCTCGAGATCGGTCTCGGTACTGGTAATCTCACAAAAAAGCTTTTAGAATGTGGCAAGATGGTTATTGCTGTCCGAATCGATCTTCAGACGGTTCTTGAGTTTTTATTCAAGGAGATGTACAAGACTGAGCTTCCTTATTTGGATATATGTGTAGCAAATATTCCTTATCAGATATCATCTCCTCTAACATTCAAATTGCTAAATCATCAACCTTCTTTTCCAAGCGCCATTATAATGTTCCATAGATGGGGCGATTCAGGTCAACCTGGTGACAAAATTCATTGTCGTTTAACTGTGGACTCATCTGTTGAGCCAATGGAACCACGTATTGAAGTGAAGCAGAAGGAGTGGGATGGATTTTTGATAATCTGTTCAATCCAAGAGAACAAAACTTTTTGTTCGATTATTAGGCAGAAAAGTGCCATTTCTTTGCTAGAGAAGAAGTACAAAACATTTTGTGCACTTAATGTTCTTCAACAAGATTTTGCAGATAACGATGATGGTGATTTTGATTATTCGAGATTTGACGATTCAAACGAGGATCAAACCATGAAGTCGATGGTGATGGAGATGACAGAGGATCAAAATTCCCTTAAACTTTACTCATGGGCTTAG

Protein sequence

MFQQQWQEAKWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTFQMSGTKSTDVMLEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEFLFKEMYKTELPYLDICVANIPYQISSPLTFKLLNHQPSFPSAIIMFHRWGDSGQPGDKIHCRLTVDSSVEPMEPRIEVKQKEWDGFLIICSIQENKTFCSIIRQKSAISLLEKKYKTFCALNVLQQDFADNDDGDFDYSRFDDSNEDQTMKSMVMEMTEDQNSLKLYSWA*
Homology
[Close]
BLAST of Csa4G377170 vs. Swiss-Prot
Match: DIM1A_ARATH (Ribosomal RNA small subunit methyltransferase OS=Arabidopsis thaliana GN=DIM1A PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.9e-44
Identity = 124/299 (41.47%), Postives = 155/299 (51.84%), Query Frame = 1 

Query: 12  KRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTF-QMSGTKSTDVMLEIGLGTGN 71
           K + +   R   +H++ G      K     + P L+ +  Q +G KSTDV+LEIG GTGN
Sbjct: 8   KEKPKASNRAPSNHYQGGISFHKSKGQHILKNPLLVDSIVQKAGIKSTDVILEIGPGTGN 67

Query: 72  LTKKLLECGKMVIAVRIDLQTVLEFLFK---------------EMYKTELPYLDICVANI 131
           LTKKLLE GK VIAV +D + VLE   +               ++ KTELP  DICVANI
Sbjct: 68  LTKKLLEAGKEVIAVELDSRMVLELQRRFQGTPFSNRLKVIQGDVLKTELPRFDICVANI 127

Query: 132 PYQISSPLTFKLLNHQPSFPSAIIMFHRWGDS---GQPGDKIHCRLTV------------ 191
           PYQISSPLTFKLL H  SF  A+IM+ R        QPGD ++CRL+V            
Sbjct: 128 PYQISSPLTFKLLFHPTSFRCAVIMYQREFAMRLVAQPGDNLYCRLSVNTQLYARVSHLL 187

Query: 192 -------------DSSV---EPMEPRIEVKQKEWDGFLIICSIQENKTFCSIIRQKSAIS 251
                        DSSV   EP  P  +V +KEWDGFL +C I++NKT  SI +QKS +S
Sbjct: 188 KVGKNNFRPPPKVDSSVVRIEPRRPGPQVNKKEWDGFLRVCFIRKNKTLGSIFKQKSVLS 247

Query: 252 LLEKKYKTFCALNVLQQDFAD-------NDDGDFDYSRFDDSNEDQTMKSMVMEMTEDQ 257
           +LEK +KT  A+    Q+  +        D GD      DD NE   M    MEM E +
Sbjct: 248 MLEKNFKTLQAVLASLQNNGEPALNTTSMDLGDQSMGMEDDDNE---MDDDDMEMDEGE 303

[Close]
BLAST of Csa4G377170 vs. Swiss-Prot
Match: DIM1_DICDI (Probable dimethyladenosine transferase OS=Dictyostelium discoideum GN=dimt1 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.0e-33
Identity = 87/253 (34.39%), Postives = 123/253 (48.62%), Query Frame = 1 

Query: 53  SGTKSTDVMLEIGLGTGNLTKKLLECGKMVIAVRIDLQTV---------------LEFLF 112
           S  KSTD +LEIG GTGNLT KLLE  K VIA+ +D +                 L+ + 
Sbjct: 51  SQLKSTDTVLEIGPGTGNLTMKLLENCKKVIAIEVDPRMAAELQKRVAASPYAQHLQIIL 110

Query: 113 KEMYKTELPYLDICVANIPYQISSPLTFKLLNHQPSFPSAIIMFHRWGD---SGQPGDKI 172
            +  K +LPY D+CVAN+PYQISSPLTFKLL H+P F +A++MF +        +PGD +
Sbjct: 111 GDFLKVDLPYFDVCVANVPYQISSPLTFKLLAHRPIFRTAVLMFQKEFALRLGAKPGDSL 170

