Csa4G338420 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G338420
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionGeneral transcription factor IIH subunit; contains IPR005607 (BSD)
LocationChr4 : 13907097 .. 13917087 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTACGTTAATTGAGTTATGCAAACCTTTTACCGAGTTCAGTTATAATATGGTAACGTAGTTTGAACATTCTTTTTTAATATGCTTTTCTTATCTATCTAGTTCAGATTTTTGCTCTGAAACCAGCTGTTCACCAAGCATTTCTTAATCATGTTCCCAATAAGGTACTGCTAAATACTGGAAATAGTAACACGTTATCCTCTTTCTTCTTGGTTTTAATCATTTAGTTTGGAGGTAGTTAAATAAGCAAATATAAAAAACGTTAATTTATTTAAGCATTTTCTTTTTGTTTAATGACAGATATCGGAGAAAGACTTTTGGACAAAATATTTTAGAGCGGAGTACCTTCATAGTACAAAAAATTCTATTGCAGCTGCAGCAGAGGCTGCTGAAGATGAAGAACTTGCCCTTTTTCTGAAGGACGATGAGATATTGGCTGCTGAAACTCGGAAAAAGGTATATTTTTTAAAATGTCAACCTCTTAGAGATTTCTCGCTTATTAAAATACTTAGCGTGTTTTTTTTCTTCTGATTATTGTCATTTCATATTAAATTCTATTTATTTTGGTTCATGTTGTTTCTAGATTCGGCATGTTGATCCTACATTGGATTTGGAAGCTGATCTAGGGGATGATTACACACACCTTCCAGTATGTTATTGGTCTTTGTTACGGTATCTTGTTTGGATTTTTTTTTTTTGGTTCTTCATGGAAGACTTATCCTTATTTGCAGTGTTATTTATTCCTGGTGCGCTGAGAGTAAGAAAGAGTATTAGTTGTAATAGAAAGAGAGTTATTTGTATTAGAAAGGCGGTTAGTTGTGAGAATTCTTTAGGACCTTGTACTCATATTTTCCTATATATACAACACTTCTTCTCTCATTTGAGGAGGATAATCATTTGATAAAAAATTAGACTTTTGGTTTACACCAATGCCCTTGGAGGATTTATCTTTGGATCTTTAGCCTCATTCATATTTCAATGAAGCTTTTCTGTTTCTTGTTTAAAAAGAATAGACAGGAAAATCAATCTTTTTTGTTTTAGTACAATTCTTATGTACTTTGAGTATTAGTCTCTTTTATTAATACCTTTAATAAAGAGGCTCGTCTCCGTTTAGAAAAAATTAAGATACAGGAAGACCTTTCAGATAATAAAACTAATTTTTGTTATATTCAGATTGGTGGCTTTCTTATCTTACTGACTGATGCAAAATTTCTTAAATCTAGGATCATGGAATCTTTCGTGATGGTGGCAAGGAAATAACTGAATCACAAAATGAGCACTATAGAAGGACTTTGTCACAAGACCTTAATCGTCAAGGTGCAGTTGTTCTTGAAGGCAGAACTATTGGTTAGTTTCCAACTTGTGATAAATTTTATTCTTATGTTGCAGTTAATCAGGTAAACGTCTGAACTAATTTATAGGTAGTCCTTGTTGAATATATATAATGGTGAAATATACCCCCAAGCCATTGTGGTCCGTCTTATAAGGTAGATTACTTAGAATGGAGATTCCGTTTGTAGACTACTGTTTTACAAATATACCTTAGCCCATGATTTTATGTTCCTTGTCATTCTAGTGAAGGTCATACCTCTTTATTAATTAGTGATAATAATAAAGAGCCAAAGCTCAGAGTACATGAGAGATATACATGAACAAAAACCTAAGGATCAGTATGCGCACTAGGCCATCTCAGCTAGGTTGACACACTCCCTTGGCGCCCTCATCATGTCCAAACGCTAGTTACAAAAAACGGATTACAAGAAAATACCAAACTAAAGCAAGCCTTTCCCCATAGGCTAAACAGATATATTCTAATTATAATAAAAGAAAAAATATACACTTCCTAACGCTTGAAATTTTATAGGAAATCACAGATAGCATGAAAAGGACATTTTGTGTTGTTTAGAAGATGAAGACCTGCCAATTCAGTTGTATCTCTTGAAGGGAATACTCTTAGAAGGTTTTGGATAAGTAACACCATGACAAGGTGTTTAATTCTACTAGTAATGACTTGACCATGATGCACCATAAGAGGAGAGCGTTTTCTTCATACTAAACCCATCATAATTTACAGCACATTATTTCTGATATTATTGGCGAATATTCGCAGCAGCAGGTTCTGCCGGTTTACAGTATAAGGACAGCCAAAAGTAGATGCTGAAGATTTTCCTGGTAATTGGGGGGGGAGGACAAGTGGGGAGAAGGGTAATGGGATGAGCTTTTTCTGTGATACTGAAGCACAGTTCGGACTTCCAAACAGCATGATCCACACTGAAATATTTACTCTCTTCAGACATTTAGTTTTCCAAAAACTCCTTTGCAGTGCATTGTCATTAGGTGAAGCCATGGATAGATGATTGATTAGAGATTTAATAGCGAAGGAGCTGCTTGTCTCCAGGAACCAAACTCTTTGATCTGAGGATGTATTTAACATTTTTCCTTCCAGTGAACTGAACAAAGCGTTTACTCCGCTAGGTCTTAATTAGATTAATGTCGATTGCTGCTTGCTTCGTTTCCTGAATCAGAACCATGTCTGGATTTGAGCTCTTTAATAGTCTGTTCCCCTGCATCTATGGAACGAGGAGGTGTTTAAGAGGGTTGGTGATAAGCTTGGAGGCTTCATTGAGTTTGCGGAAGAAAATTCGAGCCTCATTAACTGCTTGGAAGTGAATATCAAAGTTAGAGGGAATTATTGCGGCTTCATTCCGGCGGATTTTGAGCTGATAGAAGGATCCGATTCTTATCTTGTGCAGGTGGCTTCCTTCCAAGATCCCAATCTTCTTATTGATAAAGTTGCTGGAATCCATGGATCCTTCTCGTCGGAACAAGCTGAGAATTTTTTCAAAGGTCTGGGCGGCCCGGATCCGAACCCGATTGATGTTTGGCGTGTGGAGAGGCCGAACTCAAGGTTGGCAGTTTACGCTTTTCAGAACTCTGGGATGGTGAGTACGGCGAGAGAAGAAGCTGAGAATATTTGTCCTTCTCTGCAAACTGACGGAGACATTAGAGGAACTAATTCAAATTTACCGCCCAAGCAAACCCTAATGGATTTGACTAATAAATTGGGCTTGACCAATGAAATGGGCCTCACTACGGATGTGGGCTTCCCTGATTTAAAAGGGAAAGGTATAGCAGTGGATGAAGTATTTACTCAAAAGCCCACCAATATTAAAAAGCAAACTGGGCTTTTTATTAGAGAAAATTCCCAAGCTACCCGTGCCAACCAACCAGTGTGATTTGCTGCACAAACCAACCTGGAGGCTCTTCAACTTCAACGTCCATATCAGACTGCATTCATGGAGAAATAGATCCAACTTCGGACGTTTCTATTTCAAGCTCAGGCAGCCTCATCTCTGAAAACAAATTTGCTCCTCTTGAAGCCGAAGACGTGCAACACATCTCTGATTTTTCTTCCGACGTCCAAAGACTCTTCCACGAGGGCTGGTATGGGATAAGTAAAATAATTTACCCACAAGGTGCTGATATTGTTCTTTATCAACTGGAACTTGATCATCAGAGTTTCCAAGTTTACAATTAAATTCAATAGGAGTATGAACATGCGGGACGACGTTCCAACATACCTATCTCGGTTAGCAAATCAAGGGTGTATTTTCTCTGAGACATGGAGATACTTTCTTTAGATCTAGATACCTTCTTTAGATCTGGCCACCTCCATTCCAAGGAAATATTTCAAATTTCCCAAATCCTTGATTTCAAACTCATCGCCCATTCTCTGCTTTAGTTGACTGATTTCTGCCTGATCATCTCCAGTCAAAACAATGTCATCCACATAAACTATTAGAACAGCAATCTTTCCTGTTTTGGAAACCTTTGTAAATAAAGTATGATCAGAGTGTCCCTGCCTGTACCCTTGGGACTTGACAAAGGTAGTAAATCTATCTAATCATGCTCGGGGAGACTGTTTCAGACCATATAGGGATTTCTGGAGTTTACACACCTGCTGACCAAACTGGGCTTCAAATCCAGGCGGGGGGCTCATGTAGACTTCCTCTACAAGGTCTCCATTCAAAAAAGCATTTTTAACATCCAGCTGGTATAGAGGCTAATCTTTGTTCACAGCAACAGATAGCAAAACTCTAATAGTATTCAACTTAGCAACTAGAGAAAAAGTTTCTGAATAGTCAATACCATATGTTCGAGTAAATCCTTTTGCAACTAACCTTGTCTTGTGTCTGTCAAGAGTACCATCTGCTTTGTATTTGAGAGAGAACACCCATTTGCATCCACAGTTTTGTGCCCCTTGGGTGGAGTACAAATGTCCCAAGTACTATTCTTTTCAAGAGCTTTCATCTCTTCCATGACAGCATTCTTCCATTTAGGACACTCTAAATTAGTGTATATATTTTTTGGTATTATGGTAGAGTCAAGGCTTGCTGTAAAAGCTCTGAACTGAGGAGAGAGATTATCGTAGGAAACATAGTTGCAAATGGGATGTTTAGTACAAACCTGGTACCTTTTCTCAGAGCAATGGGAATGTCAAGAGAGGAATCATACTCATTAGGTTTTCCTGTATGACCCTGTTCTACTTCATTATTACTGGTTTCTATTATGACCTCAGTCTCATCACCACTGTTATTTTCTTCCACATTTTCAAGGACAGCAACATTAGATGACAGTCACCCTACATTAGATGATAATCAACTTCGATGACCACGTCTTCTTCAGGCTCCAACAACTACTACCCACGATAAACTCCAACAAAAGCCACCTTCAATGATCAACTTCGATGACAGTCACCCGACAACTTTGATTATCACCTTGATCAACTAACTCCACCGACAAATTTTGTTCACATCCAACAGCTAACTCTATCGATCTACTCAACCGATAATATACTATAAAAAGAAAAAGGAAAGTTAGGCTAATGGAAGTGTATTTAAATACAAATTTATAACTATTAGTTTATAGTGTTTAATAGTTGTTTTTGTTTTTTCATAGTAATTTGATGTTGTGAGATCATCTGAGGATCAACTCATCCCTATTGTTATGCTCACCCCTCTAAAGTCCTACCTGTAAACTGTTGTGCTGTTTGGTCTTTGTGGGGTGAGCAGAACAGTAGGACTTTTAGAAGTTGGGATACGGACCCTAGTGAGACTTGGTCCTTCGTTCGTTATTATTTTTCTTTATGGGCTGTGATTTTGAAAACCTTTTGTAACTACTCCATTGGCATTCTTTTGCATACTTGGAGCCTTTTATGAGTTGAGTTCCCTTTTTCTGGGCTTGGTTTTTTATATGTTTGTGCTTGTATTCGTTCATTTTTTTTCAATGAAGTGGTTGCTTTTTTTAAAAAAAAAAGAAGCTATGAAATAAACATATGAATAATCAACATGTTCTAAGGTGAGCCTGAAATTCTCCATTTGAATCATAAATAGAAGCAATCGTACATTTTCTTTGAGTTAGTATTTCTTCCTAAAAAGCTGACTGTTTAATTTTCTGAATTGTTGCTTTGCAAAATTGAGAGTAGATGTAGACTTGGAAGATCCAAGGACCGTTGCAGATGCACTTGTGCGGTCTAAACATGGTTAGTATGGCTTATGAAGGTTTCTTTTCTCAATTGCACTCCGGGTTTGTCACTAACTTTGCTTCTATTCTATCAAGCGTTGAGCAATTAAATACTAGTAACTGATTTTACAGCGGTAGAAGGAAATGAGAGCCAGACAGCACTTGATAGGATCTCTAGGATGACAGCAATTGAGGATCTTCAAGCTCCTCATAGCCATCCTTTTGCTCCTCTTTGTATCAAGGTTTGATTTTTATTGGTGAAGGACACTAAGATCTACAATCATTTTAGTAGAAGACAATTTGATGCCATATTTCCATGGCAGGATCCTCGAGATTATTTTGATGCTCAACAAGCAAATGCCATTAAGACATTGGATGATACACGAGCTGGAATGCAACAAACTAAATGCAGTTTAAGCACTACAGAAGCATATGGCTCACTGAGGGAATCCATATCTGAGATCAAGTCATCTGGATTCAATCATCCCATAATTAAACCGGAAGTTGCACTTATGGTAAAAGCACCTGCAGCATTATCTTGCTAAAAACAGCTATTTTTGCTATCTACATTGACAACTCTTCAGCTACTGAGCATTGATTTCTTTTTTTTGTAGGTTTATAATGGATTAACTCAAAATATTTCTAGTACCAAATATCAACTTGGGAAAAACCCTCAGGAGAGTATTCTGGAGAGTTTGCCAAACCCTACTAAGGAGGAACTGCTACACGTGAGTTGGTGCTCCTCTTGCCGTAATATTTGAATATATATATATATTGAAAGGAAAACAAGTCTCTTTTGTTAATTATAAGAGAGAATAAAGCTCATAGTATAAGAGGTTTATACAATGAGCAAAAGAAAACATAGGATCAGCAGACATACCCAGACATCTCAATTAGGTTAACACTCCTTTAGTGTCCTTGTCATATCCAAACAAAACTAAGAAAAGACTTGTCAAAGAAGGCAACCATACTGCCTTTACAGCATATAATAGTGATATTATAATATATTTTGATGGCTGGTTTTCAGGAGATGTTAAAATCACCAATTTAACCATCTCACTAATATTTATTGGCCACAATAATTATATTTTAGACATTGAAGTTGGTTGACTGCATACGTTATTGTTCTCCTGTCACTTGTCTCTTCAGATATTACTGTTTATTGAGGTATTGTTTAAGAAAGCTTATTGTTTCCAGCATTGGATCTCGATTCAAGAATTACTCAAGCATTTTTGGTCGTCTTATCCAATCACCACATCATATCTTTATACCAAAGTAAGTTCTTATTCTTATTGCATTAACAAGACGATTCTTCATTTGATACTTTTTATCCAATCACATCATCTTATCTTTATCCATTTATTTCTATATTGAATAAGTAGTTCAAGTTCTACTTCTTTAATACTTAACATTTTATGAACTACTGTTGTGCAAACGATTCACAATATTTACATTGTCGGGAACTTAAGGTTATGCAACGAAGCTCTGTTGGCCAAATGGTTGTGGCATTTTGCCCTTGAACCCGAAGCCTTCTGGTCAAAGATTATCGTGAGTAAACATGGCCCTCATCCTTCTGAGTGGGTGGTGAAAGGGCCAAAGGTACACCGTACACACCGTAATCCTTGGAAAGATATCTCCTTCTCCCTTCTTATTCCCATTTTGTATTCTGGGTTGTAGGTGAAGGTCGGGATACATTTTTCTGCAAGGATCATTGGGTGGGGGATAAACCTCTCTTCAACATTTCCTAGGTTATACCATTTGTCTTCTTTGAAAAGCTGCTTTGTATCAGATCTTTTTCTTTAGTCTGAGAACTCGGTTTCTTTATCCTTTGGTTTTCGTTGGGCTTTGTCCAATAAGGAGTCGACGGAGGTGGCTTCTCTTCTTTCTTTGATAGGGTTTTTACTTTAGATTGGGTAGAAGGGATGTTTGTGTTCGGATTACTAATCTAATGGAGGGTTTTCTTGGAAGCCTTTCTTTAGGATTTTAGTTAACCCTTCTCCCATCGTTGAATTGGCCTTTGATATTCTTTGGAGGATTGAGATTCCTAAGAAAGTTAGGTTCTTCGTCTGCCAAGTTCTGCTTGGCCGTGTGAATACAGTGGACAAGGTTTCAAGAAGGTTGCCTTTGTTAACGGGTCTTTTCTGTTGCATTTTTTGCTACAAGACGGGGGAAAGCCTGGATTGCTTTCTTTAAGAGTGTTAGTACTCGAGATCAATATGGATTTCTTTCTTGCCGGAGTTTGATGCTTCGTTTGCTTGTTCGAGGGATGTTCATCTGATGATTCCAAAATCCTTCTTCATCCGCCTTTCAGTGAGAAATGGTGTTTTCTTTGGTTTGCTGGGGTGTGCTGTGATTTGGGATCTGTGGGGTGAGAGAAATAATAACGGGTGTTCACTGTTCAGAGGTGTGGAAATGGACCCTTGTGAGGTTTGATTCTTGATGAGGTTTCATGTTTCTCTTTGGACTTCGGTTTCGAAGGTCTTTTGTAATTACTCTCTTGGCAGTATTTTACCTAGTTGGAAATCCTTTCTGTAGTGGGGTTCTGTTTTGGGGGCTTGATTTTTTTGGATGCCCTTCTATTCTTTCATTTTTTCTCAGTGAAAGTTGTTTCTATACACGCACATATATATATATATATATAAAGCTTCAATCAAAATTGAATAAATGATGCTAGTTGTTGCGCCAATACGTTTATGGGCTTATGTATTACTGGATTGGACTCAATTAAGGACCAGGTCCTTTGATAGATTTCAAGGGTCTAATTCATGCTTCTAAAGGCACAAGGCCAGTGGAAAACGAATAACAGAAAACCTAGACTTTGTTCTGTAGGCACAAGGCAAGGTGACCTCTTCTCTCTCGTGTTTATTATTCATAGTTGATTTATTTTGATACTCTTCAATTATGAGGCCTTGGAACAACCTAATTGAGGATTTGAACTTTGAAATGGAAGTACTGCTGTTCATACAACAAATTTTATGCTACCCTCCAATCCACTTCTTGTTAGGAGAAAATGCTTAATCTTTGTAACATTTTGCAGATCCTGGAGGTTTGTGGCATTAACTTTTGCTTCCAAACAAAGGTTAGCTTTGGAGCATCAATTGTGCCAACTCTTAACTAGGAAGAGTTCGTAAATAGTCTCAGCTACAATATCAACCTTTGGCCCTCCCCATATCTTGGTATTCTCTTGATTGTAGCTCTAGAATACAAAAAAGCCTCATTTTGTACTTTGAAAAACTGTGGTGCTGGTAGAATATTTTGTGAGGTAAAGAAACAGGGAAATAAAAACCCTTTCTAGGGTGGGTTACTTAGCTTTTGATACTGGAAAGGTTGGTGCATGATTGGAAATGTTGGATTAGAGTTTGAAACTTGGGATGAAGAATCTTCCTACTAGATGTATGATTTGACGTCAATATCGAACTAGTATTTTCCAAGTGAACAAGAAAACCAAATTTCTATTGGAATTTGTTTTTTAGCTTTTGTTGTAGATGTAGACTGAATTTTCTCTCTTGGTATAATACTCTTGTACTTTTTGCTTAAGGCTCTTTTACTAATAATAATTTATTATTAAGAGGCTTGTCTTCGCTCAAAAAAAAGGAAACCAAATAGGTCACGTTGCCTGCTCCAACAAATTGGAAAACGCTCACTTCCAAAAAAAATCCTTCTAATCAAACTCTGATTTAAAAAATGACCCTACTATTCCAGACTTGGTCTCGCATATTGTTTGAAAAATGTTTATCCTTTCCTTCTTTCTGGATGTGATTTGACCTGCTGATGCACTTTTTAGCGTCAACTTTTTATGCTTGGTATATATTGCATTTTTGGTATAAGTCGCTTGTACTCTTATTGCTTGTTGGTATGTTAATTGCTACGCAGGTGAGCAGATTGAAGGATGCAATGGCCAAAATCTATCGACAGTTAGAGGTACACAACTGCCCCCCCAATAATATATATTTGCATTATTATAGTTTTATGATACCATTTTTATTAAAAGCAGGAGATCAAGGAAACCGTGGTGGCAGATTTCCGCCACCAAGTATCTCTTTTGGTTCGTCCAATGCACCAGGTTTGTAGTGTGTTCTCTTTCAAAACTTATACAAGTACCTCAAACTTATAAAATTAACCACAATCAAACCTTGTTATAACTTTATTGATGAGTGGTTACAATTGGGTTCTAAATCCCCAATCGTAAACCACTTTTAAACTAGATCCACTTTTAAACTAGATGTAATAATACGCGACCACAAAAGTTGATGGTATTGTTGAATTAGAACCCTTTGTTTTGTGAGTTTAGGAGGATTGGATTATAATAGCCCTTTATTTTCTTATGCATGGTCGTGAGCATGGTGGATGAGAAGATTTGTTTGATTCATGTTTTGTAGGCTCTGGATGCTGCGTTTCAGCATCATGACGCTGACATGCAGAAGAGATCAGTAAAGAGTGGAGAAAGGCTTAACGGATACACTTAG

