Csa4G339000 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G339000
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 14063614 .. 14063963 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAACTCAGAAGCTCTTTATTGTTTCCATGCTGGTCGCGGTCACATTTTCCTGTTTTGCTTCATCGAGTATTATTCTCTATCACTGAACTATTGTAATTTCGTAATGTAATTTTTTGTTTGTTTGTTATTTTAAAGTTAAAGAAGTATTTATTAAATGCTAATTCTTTGTCACATGGCAGTGGAGGGAGATGATCTATGGAATTGTGTTATACCATGTTCGAACAACAACGGAGATATTTTGTGTAATACTGCATGCATCGAACAAGACGAAGGCGCTGGATTTTGTGTTCCCAAGTTACCTGGCATTTCTGATATGAAAGTTTGTTGTTGCAACAATGGACGATGA

mRNA sequence

ATGGTAACTCAGAAGCTCTTTATTGTTTCCATGCTGGTCGCGGTCACATTTTCCTGTTTTGCTTCATCGATGGAGGGAGATGATCTATGGAATTGTGTTATACCATGTTCGAACAACAACGGAGATATTTTGTGTAATACTGCATGCATCGAACAAGACGAAGGCGCTGGATTTTGTGTTCCCAAGTTACCTGGCATTTCTGATATGAAAGTTTGTTGTTGCAACAATGGACGATGA

Coding sequence (CDS)

ATGGTAACTCAGAAGCTCTTTATTGTTTCCATGCTGGTCGCGGTCACATTTTCCTGTTTTGCTTCATCGATGGAGGGAGATGATCTATGGAATTGTGTTATACCATGTTCGAACAACAACGGAGATATTTTGTGTAATACTGCATGCATCGAACAAGACGAAGGCGCTGGATTTTGTGTTCCCAAGTTACCTGGCATTTCTGATATGAAAGTTTGTTGTTGCAACAATGGACGATGA

Protein sequence

MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCVPKLPGISDMKVCCCNNGR*

Homology

[Close]

BLAST of Csa4G339000 vs. TrEMBL
Match: A0A0A0L1R8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.4e-40
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1


Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60
          MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60

Query: 61 PKLPGISDMKVCCCNNGR 79
          PKLPGISDMKVCCCNNGR
Sbjct: 61 PKLPGISDMKVCCCNNGR 78

[Close]

BLAST of Csa4G339000 vs. TrEMBL
Match: A0A0A0LHG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.3e-11
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1


Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60
          M TQKL  +S++V + F+C AS+ +GD L  +CV PCS+   D  C   CI+++ GAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 VPKLPGISDMKVCCCN 76
           PKLP  S  K CCCN
Sbjct: 61 YPKLP--STDKDCCCN 74

[Close]

BLAST of Csa4G339000 vs. TrEMBL
Match: A0A0A0LJG5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-09
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 1


Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60
          M TQKL  +S++V V F C  S+ +GD L  +CV PC +   D  C   CI ++ GAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 VPKLPGISDMKVCCCNN 77
           PKLP  S  K CCCN+
Sbjct: 61 YPKLP--STDKDCCCND 75

[Close]

BLAST of Csa4G339000 vs. NCBI nr
Match: gi|700199339|gb|KGN54497.1| (hypothetical protein Csa_4G339000 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 6.3e-40
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1


Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60
          MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60

Query: 61 PKLPGISDMKVCCCNNGR 79
          PKLPGISDMKVCCCNNGR
Sbjct: 61 PKLPGISDMKVCCCNNGR 78

[Close]

BLAST of Csa4G339000 vs. NCBI nr
Match: gi|700206109|gb|KGN61228.1| (hypothetical protein Csa_2G071930 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 1.0e-10
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1


Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60
          M TQKL  +S++V + F+C AS+ +GD L  +CV PCS+   D  C   CI+++ GAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 VPKLPGISDMKVCCCN 76
           PKLP  S  K CCCN
Sbjct: 61 YPKLP--STDKDCCCN 74

[Close]

BLAST of Csa4G339000 vs. NCBI nr
Match: gi|700206110|gb|KGN61229.1| (hypothetical protein Csa_2G072430 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-09
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 1


Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60
          M TQKL  +S++V V F C  S+ +GD L  +CV PC +   D  C   CI ++ GAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 VPKLPGISDMKVCCCNN 77
           PKLP  S  K CCCN+
Sbjct: 61 YPKLP--STDKDCCCND 75

The following BLAST results are available for this feature:

BLAST of Csa4G339000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1R8_CUCSA	4.4e-40	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G339000 PE=4 SV=1	[more]
A0A0A0LHG9_CUCSA	7.3e-11	50.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G071930 PE=4 SV=1	[more]
A0A0A0LJG5_CUCSA	1.1e-09	48.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072430 PE=4 SV=1	[more]

BLAST of Csa4G339000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199339\|gb\|KGN54497.1\|	6.3e-40	100.00	hypothetical protein Csa_4G339000 [Cucumis sativus]	[more]
gi\|700206109\|gb\|KGN61228.1\|	1.0e-10	50.00	hypothetical protein Csa_2G071930 [Cucumis sativus]	[more]
gi\|700206110\|gb\|KGN61229.1\|	1.5e-09	48.05	hypothetical protein Csa_2G072430 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU130466	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G339000.1	Csa4G339000.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU130466	CU130466	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..19 score:

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G339000	CsGy4G016360	Cucumber (Gy14) v2	cgybcuB167

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G339000	Watermelon (97103) v2	cuwmbB294
Csa4G339000	Wax gourd	cuwgoB393
Csa4G339000	Cucumber (Gy14) v1	cgycuB380
Csa4G339000	Cucurbita maxima (Rimu)	cmacuB675
Csa4G339000	Cucurbita maxima (Rimu)	cmacuB863
Csa4G339000	Cucurbita maxima (Rimu)	cmacuB873
Csa4G339000	Cucurbita moschata (Rifu)	cmocuB665
Csa4G339000	Cucurbita moschata (Rifu)	cmocuB851
Csa4G339000	Cucurbita moschata (Rifu)	cmocuB860
Csa4G339000	Melon (DHL92) v3.5.1	cumeB334
Csa4G339000	Watermelon (Charleston Gray)	cuwcgB297
Csa4G339000	Watermelon (97103) v1	cuwmB342
Csa4G339000	Watermelon (97103) v1	cuwmB345
Csa4G339000	Cucurbita pepo (Zucchini)	cpecuB076
Csa4G339000	Cucurbita pepo (Zucchini)	cpecuB493
Csa4G339000	Cucurbita pepo (Zucchini)	cpecuB501
Csa4G339000	Melon (DHL92) v3.6.1	cumedB323
Csa4G339000	Silver-seed gourd	carcuB0506
Csa4G339000	Silver-seed gourd	carcuB0507
Csa4G339000	Silver-seed gourd	carcuB0555