Query: 173 HCRLTVDSS----------------------------VEPMEPRIEVKQKEWDGFLIICS 232
           +CRL+V++                             +EP  P   +   EWDG + +C 
Sbjct: 171 YCRLSVNTQLLSKVTHLMKVGKNNFLPPPKVESAVVRIEPFNPPPPINFVEWDGLVKLCF 230

Query: 233 IQENKTFCSIIRQKSAISLLEKKYKTFCALNVLQQDFADNDDGDFDYSRFDDSNEDQTMK 260
            ++NKT   I R  S I  L + YKT+CAL                  + +    D+ MK
Sbjct: 231 SRKNKTLSGIFRVSSVIETLNQNYKTYCALE----------------GKMNTDGSDEQMK 287

[Close]
BLAST of Csa4G377170 vs. Swiss-Prot
Match: DIM1_DROME (Probable dimethyladenosine transferase OS=Drosophila melanogaster GN=CG11837 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.7e-31
Identity = 87/233 (37.34%), Postives = 120/233 (51.50%), Query Frame = 1 

Query: 44  PCLLTTF-QMSGTKSTDVMLEIGLGTGNLTKKLLECGKMVIAVRID-------------- 103
           P ++TT  + +  ++TDV+LEIG GTGN+T ++LE  K VIA  ID              
Sbjct: 35  PLVITTMLEKAALRATDVVLEIGPGTGNMTVRMLERAKKVIACEIDTRLAAELQKRVQAT 94

Query: 104 -LQTVLEFLFKEMYKTELPYLDICVANIPYQISSPLTFKLLNHQPSFPSAIIMFHRWGDS 163
            LQ  L+ L  +  K ELP+ D+C+AN+PYQISSPL FKLL H+P F  A++MF R    
Sbjct: 95  PLQPKLQVLIGDFLKAELPFFDLCIANVPYQISSPLIFKLLLHRPLFRCAVLMFQREFAE 154

Query: 164 ---GQPGDKIHCRLT-------------------------VDSSV---EPMEPRIEVKQK 223
               +PGDK++CRL+                         V+SSV   EP  P   V   
Sbjct: 155 RLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFRPPPKVESSVVRLEPKNPPPPVNFT 214

Query: 224 EWDGFLIICSIQENKTFCSIIRQKSAISLLEKKYKTFCAL--NVLQQDFADND 228
           EWDG   I  +++NKT  +  +  S + +LEK YK + +L    ++ DF   D
Sbjct: 215 EWDGLTRIAFLRKNKTLAATFKVTSVLEMLEKNYKLYRSLRNEPIEDDFKMQD 267

[Close]
BLAST of Csa4G377170 vs. Swiss-Prot
Match: DIM1_HUMAN (Probable dimethyladenosine transferase OS=Homo sapiens GN=DIMT1 PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-29
Identity = 77/220 (35.00%), Postives = 115/220 (52.27%), Query Frame = 1 

Query: 56  KSTDVMLEIGLGTGNLTKKLLECGKMVIAVRIDLQTV---------------LEFLFKEM 115
           + TDV+LE+G GTGN+T KLLE  K V+A  +D + V               L+ L  ++
Sbjct: 55  RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDV 114

Query: 116 YKTELPYLDICVANIPYQISSPLTFKLLNHQPSFPSAIIMFHRWGDS---GQPGDKIHCR 175
            KT+LP+ D CVAN+PYQISSP  FKLL H+P F  AI+MF R        +PGDK++CR
Sbjct: 115 LKTDLPFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLYCR 174

Query: 176 LTVDSS----------------------------VEPMEPRIEVKQKEWDGFLIICSIQE 228
           L++++                             +EP  P   +  +EWDG + I  +++
Sbjct: 175 LSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRK 234

[Close]
BLAST of Csa4G377170 vs. Swiss-Prot
Match: DIM1_MACFA (Probable dimethyladenosine transferase OS=Macaca fascicularis GN=DIMT1 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-29
Identity = 77/220 (35.00%), Postives = 115/220 (52.27%), Query Frame = 1 

Query: 56  KSTDVMLEIGLGTGNLTKKLLECGKMVIAVRIDLQTV---------------LEFLFKEM 115
           + TDV+LE+G GTGN+T KLLE  K V+A  +D + V               L+ L  ++
Sbjct: 55  RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELRKRVQGTPVASKLQVLVGDV 114

Query: 116 YKTELPYLDICVANIPYQISSPLTFKLLNHQPSFPSAIIMFHR---WGDSGQPGDKIHCR 175
            KT+LP+ D CVAN+PYQISSP  FKLL H+P F  AI+MF R        +PGDK++CR
Sbjct: 115 LKTDLPFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQRELALRLVAKPGDKLYCR 174

Query: 176 LTVDSS----------------------------VEPMEPRIEVKQKEWDGFLIICSIQE 228
           L++++                             +EP  P   +  +EWDG + I  +++
Sbjct: 175 LSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRK 234

[Close]
BLAST of Csa4G377170 vs. TrEMBL
Match: A0A0A0KYM8_CUCSA (rRNA adenine N(6)-methyltransferase OS=Cucumis sativus GN=Csa_4G377170 PE=3 SV=1)

HSP 1 Score: 545.8 bits (1405), Expect = 2.9e-152
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 1 

Query: 1   MFQQQWQEAKWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTFQMSGTKSTDV 60
           MFQQQWQEAKWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTFQMSGTKSTDV
Sbjct: 1   MFQQQWQEAKWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTFQMSGTKSTDV 60

Query: 61  MLEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEFLFKEMYKTELPYLDICVANIPYQIS 120
           MLEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEFLFKEMYKTELPYLDICVANIPYQIS
Sbjct: 61  MLEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEFLFKEMYKTELPYLDICVANIPYQIS 120

Query: 121 SPLTFKLLNHQPSFPSAIIMFHRWGDSGQPGDKIHCRLTVDSSVEPMEPRIEVKQKEWDG 180
           SPLTFKLLNHQPSFPSAIIMFHRWGDSGQPGDKIHCRLTVDSSVEPMEPRIEVKQKEWDG
Sbjct: 121 SPLTFKLLNHQPSFPSAIIMFHRWGDSGQPGDKIHCRLTVDSSVEPMEPRIEVKQKEWDG 180

Query: 181 FLIICSIQENKTFCSIIRQKSAISLLEKKYKTFCALNVLQQDFADNDDGDFDYSRFDDSN 240
           FLIICSIQENKTFCSIIRQKSAISLLEKKYKTFCALNVLQQDFADNDDGDFDYSRFDDSN
Sbjct: 181 FLIICSIQENKTFCSIIRQKSAISLLEKKYKTFCALNVLQQDFADNDDGDFDYSRFDDSN 240

Query: 241 EDQTMKSMVMEMTEDQNSLKLYSWA 266
           EDQTMKSMVMEMTEDQNSLKLYSWA
Sbjct: 241 EDQTMKSMVMEMTEDQNSLKLYSWA 265

[Close]
BLAST of Csa4G377170 vs. TrEMBL
Match: A0A0A0LY97_CUCSA (rRNA adenine N(6)-methyltransferase OS=Cucumis sativus GN=Csa_1G679560 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.4e-58
Identity = 138/242 (57.02%), Postives = 155/242 (64.05%), Query Frame = 1 

Query: 51  QMSGTKSTDVMLEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEFLFK------------ 110
           Q SG KSTDV+LEIG GTGNLTKKLLECGKMVIAV +D + VLE   +            
Sbjct: 47  QKSGIKSTDVILEIGPGTGNLTKKLLECGKMVIAVELDPRMVLELQRRFQDTPYSSRLKV 106

Query: 111 ---EMYKTELPYLDICVANIPYQISSPLTFKLLNHQPSFPSAIIMFHRWGDS---GQPGD 170
              ++ KTELPY DICVANIPYQISSPLTFKLLNHQP+F  AIIMF R        QPGD
Sbjct: 107 IQGDVLKTELPYFDICVANIPYQISSPLTFKLLNHQPAFRCAIIMFQREFAMRLVAQPGD 166

Query: 171 KIHCRLTV-------------------------DSSV---EPMEPRIEVKQKEWDGFLII 230
           K++CRLTV                         DSSV   EP +PRIEVKQKEWDGFL I
Sbjct: 167 KLYCRLTVNTQLLARVSHLLKVGKNNFRPPPKVDSSVVRIEPRKPRIEVKQKEWDGFLRI 226

Query: 231 CSIQENKTFCSIIRQKSAISLLEKKYKTFCALNVLQQDFADNDDGDFDYSRFDDSNEDQT 247
           C  ++NKT  SI RQKS +SLLEK YKT C+LN+LQQ    NDD   DY     SNEDQ+
Sbjct: 227 CFNRKNKTLGSIFRQKSVLSLLEKNYKTLCSLNILQQGSGGNDDSALDY-----SNEDQS 283

[Close]
BLAST of Csa4G377170 vs. TrEMBL
Match: W9QXZ8_9ROSA (rRNA adenine N(6)-methyltransferase OS=Morus notabilis GN=L484_009755 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 4.0e-53
Identity = 127/241 (52.70%), Postives = 149/241 (61.83%), Query Frame = 1 

Query: 51  QMSGTKSTDVMLEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEFLFK------------ 110
           Q +G K+TD +LEIG GTGNLTKKLLE GK VIAV +D + VLE   +            
Sbjct: 47  QKAGIKTTDTILEIGPGTGNLTKKLLEAGKAVIAVEVDPRMVLELQRRFQGTPLSNRLKV 106

Query: 111 ---EMYKTELPYLDICVANIPYQISSPLTFKLLNHQPSFPSAIIMFHRWGDS---GQPGD 170
              ++ KT+LPY DICVANIPYQISSPLTFKLLNHQPSF  AIIMF R        QPGD
Sbjct: 107 IKGDVLKTDLPYFDICVANIPYQISSPLTFKLLNHQPSFRCAIIMFQREFAMRLVAQPGD 166