mRNA sequence

ATGTTTCAGATTTTTGCTCTGAAACCAGCTGTTCACCAAGCATTTCTTAATCATGTTCCCAATAAGATATCGGAGAAAGACTTTTGGACAAAATATTTTAGAGCGGAGTACCTTCATAGTACAAAAAATTCTATTGCAGCTGCAGCAGAGGCTGCTGAAGATGAAGAACTTGCCCTTTTTCTGAAGGACGATGAGATATTGGCTGCTGAAACTCGGAAAAAGATTCGGCATGTTGATCCTACATTGGATTTGGAAGCTGATCTAGGGGATGATTACACACACCTTCCAGATCATGGAATCTTTCGTGATGGTGGCAAGGAAATAACTGAATCACAAAATGAGCACTATAGAAGGACTTTGTCACAAGACCTTAATCGTCAAGGTGCAGTTGTTCTTGAAGGCAGAACTATTGATGTAGACTTGGAAGATCCAAGGACCGTTGCAGATGCACTTGTGCGGTCTAAACATGCGGTAGAAGGAAATGAGAGCCAGACAGCACTTGATAGGATCTCTAGGATGACAGCAATTGAGGATCTTCAAGCTCCTCATAGCCATCCTTTTGCTCCTCTTTGTATCAAGGATCCTCGAGATTATTTTGATGCTCAACAAGCAAATGCCATTAAGACATTGGATGATACACGAGCTGGAATGCAACAAACTAAATGCAGTTTAAGCACTACAGAAGCATATGGCTCACTGAGGGAATCCATATCTGAGATCAAGTCATCTGGATTCAATCATCCCATAATTAAACCGGAAGTTGCACTTATGGTTTATAATGGATTAACTCAAAATATTTCTAGTACCAAATATCAACTTGGGAAAAACCCTCAGGAGAGTATTCTGGAGAGTTTGCCAAACCCTACTAAGGAGGAACTGCTACACCATTGGATCTCGATTCAAGAATTACTCAAGCATTTTTGGTCGTCTTATCCAATCACCACATCATATCTTTATACCAAAGTGAGCAGATTGAAGGATGCAATGGCCAAAATCTATCGACAGTTAGAGGAGATCAAGGAAACCGTGGTGGCAGATTTCCGCCACCAAGTATCTCTTTTGGTTCGTCCAATGCACCAGGCTCTGGATGCTGCGTTTCAGCATCATGACGCTGACATGCAGAAGAGATCAGTAAAGAGTGGAGAAAGGCTTAACGGATACACTTAG

Coding sequence (CDS)