Query: 171 KIHCRLTV-------------------------DSSV---EPMEPRIEVKQKEWDGFLII 230
           K++CRLTV                         DSSV   EP +PRIEVKQKEWDGFL I
Sbjct: 167 KVYCRLTVNTQLLARVSHLLKVGKNNFRSPPKVDSSVVRIEPRKPRIEVKQKEWDGFLRI 226

Query: 231 CSIQENKTFCSIIRQKSAISLLEKKYKTFCALNVLQQDFADNDDGDFDYSRFDDSNEDQT 246
           C  ++NKT  SI RQKS ++LLEK YKT  AL +  Q   +++D   D+SR  D+NED  
Sbjct: 227 CFNRKNKTLGSIFRQKSVVTLLEKNYKTVQALKLSGQGLMEDNDNKMDFSRLGDNNEDLN 286

[Close]
BLAST of Csa4G377170 vs. TrEMBL
Match: A0A0R0JNL1_SOYBN (rRNA adenine N(6)-methyltransferase OS=Glycine max GN=GLYMA_06G315500 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.3e-51
Identity = 141/307 (45.93%), Postives = 169/307 (55.05%), Query Frame = 1 

Query: 10  KWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTF-QMSGTKSTDVMLEIGLGT 69
           K K +   Q + M +     FH    K     + P L+ +  + +G KSTDV+LEIG GT
Sbjct: 8   KEKGKPHQQQKHMPYQGGISFHK--SKGQHILKNPLLVDSIVEKAGVKSTDVILEIGPGT 67

Query: 70  GNLTKKLLECGKMVIAVRIDLQTVLEFLFK---------------EMYKTELPYLDICVA 129
           GNLTKKLLE GK VIAV ID + VLE   +               ++ KTELPY DICVA
Sbjct: 68  GNLTKKLLEAGKKVIAVEIDPRMVLELQRRFQGTPHSNRLTVIQGDVLKTELPYFDICVA 127

Query: 130 NIPYQISSPLTFKLLNHQPSFPSAIIMFHRWGDS---GQPGDKIHCRLTV---------- 189
           NIPYQISSPLTFKLL H+P+F +AIIMF R        QPGDK++CRLTV          
Sbjct: 128 NIPYQISSPLTFKLLKHEPAFRAAIIMFQREFAMRLVAQPGDKLYCRLTVNTQLHARVFH 187

Query: 190 ---------------DSSV---EPMEPRIEVKQKEWDGFLIICSIQENKTFCSIIRQKSA 249
                          DSSV   EP +PRIEVKQKEWDGFL IC  ++NKT  SI RQKS 
Sbjct: 188 LLKVGRNNFRPPPKVDSSVVRIEPRKPRIEVKQKEWDGFLRICFNRKNKTLGSIFRQKSV 247

Query: 250 ISLLEKKYKTFCALNVLQQDFADNDDGDFDYSRF---------DDSNEDQTMKSMVMEMT 261
           ISLLEK Y+T  AL + Q+D     D   D+S F         DD  +D  M+    E  
Sbjct: 248 ISLLEKNYRTVRALELGQEDSLKEVDAKMDFSSFGDDRGMEMDDDGADDDEMEVEDGEAD 307

[Close]
BLAST of Csa4G377170 vs. TrEMBL
Match: I1LYL2_SOYBN (rRNA adenine N(6)-methyltransferase OS=Glycine max GN=GLYMA_06G315500 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.3e-51
Identity = 141/307 (45.93%), Postives = 169/307 (55.05%), Query Frame = 1 

Query: 10  KWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTF-QMSGTKSTDVMLEIGLGT 69
           K K +   Q + M +     FH    K     + P L+ +  + +G KSTDV+LEIG GT
Sbjct: 8   KEKGKPHQQQKHMPYQGGISFHK--SKGQHILKNPLLVDSIVEKAGVKSTDVILEIGPGT 67

Query: 70  GNLTKKLLECGKMVIAVRIDLQTVLEFLFK---------------EMYKTELPYLDICVA 129
           GNLTKKLLE GK VIAV ID + VLE   +               ++ KTELPY DICVA
Sbjct: 68  GNLTKKLLEAGKKVIAVEIDPRMVLELQRRFQGTPHSNRLTVIQGDVLKTELPYFDICVA 127

Query: 130 NIPYQISSPLTFKLLNHQPSFPSAIIMFHRWGDS---GQPGDKIHCRLTV---------- 189
           NIPYQISSPLTFKLL H+P+F +AIIMF R        QPGDK++CRLTV          
Sbjct: 128 NIPYQISSPLTFKLLKHEPAFRAAIIMFQREFAMRLVAQPGDKLYCRLTVNTQLHARVFH 187

Query: 190 ---------------DSSV---EPMEPRIEVKQKEWDGFLIICSIQENKTFCSIIRQKSA 249
                          DSSV   EP +PRIEVKQKEWDGFL IC  ++NKT  SI RQKS 
Sbjct: 188 LLKVGRNNFRPPPKVDSSVVRIEPRKPRIEVKQKEWDGFLRICFNRKNKTLGSIFRQKSV 247