ATGTTTCAGATTTTTGCTCTGAAACCAGCTGTTCACCAAGCATTTCTTAATCATGTTCCCAATAAGATATCGGAGAAAGACTTTTGGACAAAATATTTTAGAGCGGAGTACCTTCATAGTACAAAAAATTCTATTGCAGCTGCAGCAGAGGCTGCTGAAGATGAAGAACTTGCCCTTTTTCTGAAGGACGATGAGATATTGGCTGCTGAAACTCGGAAAAAGATTCGGCATGTTGATCCTACATTGGATTTGGAAGCTGATCTAGGGGATGATTACACACACCTTCCAGATCATGGAATCTTTCGTGATGGTGGCAAGGAAATAACTGAATCACAAAATGAGCACTATAGAAGGACTTTGTCACAAGACCTTAATCGTCAAGGTGCAGTTGTTCTTGAAGGCAGAACTATTGATGTAGACTTGGAAGATCCAAGGACCGTTGCAGATGCACTTGTGCGGTCTAAACATGCGGTAGAAGGAAATGAGAGCCAGACAGCACTTGATAGGATCTCTAGGATGACAGCAATTGAGGATCTTCAAGCTCCTCATAGCCATCCTTTTGCTCCTCTTTGTATCAAGGATCCTCGAGATTATTTTGATGCTCAACAAGCAAATGCCATTAAGACATTGGATGATACACGAGCTGGAATGCAACAAACTAAATGCAGTTTAAGCACTACAGAAGCATATGGCTCACTGAGGGAATCCATATCTGAGATCAAGTCATCTGGATTCAATCATCCCATAATTAAACCGGAAGTTGCACTTATGGTTTATAATGGATTAACTCAAAATATTTCTAGTACCAAATATCAACTTGGGAAAAACCCTCAGGAGAGTATTCTGGAGAGTTTGCCAAACCCTACTAAGGAGGAACTGCTACACCATTGGATCTCGATTCAAGAATTACTCAAGCATTTTTGGTCGTCTTATCCAATCACCACATCATATCTTTATACCAAAGTGAGCAGATTGAAGGATGCAATGGCCAAAATCTATCGACAGTTAGAGGAGATCAAGGAAACCGTGGTGGCAGATTTCCGCCACCAAGTATCTCTTTTGGTTCGTCCAATGCACCAGGCTCTGGATGCTGCGTTTCAGCATCATGACGCTGACATGCAGAAGAGATCAGTAAAGAGTGGAGAAAGGCTTAACGGATACACTTAG

Protein sequence

MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFLKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT*
Homology
[Close]
BLAST of Csa4G338420 vs. Swiss-Prot
Match: TFB1A_ARATH (Probable RNA polymerase II transcription factor B subunit 1-1 OS=Arabidopsis thaliana GN=TFB1-1 PE=2 SV=1)

HSP 1 Score: 480.3 bits (1235), Expect = 2.0e-134
Identity = 241/393 (61.32%), Postives = 303/393 (77.10%), Query Frame = 1 

Query: 1   MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF 60
           +FQIFA KPAV QAF+N+VP+K++EKDFWTKYFRAEYL+STKN+  AAAEAAEDEELA+F
Sbjct: 204 IFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVF 263

Query: 61  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 120
           LK DEILA ETR KIR VDPTLD+EAD GDDYTHL DHGI RDG  ++ E QN+ ++R+L
Sbjct: 264 LKPDEILARETRHKIRRVDPTLDMEADQGDDYTHLMDHGIQRDGTMDVVEPQNDQFKRSL 323

Query: 121 SQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEG------NESQTALDRISRMT 180
            QDLNR  AVVLEGR+IDV+ ED R VA+AL R K   +       + +Q  L+R+SR+ 
Sbjct: 324 LQDLNRHAAVVLEGRSIDVESEDTRIVAEALTRVKQVSKADGETTKDANQERLERMSRVA 383

Query: 181 AIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGSLR 240
            +EDLQAP + P APL IKDPRDYF++QQ N +      + G+++     +  EAYG L+
Sbjct: 384 GMEDLQAPQNFPLAPLSIKDPRDYFESQQGNVLNVPRGAK-GLKR-----NVHEAYGLLK 443

Query: 241 ESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELL 300
           ESI EI+++G + P+IKPEV+  V++ LT+ I++ K   GKNP+ES L+ LP  TK+E+L
Sbjct: 444 ESILEIRATGLSDPLIKPEVSFEVFSSLTRTIATAKNINGKNPRESFLDRLPKSTKDEVL 503

Query: 301 HHWISIQELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLL 360
           HHW SIQELLKHFWSSYPITT+YL+TKV +LKDAM+  Y +LE +KE+V +D RHQVSLL
Sbjct: 504 HHWTSIQELLKHFWSSYPITTTYLHTKVGKLKDAMSNTYSKLEAMKESVQSDLRHQVSLL 563

Query: 361 VRPMHQALDAAFQHHDADMQKRSVKSGERLNGY 388
           VRPM QALDAAF H++ D+Q+R+ KSGER NGY
Sbjct: 564 VRPMQQALDAAFHHYEVDLQRRTAKSGERPNGY 590

[Close]
BLAST of Csa4G338420 vs. Swiss-Prot
Match: TFB1C_ARATH (Probable RNA polymerase II transcription factor B subunit 1-3 OS=Arabidopsis thaliana GN=TFB1-3 PE=2 SV=2)

HSP 1 Score: 457.2 bits (1175), Expect = 1.8e-127
Identity = 230/385 (59.74%), Postives = 290/385 (75.32%), Query Frame = 1 

Query: 1   MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF 60
           +FQIFA KPAV QAF+N+VP K++EKDFWTKYFRAEYL+STKN+  AAAEAAEDEELA+F
Sbjct: 199 IFQIFAEKPAVRQAFINYVPKKMTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVF 258

Query: 61  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 120
           LK DEILA E R+K+R VDPTLD++AD GDDYTHL DHGI RDG  +I E QN+  +R+L
Sbjct: 259 LKPDEILAQEARQKMRRVDPTLDMDADEGDDYTHLMDHGIQRDGTNDIIEPQNDQLKRSL 318

Query: 121 SQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHA------VEGNESQTALDRISRMT 180
            QDLNR  AVVLEGR I+V  ED R VA+AL R+K        +  + +Q  L+R+SR T
Sbjct: 319 LQDLNRHAAVVLEGRCINVQSEDTRIVAEALTRAKQVSKADGEITKDANQERLERMSRAT 378

Query: 181 AIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGSLR 240
            +EDLQAP + P APL IKDPRDYF++QQ N +      +A  +      +  EAYG L+
Sbjct: 379 EMEDLQAPQNFPLAPLSIKDPRDYFESQQGNILSEPRGAKASKR------NVHEAYGLLK 438

Query: 241 ESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELL 300
           ESI  I+ +G + P+IKPEV+  V++ LT+ IS+ K  LGKNPQES L+ LP  TK+E++
Sbjct: 439 ESILVIRMTGLSDPLIKPEVSFEVFSSLTRTISTAKNILGKNPQESFLDRLPKSTKDEVI 498

Query: 301 HHWISIQELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLL 360
           HHW SIQEL++HFWSSYPITT+YL TKV +LKDAM+  Y  L+ +K++V +D RHQVSLL
Sbjct: 499 HHWTSIQELVRHFWSSYPITTTYLSTKVGKLKDAMSNTYSLLDAMKQSVQSDLRHQVSLL 558

Query: 361 VRPMHQALDAAFQHHDADMQKRSVK 380
           VRPM QALDAAFQH+++D+Q+R+ K
Sbjct: 559 VRPMQQALDAAFQHYESDLQRRTAK 577

[Close]
BLAST of Csa4G338420 vs. Swiss-Prot
Match: TF2H1_HUMAN (General transcription factor IIH subunit 1 OS=Homo sapiens GN=GTF2H1 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.7e-14
Identity = 90/390 (23.08%), Postives = 162/390 (41.54%), Query Frame = 1 

Query: 4   IFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAA---AEAAEDEELALF 63
           IF   PAV   +  +VP+ ++EK+FWT++F++ Y H  + +  +    AE A+ +E  L 
Sbjct: 196 IFRTYPAVKMKYAENVPHNMTEKEFWTRFFQSHYFHRDRLNTGSKDLFAECAKIDEKGL- 255

Query: 64  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 123
                    +T   +   +P LDL A   +D      +GI        ++S  E+    +
Sbjct: 256 ---------KTMVSLGVKNPLLDLTAL--EDKPLDEGYGISSVPSASNSKSIKENSNAAI 315

Query: 124 SQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIE--D 183
            +  N   A+VL       + ++ +T ++      ++ + +  Q A+ R     +IE  D
Sbjct: 316 IKRFNHHSAMVLAAGLRKQEAQNEQT-SEPSNMDGNSGDADCFQPAVKRAKLQESIEYED 375

Query: 184 LQAPHSHPFAPLCIKDPRDYFDAQ---QANAIKTLDDTRAGMQQTKCSLSTTEAYGSLRE 243
           L   +S     L +K    Y+      Q+    T  D     Q  +  +   EAY     
Sbjct: 376 LGKNNSVKTIALNLKKSDRYYHGPTPIQSLQYATSQDIINSFQSIRQEM---EAYTPKLT 435

Query: 244 SISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLH 303
            +    ++      + P  ALM   G TQ              ++I + +PN  + EL H
Sbjct: 436 QVLSSSAASSTITALSPGGALM--QGGTQ--------------QAINQMVPNDIQSELKH 495

Query: 304 HWISIQELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQV---- 363
            ++++ ELL+HFWS +P+ T +L  KV ++K         LE  + T +  F+ ++    
Sbjct: 496 LYVAVGELLRHFWSCFPVNTPFLEEKVVKMKS-------NLERFQVTKLCPFQEKIRRQY 546

Query: 364 --SLLVRPMHQALDAAFQHHDADMQKRSVK 380
             + LV  + + L  A+        +R +K
Sbjct: 556 LSTNLVSHIEEMLQTAYNKLHTWQSRRLMK 546

[Close]
BLAST of Csa4G338420 vs. Swiss-Prot
Match: TF2H1_MOUSE (General transcription factor IIH subunit 1 OS=Mus musculus GN=Gtf2h1 PE=1 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 1.9e-12
Identity = 92/401 (22.94%), Postives = 159/401 (39.65%), Query Frame = 1 

Query: 4   IFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAA---AEAAEDEELALF 63
           IF   PAV   +   VP+ ++EK+FWT++F++ Y H  + +  +    AE A+ +E  L 
Sbjct: 195 IFRTYPAVKMKYAETVPHNMTEKEFWTRFFQSHYFHRDRLNTGSKDLFAECAKIDEKGL- 254

Query: 64  LKDDEILAAETRKKIRHVDPTLDLEA------DLGDDYTHLPDHGIFRDGGKEITESQNE 123
                    +T   +   +P LDL +      D G   + +P         K I E+ N 
Sbjct: 255 ---------KTMVSLGVKNPMLDLTSLEDKPLDEGYSISSVPS----TSNSKSIKENSNA 314

Query: 124 HYRRTLSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQT-----ALDR 183
                + +  N   A+VL         ++ +    +      +V+GN   T     A+ R
Sbjct: 315 ----AIIKRFNHHSAMVLAAGLRKQQAQNGQNGEPS------SVDGNSGDTDCFQPAVKR 374

Query: 184 ISRMTAIE--DLQAPHSHPFAPLCIKDPRDYFDAQ---QANAIKTLDDTRAGMQQTKCSL 243
                +IE  DL   +S     L +K    Y+      Q+    T  D     Q  +  +
Sbjct: 375 AKLQESIEYEDLGNNNSVKTIALNLKKSDRYYHGPTPIQSLQYATSQDIINSFQSIRQEM 434

Query: 244 STTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILES 303
              EAY      +    ++      + P  ALM   G TQ              +++ + 
Sbjct: 435 ---EAYTPKLTQVLSSSAASSTITALSPGGALM--QGGTQ--------------QAVNQM 494

Query: 304 LPNPTKEELLHHWISIQELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVV 363
           +PN  + EL H ++++ ELL+HFWS +P+ T +L  KV ++K         LE  + T +
Sbjct: 495 VPNDIQSELKHLYVAVGELLRHFWSCFPVNTPFLEEKVVKMKS-------NLERFQVTKL 545

Query: 364 ADFRHQV------SLLVRPMHQALDAAFQHHDADMQKRSVK 380
             F+ ++      + LV  + + L  A+        +R +K
Sbjct: 555 CPFQEKIRRQYLSTNLVSHIEEMLQTAYNKLHTWQSRRLMK 545

[Close]
BLAST of Csa4G338420 vs. Swiss-Prot
Match: TF2H1_DICDI (General transcription factor IIH subunit 1 OS=Dictyostelium discoideum GN=gtf2h1 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.8e-07
Identity = 36/135 (26.67%), Postives = 69/135 (51.11%), Query Frame = 1 

Query: 3   QIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFLK 62
           QIF   P+V +A+  +VP KISE++FW KY +++Y +  ++S  A A   +D+  + +  
Sbjct: 270 QIFIQHPSVEKAYKANVPLKISEQNFWKKYVQSKYFYRDRSS--ANAPPVDDDLFSKYET 329

Query: 63  DDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLSQ 122
           D++      ++K+  ++P +DL +  G D      +G+  D  ++  + +       L +
Sbjct: 330 DEQNKIRILKRKLIDINPLVDLSSTDGFDTDVHSGYGVLLDQSQDPNKLEK---ALPLLR 389

Query: 123 DLNRQGAVVLEGRTI 138
             NR  A+VL  + +
Sbjct: 390 KFNRHSALVLGSKDL 399

[Close]
BLAST of Csa4G338420 vs. TrEMBL
Match: A0A0A0L1N5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G338420 PE=4 SV=1)

HSP 1 Score: 776.9 bits (2005), Expect = 1.1e-221
Identity = 388/388 (100.00%), Postives = 388/388 (100.00%), Query Frame = 1 

Query: 1   MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF 60
           MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF
Sbjct: 1   MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF 60

Query: 61  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 120
           LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL
Sbjct: 61  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 120

Query: 121 SQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQ 180
           SQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQ
Sbjct: 121 SQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQ 180

Query: 181 APHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGSLRESISEI 240
           APHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGSLRESISEI
Sbjct: 181 APHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGSLRESISEI 240

Query: 241 KSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISI 300
           KSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISI
Sbjct: 241 KSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISI 300

Query: 301 QELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQ 360
           QELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQ
Sbjct: 301 QELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQ 360

Query: 361 ALDAAFQHHDADMQKRSVKSGERLNGYT 389
           ALDAAFQHHDADMQKRSVKSGERLNGYT
Sbjct: 361 ALDAAFQHHDADMQKRSVKSGERLNGYT 388

[Close]
BLAST of Csa4G338420 vs. TrEMBL
Match: M5XD97_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003591mg PE=4 SV=1)

HSP 1 Score: 596.7 bits (1537), Expect = 2.1e-167
Identity = 293/386 (75.91%), Postives = 338/386 (87.56%), Query Frame = 1 

Query: 2   FQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 61
           +QIFALKPAVHQAFL  VP+K++EKDFWTKYFRAEYLHST+N++AAAAEAAEDEELA+FL
Sbjct: 179 YQIFALKPAVHQAFLTLVPSKMTEKDFWTKYFRAEYLHSTRNAVAAAAEAAEDEELAIFL 238

Query: 62  KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 121
           K+D ILA+E R+KIR VDPTLD+EAD GDDYTHLPDHGIFRDG K++TE QNE YRRTLS
Sbjct: 239 KEDAILASEARRKIRRVDPTLDMEADQGDDYTHLPDHGIFRDGSKDVTELQNELYRRTLS 298

Query: 122 QDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQA 181
           QDLNRQGAVVL+GRT+DVDLEDPRTVA+AL++S+   + +  Q  LDRI+RMT IEDLQ 
Sbjct: 299 QDLNRQGAVVLQGRTVDVDLEDPRTVAEALMQSRRESDESAEQERLDRITRMTEIEDLQE 358

Query: 182 PHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGSLRESISEIK 241
            H HP A LCIKDPRDYFD QQ NA+KTLDD+R G +Q KCSL+T EAYGSLRE+IS+IK
Sbjct: 359 HHDHPVAQLCIKDPRDYFDTQQVNALKTLDDSRTGTEQKKCSLTTEEAYGSLREAISKIK 418

Query: 242 SSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQ 301
           S G  +  + PE+A+ V NGLTQNISSTKYQLGKNPQ+S+L+SLPN TKEELLHHWISIQ
Sbjct: 419 SIGLKNSTVAPEIAITVLNGLTQNISSTKYQLGKNPQDSVLDSLPNKTKEELLHHWISIQ 478

Query: 302 ELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQA 361
           ELL+HFWSSYPITT+YL TKV RLKDAM++IYRQLEEIK+   +DFRHQVSLLVRPMHQA
Sbjct: 479 ELLRHFWSSYPITTTYLSTKVGRLKDAMSQIYRQLEEIKQ---SDFRHQVSLLVRPMHQA 538