Query: 250 ISLLEKKYKTFCALNVLQQDFADNDDGDFDYSRF---------DDSNEDQTMKSMVMEMT 261
           ISLLEK Y+T  AL + Q+D     D   D+S F         DD  +D  M+    E  
Sbjct: 248 ISLLEKNYRTVRALELGQEDSLKEVDAKMDFSSFGDDRGMEMDDDGADDDEMEVEDGEAD 307

[Close]
BLAST of Csa4G377170 vs. TAIR10
Match: AT2G47420.1 (AT2G47420.1 Ribosomal RNA adenine dimethylase family protein)

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-45
Identity = 124/299 (41.47%), Postives = 155/299 (51.84%), Query Frame = 1 

Query: 12  KRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTF-QMSGTKSTDVMLEIGLGTGN 71
           K + +   R   +H++ G      K     + P L+ +  Q +G KSTDV+LEIG GTGN
Sbjct: 8   KEKPKASNRAPSNHYQGGISFHKSKGQHILKNPLLVDSIVQKAGIKSTDVILEIGPGTGN 67

Query: 72  LTKKLLECGKMVIAVRIDLQTVLEFLFK---------------EMYKTELPYLDICVANI 131
           LTKKLLE GK VIAV +D + VLE   +               ++ KTELP  DICVANI
Sbjct: 68  LTKKLLEAGKEVIAVELDSRMVLELQRRFQGTPFSNRLKVIQGDVLKTELPRFDICVANI 127

Query: 132 PYQISSPLTFKLLNHQPSFPSAIIMFHRWGDS---GQPGDKIHCRLTV------------ 191
           PYQISSPLTFKLL H  SF  A+IM+ R        QPGD ++CRL+V            
Sbjct: 128 PYQISSPLTFKLLFHPTSFRCAVIMYQREFAMRLVAQPGDNLYCRLSVNTQLYARVSHLL 187

Query: 192 -------------DSSV---EPMEPRIEVKQKEWDGFLIICSIQENKTFCSIIRQKSAIS 251
                        DSSV   EP  P  +V +KEWDGFL +C I++NKT  SI +QKS +S
Sbjct: 188 KVGKNNFRPPPKVDSSVVRIEPRRPGPQVNKKEWDGFLRVCFIRKNKTLGSIFKQKSVLS 247

Query: 252 LLEKKYKTFCALNVLQQDFAD-------NDDGDFDYSRFDDSNEDQTMKSMVMEMTEDQ 257
           +LEK +KT  A+    Q+  +        D GD      DD NE   M    MEM E +
Sbjct: 248 MLEKNFKTLQAVLASLQNNGEPALNTTSMDLGDQSMGMEDDDNE---MDDDDMEMDEGE 303

[Close]
BLAST of Csa4G377170 vs. TAIR10
Match: AT5G66360.2 (AT5G66360.2 Ribosomal RNA adenine dimethylase family protein)

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-15
Identity = 50/127 (39.37%), Postives = 66/127 (51.97%), Query Frame = 1 

Query: 53  SGTKSTDVMLEIGLGTGNLTKKLLECGKMVIAVRIDLQTV---------------LEFLF 112
           S  + TD +LEIG GTGNLT KLLE  + V+AV +D + V               L  + 
Sbjct: 85  SDIRPTDTVLEIGPGTGNLTMKLLEAAQNVVAVELDKRMVEILRKRVSDHGFADKLTIIQ 144

Query: 113 KEMYKTELPYLDICVANIPYQISSPLTFKLLNHQPSFPSAIIMFHRWGDS---GQPGDKI 162
           K++ KT+ P+ D+ VANIPY ISSPL  KL+    +F SA ++  +         PGD  
Sbjct: 145 KDVLKTDFPHFDLVVANIPYNISSPLVAKLVYGSNTFRSATLLLQKEFSRRLLANPGDSD 204

[Close]
BLAST of Csa4G377170 vs. NCBI nr
Match: gi|700199445|gb|KGN54603.1| (hypothetical protein Csa_4G377170 [Cucumis sativus])

HSP 1 Score: 545.8 bits (1405), Expect = 4.1e-152
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 1 

Query: 1   MFQQQWQEAKWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTFQMSGTKSTDV 60
           MFQQQWQEAKWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTFQMSGTKSTDV
Sbjct: 1   MFQQQWQEAKWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTFQMSGTKSTDV 60

Query: 61  MLEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEFLFKEMYKTELPYLDICVANIPYQIS 120
           MLEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEFLFKEMYKTELPYLDICVANIPYQIS
Sbjct: 61  MLEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEFLFKEMYKTELPYLDICVANIPYQIS 120

Query: 121 SPLTFKLLNHQPSFPSAIIMFHRWGDSGQPGDKIHCRLTVDSSVEPMEPRIEVKQKEWDG 180
           SPLTFKLLNHQPSFPSAIIMFHRWGDSGQPGDKIHCRLTVDSSVEPMEPRIEVKQKEWDG
Sbjct: 121 SPLTFKLLNHQPSFPSAIIMFHRWGDSGQPGDKIHCRLTVDSSVEPMEPRIEVKQKEWDG 180