Query: 362 LDAAFQHHDADMQKRSVKS-GERLNG 387
           LDAAFQH DAD+QKR+ +S GE  NG
Sbjct: 539 LDAAFQHFDADLQKRAARSGGETPNG 561

[Close]
BLAST of Csa4G338420 vs. TrEMBL
Match: D7UAQ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g01390 PE=4 SV=1)

HSP 1 Score: 573.5 bits (1477), Expect = 1.9e-160
Identity = 289/391 (73.91%), Postives = 327/391 (83.63%), Query Frame = 1 

Query: 3   QIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFLK 62
           QIFA KPAVHQAFLN VPNK++EKDFW KY RAEYLH T+N++AAAAEAAEDEELA+FLK
Sbjct: 211 QIFAEKPAVHQAFLNFVPNKMTEKDFWNKYCRAEYLHCTRNTVAAAAEAAEDEELAVFLK 270

Query: 63  DDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLSQ 122
            D+ILA E R+KIR VDPTLD+EAD GDDY HLPDHGIFRDG KEI + Q E YRRTLSQ
Sbjct: 271 HDDILANEARRKIRRVDPTLDMEADQGDDYMHLPDHGIFRDGSKEIIDPQYEQYRRTLSQ 330

Query: 123 DLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNE------SQTALDRISRMTAI 182
           DLNR  AVVLEGR IDV+LED RTVA+AL +SK     NE      ++  L+RISRMT I
Sbjct: 331 DLNRHAAVVLEGRPIDVELEDTRTVAEALAKSKRVEAANEKSDGSVTRERLERISRMTEI 390

Query: 183 EDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGSLRES 242
           EDLQAP   PFA LCIKDPRDYFD+QQANA+KTL DT AG +Q KCSLST EAYGSLR  
Sbjct: 391 EDLQAPRDLPFAALCIKDPRDYFDSQQANALKTLGDTLAGSKQIKCSLSTQEAYGSLRGF 450

Query: 243 ISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHH 302
           ISEIKS G + PI+KP++AL V NGLTQNISSTK+ LGKNPQES+L+ LP  TKEELLHH
Sbjct: 451 ISEIKSVGLSDPIVKPDIALKVLNGLTQNISSTKFHLGKNPQESVLDRLPIITKEELLHH 510

Query: 303 WISIQELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVR 362
           W SIQELL+HFWSSYPITT+YLYTK SRLKDAM++IY +L+EIKE+V +DFRHQVSLLV+
Sbjct: 511 WTSIQELLRHFWSSYPITTTYLYTKASRLKDAMSQIYPKLQEIKESVQSDFRHQVSLLVQ 570

Query: 363 PMHQALDAAFQHHDADMQKRSVKSGERLNGY 388
           PM QALDAAF H+DAD QKRS +SGER NG+
Sbjct: 571 PMLQALDAAFAHYDADQQKRSARSGERPNGF 601

[Close]
BLAST of Csa4G338420 vs. TrEMBL
Match: A0A0D2LY16_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G127200 PE=4 SV=1)

HSP 1 Score: 562.0 bits (1447), Expect = 5.7e-157
Identity = 277/393 (70.48%), Postives = 327/393 (83.21%), Query Frame = 1 

Query: 1   MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF 60
           + QIFA KPAVH+AFL++VPNK+SE+ FWTKYFRAEYLHSTKNSIAAAAEAAEDEELA+F
Sbjct: 204 ILQIFAEKPAVHRAFLSYVPNKMSERTFWTKYFRAEYLHSTKNSIAAAAEAAEDEELAVF 263

Query: 61  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 120
           LK D+ILA+E +KKIR VDPTLD+EAD GDDYTHLPDHGIFR+G KE+TESQNE Y+R+L
Sbjct: 264 LKQDDILASEAQKKIRRVDPTLDMEADEGDDYTHLPDHGIFREGNKEMTESQNELYKRSL 323

Query: 121 SQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAV------EGNESQTALDRISRMT 180
           SQD+NR  AVVLEGR +DV+LED + VA+AL +SK         +G+ S+  LDR+SRMT
Sbjct: 324 SQDINRHAAVVLEGRAVDVELEDTKAVAEALAQSKQKSSNKGESDGDISRERLDRLSRMT 383

Query: 181 AIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGSLR 240
            IEDLQ P++ P APLCIKDPRDYFD+QQANA++T  D   G++Q KC LST E YGSLR
Sbjct: 384 EIEDLQGPNTLPLAPLCIKDPRDYFDSQQANALRTSGDALGGIEQIKCGLSTQEVYGSLR 443

Query: 241 ESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELL 300
           ESIS IK+ G   PI+KPEVA  V + LT +IS+TKY +GKNPQES+L+ LP  TKEELL
Sbjct: 444 ESISSIKAMGLKEPIVKPEVAHQVLDALTNSISNTKYHIGKNPQESVLDRLPRKTKEELL 503

Query: 301 HHWISIQELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLL 360
           HHW SI ELLKHFW+SYPITT+YLY KV+RLKDAM+ IY QLEEIK +V ++ RHQVSLL
Sbjct: 504 HHWTSILELLKHFWASYPITTTYLYAKVNRLKDAMSNIYPQLEEIKGSVPSELRHQVSLL 563

Query: 361 VRPMHQALDAAFQHHDADMQKRSVKSGERLNGY 388
           VRPMHQALDAA QH++A MQKRS +SGER NGY
Sbjct: 564 VRPMHQALDAAIQHYEASMQKRSAQSGERPNGY 596

[Close]
BLAST of Csa4G338420 vs. TrEMBL
Match: A0A0D2QPQ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G127200 PE=4 SV=1)

HSP 1 Score: 555.4 bits (1430), Expect = 5.3e-155
Identity = 276/394 (70.05%), Postives = 326/394 (82.74%), Query Frame = 1 

Query: 1   MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF 60
           + QIFA KPAVH+AFL++VPNK+SE+ FWTKYFRAEYLHSTKNSIAAAAEAAEDEELA+F
Sbjct: 204 ILQIFAEKPAVHRAFLSYVPNKMSERTFWTKYFRAEYLHSTKNSIAAAAEAAEDEELAVF 263

Query: 61  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 120
           LK D+ILA+E +KKIR VDPTLD+EAD GDDYTHLPDHGIFR+G KE+TESQNE Y+R+L
Sbjct: 264 LKQDDILASEAQKKIRRVDPTLDMEADEGDDYTHLPDHGIFREGNKEMTESQNELYKRSL 323

Query: 121 SQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAV------EGNESQTALDRISRMT 180
           SQD+NR  AVVLEGR +DV+LED + VA+AL +SK         +G+ S+  LDR+SRMT
Sbjct: 324 SQDINRHAAVVLEGRAVDVELEDTKAVAEALAQSKQKSSNKGESDGDISRERLDRLSRMT 383

Query: 181 AIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGSLR 240
            IEDLQ P++ P APLCIKDPRDYFD+QQANA++T  D   G++Q KC LST E YGSLR
Sbjct: 384 EIEDLQGPNTLPLAPLCIKDPRDYFDSQQANALRTSGDALGGIEQIKCGLSTQEVYGSLR 443

Query: 241 ESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELL 300
           ESIS IK+ G   PI+KPEVA  V + LT +IS+TKY +GKNPQES+L+ LP  TKEELL
Sbjct: 444 ESISSIKAMGLKEPIVKPEVAHQVLDALTNSISNTKYHIGKNPQESVLDRLPRKTKEELL 503

Query: 301 HHWISIQELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLE-EIKETVVADFRHQVSL 360
           HHW SI ELLKHFW+SYPITT+YLY KV+RLKDAM+ IY QLE  IK +V ++ RHQVSL
Sbjct: 504 HHWTSILELLKHFWASYPITTTYLYAKVNRLKDAMSNIYPQLEVNIKGSVPSELRHQVSL 563

Query: 361 LVRPMHQALDAAFQHHDADMQKRSVKSGERLNGY 388
           LVRPMHQALDAA QH++A MQKRS +SGER NGY
Sbjct: 564 LVRPMHQALDAAIQHYEASMQKRSAQSGERPNGY 597