Query: 181 FLIICSIQENKTFCSIIRQKSAISLLEKKYKTFCALNVLQQDFADNDDGDFDYSRFDDSN 240
           FLIICSIQENKTFCSIIRQKSAISLLEKKYKTFCALNVLQQDFADNDDGDFDYSRFDDSN
Sbjct: 181 FLIICSIQENKTFCSIIRQKSAISLLEKKYKTFCALNVLQQDFADNDDGDFDYSRFDDSN 240

Query: 241 EDQTMKSMVMEMTEDQNSLKLYSWA 266
           EDQTMKSMVMEMTEDQNSLKLYSWA
Sbjct: 241 EDQTMKSMVMEMTEDQNSLKLYSWA 265

[Close]
BLAST of Csa4G377170 vs. NCBI nr
Match: gi|659086143|ref|XP_008443786.1| (PREDICTED: probable dimethyladenosine transferase [Cucumis melo])

HSP 1 Score: 240.4 bits (612), Expect = 3.7e-60
Identity = 147/284 (51.76%), Postives = 171/284 (60.21%), Query Frame = 1 

Query: 10  KWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTF-QMSGTKSTDVMLEIGLGT 69
           K KR +     +    ++ G      K     + P L+ +  Q SG KSTDV+LEIG GT
Sbjct: 5   KIKREKPKAAAKAATPYQGGISFHKSKGQHILKNPLLVDSIVQKSGIKSTDVILEIGPGT 64

Query: 70  GNLTKKLLECGKMVIAVRIDLQTVLEFLFK---------------EMYKTELPYLDICVA 129
           GNLTKKLLECGKMVIAV +D + VLE   +               ++ KTELPY DICVA
Sbjct: 65  GNLTKKLLECGKMVIAVELDPRMVLELQRRFQDTPYSSRLKVIQGDVLKTELPYFDICVA 124

Query: 130 NIPYQISSPLTFKLLNHQPSFPSAIIMFHRWGDS---GQPGDKIHCRLTV---------- 189
           NIPYQISSPLTFKLLNHQP+F  AIIMF R        QPGDK++CRLTV          
Sbjct: 125 NIPYQISSPLTFKLLNHQPAFRCAIIMFQREFAMRLVAQPGDKLYCRLTVNTQLLARVSH 184

Query: 190 ---------------DSSV---EPMEPRIEVKQKEWDGFLIICSIQENKTFCSIIRQKSA 247
                          DSSV   EP +PRIEVKQKEWDGFL IC  ++NKT  SI RQKS 
Sbjct: 185 LLKVGKNNFRPPPKVDSSVVRIEPRKPRIEVKQKEWDGFLRICFNRKNKTLGSIFRQKSV 244

[Close]
BLAST of Csa4G377170 vs. NCBI nr
Match: gi|449449575|ref|XP_004142540.1| (PREDICTED: probable dimethyladenosine transferase [Cucumis sativus])

HSP 1 Score: 234.6 bits (597), Expect = 2.0e-58
Identity = 138/242 (57.02%), Postives = 155/242 (64.05%), Query Frame = 1 

Query: 51  QMSGTKSTDVMLEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEFLFK------------ 110
           Q SG KSTDV+LEIG GTGNLTKKLLECGKMVIAV +D + VLE   +            
Sbjct: 47  QKSGIKSTDVILEIGPGTGNLTKKLLECGKMVIAVELDPRMVLELQRRFQDTPYSSRLKV 106

Query: 111 ---EMYKTELPYLDICVANIPYQISSPLTFKLLNHQPSFPSAIIMFHRWGDS---GQPGD 170
              ++ KTELPY DICVANIPYQISSPLTFKLLNHQP+F  AIIMF R        QPGD
Sbjct: 107 IQGDVLKTELPYFDICVANIPYQISSPLTFKLLNHQPAFRCAIIMFQREFAMRLVAQPGD 166

Query: 171 KIHCRLTV-------------------------DSSV---EPMEPRIEVKQKEWDGFLII 230
           K++CRLTV                         DSSV   EP +PRIEVKQKEWDGFL I
Sbjct: 167 KLYCRLTVNTQLLARVSHLLKVGKNNFRPPPKVDSSVVRIEPRKPRIEVKQKEWDGFLRI 226

Query: 231 CSIQENKTFCSIIRQKSAISLLEKKYKTFCALNVLQQDFADNDDGDFDYSRFDDSNEDQT 247
           C  ++NKT  SI RQKS +SLLEK YKT C+LN+LQQ    NDD   DY     SNEDQ+
Sbjct: 227 CFNRKNKTLGSIFRQKSVLSLLEKNYKTLCSLNILQQGSGGNDDSALDY-----SNEDQS 283

[Close]
BLAST of Csa4G377170 vs. NCBI nr
Match: gi|703064615|ref|XP_010087246.1| (putative dimethyladenosine transferase [Morus notabilis])

HSP 1 Score: 216.5 bits (550), Expect = 5.8e-53
Identity = 127/241 (52.70%), Postives = 149/241 (61.83%), Query Frame = 1 

Query: 51  QMSGTKSTDVMLEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEFLFK------------ 110
           Q +G K+TD +LEIG GTGNLTKKLLE GK VIAV +D + VLE   +            
Sbjct: 47  QKAGIKTTDTILEIGPGTGNLTKKLLEAGKAVIAVEVDPRMVLELQRRFQGTPLSNRLKV 106

Query: 111 ---EMYKTELPYLDICVANIPYQISSPLTFKLLNHQPSFPSAIIMFHRWGDS---GQPGD 170
              ++ KT+LPY DICVANIPYQISSPLTFKLLNHQPSF  AIIMF R        QPGD
Sbjct: 107 IKGDVLKTDLPYFDICVANIPYQISSPLTFKLLNHQPSFRCAIIMFQREFAMRLVAQPGD 166

Query: 171 KIHCRLTV-------------------------DSSV---EPMEPRIEVKQKEWDGFLII 230
           K++CRLTV                         DSSV   EP +PRIEVKQKEWDGFL I
Sbjct: 167 KVYCRLTVNTQLLARVSHLLKVGKNNFRSPPKVDSSVVRIEPRKPRIEVKQKEWDGFLRI 226

Query: 231 CSIQENKTFCSIIRQKSAISLLEKKYKTFCALNVLQQDFADNDDGDFDYSRFDDSNEDQT 246
           C  ++NKT  SI RQKS ++LLEK YKT  AL +  Q   +++D   D+SR  D+NED  
Sbjct: 227 CFNRKNKTLGSIFRQKSVVTLLEKNYKTVQALKLSGQGLMEDNDNKMDFSRLGDNNEDLN 286

[Close]
BLAST of Csa4G377170 vs. NCBI nr
Match: gi|502124503|ref|XP_004498555.1| (PREDICTED: probable dimethyladenosine transferase [Cicer arietinum])

HSP 1 Score: 213.4 bits (542), Expect = 4.9e-52
Identity = 135/289 (46.71%), Postives = 166/289 (57.44%), Query Frame = 1 

Query: 15  RQMQGRRMQHH-FKEGFHSINPKASIFSRIPCLLTTF-QMSGTKSTDVMLEIGLGTGNLT 74
           ++ +G+  QH  ++ G      K     + P L+ T  Q SG K+TD++LEIG GTGNLT
Sbjct: 7   KKEKGKSQQHTPYQSGITFHKSKGQHILKNPLLVDTIVQKSGIKTTDIVLEIGPGTGNLT 66

Query: 75  KKLLECGKMVIAVRIDLQTVLEF--------------LFKEMYKTELPYLDICVANIPYQ 134
           KKLL+ GK VIAV +D + VLE               +  ++ KTELPY DICVANIPYQ
Sbjct: 67  KKLLDAGKKVIAVEVDPRMVLELHKRFQGTPSTRLTVIQGDVLKTELPYFDICVANIPYQ 126

Query: 135 ISSPLTFKLLNHQPSFPSAIIMFHRWGDS---GQPGDKIHCRLTV--------------- 194
           ISSPLTFKLLNHQP+F  AIIMF R        QPGDK++CRLTV               
Sbjct: 127 ISSPLTFKLLNHQPAFRCAIIMFQREFAMRLVAQPGDKLYCRLTVNTQLHSRISHLLKVG 186

Query: 195 ----------DSSV---EPMEPRIEVKQKEWDGFLIICSIQENKTFCSIIRQKSAISLLE 254
                     DSSV   EP +PRIEV QKEWDGFL IC  ++NKT  +I RQK+ ISLLE
Sbjct: 187 RNNFRPPPKVDSSVVRIEPRKPRIEVNQKEWDGFLRICFNRKNKTLGAIFRQKNVISLLE 246

Query: 255 KKYKTFCALNVLQQDFADNDDGDFDYSRFDDSNEDQTMKSMVMEMTEDQ 257
             YKT  AL + Q+      D   D+S F D  +DQ      MEM +D+
Sbjct: 247 NNYKTVQALKISQEGSLKETDTKVDFSDFTDFGDDQG-----MEMDDDR 290