[Close]
BLAST of Csa4G338420 vs. TAIR10
Match: AT1G55750.1 (AT1G55750.1 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins))

HSP 1 Score: 480.3 bits (1235), Expect = 1.1e-135
Identity = 241/393 (61.32%), Postives = 303/393 (77.10%), Query Frame = 1 

Query: 1   MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF 60
           +FQIFA KPAV QAF+N+VP+K++EKDFWTKYFRAEYL+STKN+  AAAEAAEDEELA+F
Sbjct: 204 IFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVF 263

Query: 61  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 120
           LK DEILA ETR KIR VDPTLD+EAD GDDYTHL DHGI RDG  ++ E QN+ ++R+L
Sbjct: 264 LKPDEILARETRHKIRRVDPTLDMEADQGDDYTHLMDHGIQRDGTMDVVEPQNDQFKRSL 323

Query: 121 SQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEG------NESQTALDRISRMT 180
            QDLNR  AVVLEGR+IDV+ ED R VA+AL R K   +       + +Q  L+R+SR+ 
Sbjct: 324 LQDLNRHAAVVLEGRSIDVESEDTRIVAEALTRVKQVSKADGETTKDANQERLERMSRVA 383

Query: 181 AIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGSLR 240
            +EDLQAP + P APL IKDPRDYF++QQ N +      + G+++     +  EAYG L+
Sbjct: 384 GMEDLQAPQNFPLAPLSIKDPRDYFESQQGNVLNVPRGAK-GLKR-----NVHEAYGLLK 443

Query: 241 ESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELL 300
           ESI EI+++G + P+IKPEV+  V++ LT+ I++ K   GKNP+ES L+ LP  TK+E+L
Sbjct: 444 ESILEIRATGLSDPLIKPEVSFEVFSSLTRTIATAKNINGKNPRESFLDRLPKSTKDEVL 503

Query: 301 HHWISIQELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLL 360
           HHW SIQELLKHFWSSYPITT+YL+TKV +LKDAM+  Y +LE +KE+V +D RHQVSLL
Sbjct: 504 HHWTSIQELLKHFWSSYPITTTYLHTKVGKLKDAMSNTYSKLEAMKESVQSDLRHQVSLL 563

Query: 361 VRPMHQALDAAFQHHDADMQKRSVKSGERLNGY 388
           VRPM QALDAAF H++ D+Q+R+ KSGER NGY
Sbjct: 564 VRPMQQALDAAFHHYEVDLQRRTAKSGERPNGY 590

[Close]
BLAST of Csa4G338420 vs. TAIR10
Match: AT3G61420.1 (AT3G61420.1 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins))

HSP 1 Score: 457.2 bits (1175), Expect = 1.0e-128
Identity = 230/385 (59.74%), Postives = 290/385 (75.32%), Query Frame = 1 

Query: 1   MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF 60
           +FQIFA KPAV QAF+N+VP K++EKDFWTKYFRAEYL+STKN+  AAAEAAEDEELA+F
Sbjct: 199 IFQIFAEKPAVRQAFINYVPKKMTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVF 258

Query: 61  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 120
           LK DEILA E R+K+R VDPTLD++AD GDDYTHL DHGI RDG  +I E QN+  +R+L
Sbjct: 259 LKPDEILAQEARQKMRRVDPTLDMDADEGDDYTHLMDHGIQRDGTNDIIEPQNDQLKRSL 318

Query: 121 SQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHA------VEGNESQTALDRISRMT 180
            QDLNR  AVVLEGR I+V  ED R VA+AL R+K        +  + +Q  L+R+SR T
Sbjct: 319 LQDLNRHAAVVLEGRCINVQSEDTRIVAEALTRAKQVSKADGEITKDANQERLERMSRAT 378

Query: 181 AIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGSLR 240
            +EDLQAP + P APL IKDPRDYF++QQ N +      +A  +      +  EAYG L+
Sbjct: 379 EMEDLQAPQNFPLAPLSIKDPRDYFESQQGNILSEPRGAKASKR------NVHEAYGLLK 438

Query: 241 ESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELL 300
           ESI  I+ +G + P+IKPEV+  V++ LT+ IS+ K  LGKNPQES L+ LP  TK+E++
Sbjct: 439 ESILVIRMTGLSDPLIKPEVSFEVFSSLTRTISTAKNILGKNPQESFLDRLPKSTKDEVI 498

Query: 301 HHWISIQELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLL 360
           HHW SIQEL++HFWSSYPITT+YL TKV +LKDAM+  Y  L+ +K++V +D RHQVSLL
Sbjct: 499 HHWTSIQELVRHFWSSYPITTTYLSTKVGKLKDAMSNTYSLLDAMKQSVQSDLRHQVSLL 558

Query: 361 VRPMHQALDAAFQHHDADMQKRSVK 380
           VRPM QALDAAFQH+++D+Q+R+ K
Sbjct: 559 VRPMQQALDAAFQHYESDLQRRTAK 577

[Close]
BLAST of Csa4G338420 vs. NCBI nr
Match: gi|700199329|gb|KGN54487.1| (hypothetical protein Csa_4G338420 [Cucumis sativus])

HSP 1 Score: 776.9 bits (2005), Expect = 1.6e-221
Identity = 388/388 (100.00%), Postives = 388/388 (100.00%), Query Frame = 1 

Query: 1   MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF 60
           MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF
Sbjct: 1   MFQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALF 60

Query: 61  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 120
           LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL
Sbjct: 61  LKDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTL 120

Query: 121 SQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQ 180
           SQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQ
Sbjct: 121 SQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQ 180

Query: 181 APHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGSLRESISEI 240
           APHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGSLRESISEI
Sbjct: 181 APHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGSLRESISEI 240

Query: 241 KSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISI 300
           KSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISI
Sbjct: 241 KSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISI 300

Query: 301 QELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQ 360
           QELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQ
Sbjct: 301 QELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQ 360

Query: 361 ALDAAFQHHDADMQKRSVKSGERLNGYT 389
           ALDAAFQHHDADMQKRSVKSGERLNGYT
Sbjct: 361 ALDAAFQHHDADMQKRSVKSGERLNGYT 388

[Close]
BLAST of Csa4G338420 vs. NCBI nr
Match: gi|778694120|ref|XP_011653745.1| (PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X2 [Cucumis sativus])

HSP 1 Score: 773.9 bits (1997), Expect = 1.4e-220
Identity = 386/387 (99.74%), Postives = 387/387 (100.00%), Query Frame = 1 

Query: 2   FQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 61
           +QIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL
Sbjct: 123 YQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 182

Query: 62  KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 121
           KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS
Sbjct: 183 KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 242

Query: 122 QDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQA 181
           QDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQA
Sbjct: 243 QDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQA 302

Query: 182 PHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGSLRESISEIK 241
           PHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGSLRESISEIK
Sbjct: 303 PHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGSLRESISEIK 362

Query: 242 SSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQ 301
           SSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQ
Sbjct: 363 SSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQ 422

Query: 302 ELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQA 361
           ELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQA
Sbjct: 423 ELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQA 482

Query: 362 LDAAFQHHDADMQKRSVKSGERLNGYT 389
           LDAAFQHHDADMQKRSVKSGERLNGYT
Sbjct: 483 LDAAFQHHDADMQKRSVKSGERLNGYT 509

[Close]
BLAST of Csa4G338420 vs. NCBI nr
Match: gi|778694113|ref|XP_011653743.1| (PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Cucumis sativus])

HSP 1 Score: 773.9 bits (1997), Expect = 1.4e-220
Identity = 386/387 (99.74%), Postives = 387/387 (100.00%), Query Frame = 1 

Query: 2   FQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 61
           +QIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL
Sbjct: 209 YQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 268

Query: 62  KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 121
           KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS
Sbjct: 269 KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 328

Query: 122 QDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQA 181
           QDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQA
Sbjct: 329 QDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQA 388

Query: 182 PHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGSLRESISEIK 241
           PHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGSLRESISEIK
Sbjct: 389 PHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGSLRESISEIK 448

Query: 242 SSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQ 301
           SSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQ
Sbjct: 449 SSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQ 508

Query: 302 ELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQA 361
           ELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQA
Sbjct: 509 ELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQA 568

Query: 362 LDAAFQHHDADMQKRSVKSGERLNGYT 389
           LDAAFQHHDADMQKRSVKSGERLNGYT
Sbjct: 569 LDAAFQHHDADMQKRSVKSGERLNGYT 595

[Close]
BLAST of Csa4G338420 vs. NCBI nr
Match: gi|659114892|ref|XP_008457278.1| (PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Cucumis melo])

HSP 1 Score: 760.0 bits (1961), Expect = 2.0e-216
Identity = 377/387 (97.42%), Postives = 385/387 (99.48%), Query Frame = 1 

Query: 2   FQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 61
           +QIFALKPAVHQAFLNHVPNK+SEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL
Sbjct: 209 YQIFALKPAVHQAFLNHVPNKMSEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 268

Query: 62  KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 121
           KDDEILAA+TRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS
Sbjct: 269 KDDEILAADTRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 328

Query: 122 QDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQA 181
           QDLNRQGAVVLEGRTIDVDLEDPRTVA+ALVRS+HAVEGNE QTALDRISRMTAIEDLQA
Sbjct: 329 QDLNRQGAVVLEGRTIDVDLEDPRTVAEALVRSRHAVEGNERQTALDRISRMTAIEDLQA 388

Query: 182 PHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGSLRESISEIK 241
           PHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAY SLRESISEIK
Sbjct: 389 PHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYCSLRESISEIK 448

Query: 242 SSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQ 301
           SSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQ
Sbjct: 449 SSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQ 508

Query: 302 ELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQA 361
           ELLKHFWSSYPITTSYLYTKVSRLKDAM+KIYRQLEEIKETVVADFRHQVSLLVRPMHQA
Sbjct: 509 ELLKHFWSSYPITTSYLYTKVSRLKDAMSKIYRQLEEIKETVVADFRHQVSLLVRPMHQA 568

Query: 362 LDAAFQHHDADMQKRSVKSGERLNGYT 389
           LDAAFQHHDAD+QKRSVKSGER+NGYT
Sbjct: 569 LDAAFQHHDADLQKRSVKSGERVNGYT 595

[Close]
BLAST of Csa4G338420 vs. NCBI nr
Match: gi|659114900|ref|XP_008457283.1| (PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X5 [Cucumis melo])

HSP 1 Score: 755.4 bits (1949), Expect = 5.0e-215
Identity = 377/388 (97.16%), Postives = 385/388 (99.23%), Query Frame = 1 

Query: 2   FQIFALKPAVHQAFLNHVPNKISEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 61
           +QIFALKPAVHQAFLNHVPNK+SEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL
Sbjct: 115 YQIFALKPAVHQAFLNHVPNKMSEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFL 174

Query: 62  KDDEILAAETRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 121
           KDDEILAA+TRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS
Sbjct: 175 KDDEILAADTRKKIRHVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESQNEHYRRTLS 234

Query: 122 QDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQA 181
           QDLNRQGAVVLEGRTIDVDLEDPRTVA+ALVRS+HAVEGNE QTALDRISRMTAIEDLQA
Sbjct: 235 QDLNRQGAVVLEGRTIDVDLEDPRTVAEALVRSRHAVEGNERQTALDRISRMTAIEDLQA 294

Query: 182 PHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGSLRESISEIK 241
           PHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAY SLRESISEIK
Sbjct: 295 PHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYCSLRESISEIK 354

Query: 242 SSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQ 301
           SSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQ
Sbjct: 355 SSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQ 414

Query: 302 ELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLE-EIKETVVADFRHQVSLLVRPMHQ 361
           ELLKHFWSSYPITTSYLYTKVSRLKDAM+KIYRQLE EIKETVVADFRHQVSLLVRPMHQ
Sbjct: 415 ELLKHFWSSYPITTSYLYTKVSRLKDAMSKIYRQLEQEIKETVVADFRHQVSLLVRPMHQ 474

Query: 362 ALDAAFQHHDADMQKRSVKSGERLNGYT 389
           ALDAAFQHHDAD+QKRSVKSGER+NGYT
Sbjct: 475 ALDAAFQHHDADLQKRSVKSGERVNGYT 502

The following BLAST results are available for this feature:
BLAST of Csa4G338420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TFB1A_ARATH2.0e-13461.32Probable RNA polymerase II transcription factor B subunit 1-1 OS=Arabidopsis tha... [more]
TFB1C_ARATH1.8e-12759.74Probable RNA polymerase II transcription factor B subunit 1-3 OS=Arabidopsis tha... [more]
TF2H1_HUMAN7.7e-1423.08General transcription factor IIH subunit 1 OS=Homo sapiens GN=GTF2H1 PE=1 SV=1[more]
TF2H1_MOUSE1.9e-1222.94General transcription factor IIH subunit 1 OS=Mus musculus GN=Gtf2h1 PE=1 SV=2[more]
TF2H1_DICDI1.8e-0726.67General transcription factor IIH subunit 1 OS=Dictyostelium discoideum GN=gtf2h1... [more]
BLAST of Csa4G338420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1N5_CUCSA1.1e-221100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G338420 PE=4 SV=1[more]
M5XD97_PRUPE2.1e-16775.91Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003591mg PE=4 SV=1[more]
D7UAQ6_VITVI1.9e-16073.91Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g01390 PE=4 SV=... [more]
A0A0D2LY16_GOSRA5.7e-15770.48Uncharacterized protein OS=Gossypium raimondii GN=B456_001G127200 PE=4 SV=1[more]
A0A0D2QPQ6_GOSRA5.3e-15570.05Uncharacterized protein OS=Gossypium raimondii GN=B456_001G127200 PE=4 SV=1[more]
BLAST of Csa4G338420 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G55750.11.1e-13561.32 BSD domain (BTF2-like transcription factors, Synapse-associated prot... [more]
AT3G61420.11.0e-12859.74 BSD domain (BTF2-like transcription factors, Synapse-associated prot... [more]
BLAST of Csa4G338420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199329|gb|KGN54487.1|1.6e-221100.00hypothetical protein Csa_4G338420 [Cucumis sativus][more]
gi|778694120|ref|XP_011653745.1|1.4e-22099.74PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform... [more]
gi|778694113|ref|XP_011653743.1|1.4e-22099.74PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform... [more]
gi|659114892|ref|XP_008457278.1|2.0e-21697.42PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform... [more]
gi|659114900|ref|XP_008457283.1|5.0e-21597.16PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005607BSD_dom
IPR027079Tfb1/GTF2H1
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0006289nucleotide-excision repair
Vocabulary: Cellular Component
TermDefinition
GO:0000439core TFIIH complex
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006289 nucleotide-excision repair
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0090304 nucleic acid metabolic process
cellular_component GO:0000439 core TFIIH complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU103147cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G338420.1Csa4G338420.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU103147CU103147transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005607BSD domainPFAMPF03909BSDcoord: 4..43
score: 2.
IPR005607BSD domainPROFILEPS50858BSDcoord: 1..40
score: 12
IPR027079TFIIH subunit Tfb1/p62PANTHERPTHR12856TRANSCRIPTION INITIATION FACTOR IIH-RELATEDcoord: 1..385
score: 5.6E
NoneNo IPR availableunknownCoilCoilcoord: 322..342
scor
NoneNo IPR availableunknownSSF140383BSD domain-likecoord: 4..41
score: 3.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G338420Lsi01G020130Bottle gourd (USVL1VR-Ls)culsiB266
Csa4G338420CSPI04G16980Wild cucumber (PI 183967)cpicuB181
Csa4G338420CsGy4G016250Cucumber (Gy14) v2cgybcuB167
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G338420Cucumber (Gy14) v1cgycuB380
Csa4G338420Cucurbita maxima (Rimu)cmacuB675
Csa4G338420Cucurbita maxima (Rimu)cmacuB873
Csa4G338420Cucurbita moschata (Rifu)cmocuB665
Csa4G338420Cucurbita moschata (Rifu)cmocuB860
Csa4G338420Watermelon (97103) v1cuwmB345
Csa4G338420Cucurbita pepo (Zucchini)cpecuB076
Csa4G338420Cucurbita pepo (Zucchini)cpecuB493
Csa4G338420Silver-seed gourdcarcuB0506
Csa4G338420Silver-seed gourdcarcuB0555