The following BLAST results are available for this feature:
BLAST of Csa4G377170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DIM1A_ARATH2.9e-4441.47Ribosomal RNA small subunit methyltransferase OS=Arabidopsis thaliana GN=DIM1A P... [more]
DIM1_DICDI1.0e-3334.39Probable dimethyladenosine transferase OS=Dictyostelium discoideum GN=dimt1 PE=3... [more]
DIM1_DROME4.7e-3137.34Probable dimethyladenosine transferase OS=Drosophila melanogaster GN=CG11837 PE=... [more]
DIM1_HUMAN1.2e-2935.00Probable dimethyladenosine transferase OS=Homo sapiens GN=DIMT1 PE=1 SV=1[more]
DIM1_MACFA1.2e-2935.00Probable dimethyladenosine transferase OS=Macaca fascicularis GN=DIMT1 PE=2 SV=1[more]
BLAST of Csa4G377170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYM8_CUCSA2.9e-152100.00rRNA adenine N(6)-methyltransferase OS=Cucumis sativus GN=Csa_4G377170 PE=3 SV=1[more]
A0A0A0LY97_CUCSA1.4e-5857.02rRNA adenine N(6)-methyltransferase OS=Cucumis sativus GN=Csa_1G679560 PE=3 SV=1[more]
W9QXZ8_9ROSA4.0e-5352.70rRNA adenine N(6)-methyltransferase OS=Morus notabilis GN=L484_009755 PE=3 SV=1[more]
A0A0R0JNL1_SOYBN1.3e-5145.93rRNA adenine N(6)-methyltransferase OS=Glycine max GN=GLYMA_06G315500 PE=3 SV=1[more]
I1LYL2_SOYBN1.3e-5145.93rRNA adenine N(6)-methyltransferase OS=Glycine max GN=GLYMA_06G315500 PE=3 SV=1[more]
BLAST of Csa4G377170 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G47420.11.6e-4541.47 Ribosomal RNA adenine dimethylase family protein[more]
AT5G66360.23.0e-1539.37 Ribosomal RNA adenine dimethylase family protein[more]
BLAST of Csa4G377170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199445|gb|KGN54603.1|4.1e-152100.00hypothetical protein Csa_4G377170 [Cucumis sativus][more]
gi|659086143|ref|XP_008443786.1|3.7e-6051.76PREDICTED: probable dimethyladenosine transferase [Cucumis melo][more]
gi|449449575|ref|XP_004142540.1|2.0e-5857.02PREDICTED: probable dimethyladenosine transferase [Cucumis sativus][more]
gi|703064615|ref|XP_010087246.1|5.8e-5352.70putative dimethyladenosine transferase [Morus notabilis][more]
gi|502124503|ref|XP_004498555.1|4.9e-5246.71PREDICTED: probable dimethyladenosine transferase [Cicer arietinum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001737KsgA/Erm
IPR020598rRNA_Ade_methylase_Trfase_N
Vocabulary: Molecular Function
TermDefinition
GO:0000179rRNA (adenine-N6,N6-)-dimethyltransferase activity
GO:0008649rRNA methyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0000154rRNA modification
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031167 rRNA methylation
biological_process GO:0000154 rRNA modification
cellular_component GO:0005575 cellular_component
molecular_function GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity
molecular_function GO:0008649 rRNA methyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G377170.1Csa4G377170.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001737Ribosomal RNA adenine methyltransferase KsgA/ErmPANTHERPTHR11727DIMETHYLADENOSINE TRANSFERASEcoord: 238..255
score: 5.5E-24coord: 57..215
score: 5.5
IPR001737Ribosomal RNA adenine methyltransferase KsgA/ErmPFAMPF00398RrnaADcoord: 57..160
score: 1.
IPR020598Ribosomal RNA adenine methylase transferase, N-terminalSMARTSM00650rADcneu6coord: 46..171
score: 7.
NoneNo IPR availablePANTHERPTHR11727:SF7DIMETHYLADENOSINE TRANSFERASE-RELATEDcoord: 238..255
score: 5.5E-24coord: 57..215
score: 5.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G377170Cla023144Watermelon (97103) v1cuwmB354
Csa4G377170ClCG11G015510Watermelon (Charleston Gray)cuwcgB283
Csa4G377170Lsi04G023640Bottle gourd (USVL1VR-Ls)culsiB292
Csa4G377170Cla97C11G221560Watermelon (97103) v2cuwmbB283
Csa4G377170Bhi09G002216Wax gourdcuwgoB420
Csa4G377170CSPI04G18210Wild cucumber (PI 183967)cpicuB181
Csa4G377170Cucsa.274710Cucumber (Gy14) v1cgycuB391
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G377170Wax gourdcuwgoB364
Csa4G377170Cucumber (Chinese Long) v2cucuB140
Csa4G377170Cucurbita maxima (Rimu)cmacuB027
Csa4G377170Cucurbita maxima (Rimu)cmacuB289
Csa4G377170Cucurbita maxima (Rimu)cmacuB465
Csa4G377170Cucurbita maxima (Rimu)cmacuB714
Csa4G377170Cucurbita moschata (Rifu)cmocuB018
Csa4G377170Cucurbita moschata (Rifu)cmocuB276
Csa4G377170Cucurbita moschata (Rifu)cmocuB454
Csa4G377170Cucurbita moschata (Rifu)cmocuB708
Csa4G377170Melon (DHL92) v3.5.1cumeB298
Csa4G377170Watermelon (Charleston Gray)cuwcgB295
Csa4G377170Cucurbita pepo (Zucchini)cpecuB173
Csa4G377170Cucurbita pepo (Zucchini)cpecuB410
Csa4G377170Cucurbita pepo (Zucchini)cpecuB574
Csa4G377170Cucurbita pepo (Zucchini)cpecuB789
Csa4G377170Cucumber (Gy14) v2cgybcuB167
Csa4G377170Melon (DHL92) v3.6.1cumedB259
Csa4G377170Melon (DHL92) v3.6.1cumedB282
Csa4G377170Silver-seed gourdcarcuB0658
Csa4G377170Silver-seed gourdcarcuB0688
Csa4G377170Silver-seed gourdcarcuB0841
Csa4G377170Watermelon (97103) v2cuwmbB292