Csa4G314450 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.AATAATAAAATTTCTATAATCAAAATTATAATGTCAATCAAGATTCAAAACCATAAGCTATGATCAATAAAAGCTTTGAAGAAACCCCTAGTGTTTCTTCTTCTTCCCACAACTTCAATGAGCAGACTGTGTTCATGTCTGTTTGATTGGAACATAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGGTTGGTTTTGGTTAGACAATAA ATGAGCAGACTGTGTTCATGTCTGTTTGATTGGAACATAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGGTTGGTTTTGGTTAGACAATAA ATGAGCAGACTGTGTTCATGTCTGTTTGATTGGAACATAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGGTTGGTTTTGGTTAGACAATAA MSRLCSCLFDWNIKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKGLVLVRQ*
BLAST of Csa4G314450 vs. Swiss-Prot
Match: Y5G8_ENCCU (UPF0329 protein ECU05_1680/ECU11_0050 OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU05_1680 PE=3 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 3.1e-12 Identity = 30/54 (55.56%), Postives = 51/54 (94.44%), Query Frame = 1
HSP 2 Score: 66.2 bits (160), Expect = 1.7e-10 Identity = 28/54 (51.85%), Postives = 48/54 (88.89%), Query Frame = 1
BLAST of Csa4G314450 vs. Swiss-Prot
Match: YCF2_OENAR (Protein Ycf2 OS=Oenothera argillicola GN=ycf2-A PE=3 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 2.0e-11 Identity = 30/60 (50.00%), Postives = 49/60 (81.67%), Query Frame = 1
BLAST of Csa4G314450 vs. Swiss-Prot
Match: ROCO5_DICDI (Probable serine/threonine-protein kinase roco5 OS=Dictyostelium discoideum GN=roco5 PE=3 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 5.8e-11 Identity = 31/54 (57.41%), Postives = 44/54 (81.48%), Query Frame = 1
BLAST of Csa4G314450 vs. Swiss-Prot
Match: CNGA1_MOUSE (cGMP-gated cation channel alpha-1 OS=Mus musculus GN=Cnga1 PE=2 SV=2) HSP 1 Score: 67.4 bits (163), Expect = 7.5e-11 Identity = 32/61 (52.46%), Postives = 46/61 (75.41%), Query Frame = 1
HSP 2 Score: 65.9 bits (159), Expect = 2.2e-10 Identity = 34/71 (47.89%), Postives = 50/71 (70.42%), Query Frame = 1
BLAST of Csa4G314450 vs. Swiss-Prot
Match: CNGA1_RAT (cGMP-gated cation channel alpha-1 OS=Rattus norvegicus GN=Cnga1 PE=2 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 9.8e-11 Identity = 31/56 (55.36%), Postives = 45/56 (80.36%), Query Frame = 1
HSP 2 Score: 65.5 bits (158), Expect = 2.9e-10 Identity = 34/70 (48.57%), Postives = 49/70 (70.00%), Query Frame = 1
BLAST of Csa4G314450 vs. TrEMBL
Match: A0A0A0KY35_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G314450 PE=4 SV=1) HSP 1 Score: 148.7 bits (374), Expect = 2.9e-33 Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1
BLAST of Csa4G314450 vs. TrEMBL
Match: A0A162IIM0_9HYPO (Histone H5 OS=Aschersonia aleyrodis RCEF 2490 GN=AAL_04903 PE=4 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 1.3e-22 Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 1
BLAST of Csa4G314450 vs. TrEMBL
Match: K9G6V6_PEND2 (Uncharacterized protein OS=Penicillium digitatum (strain PHI26 / CECT 20796) GN=PDIG_67850 PE=4 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 6.6e-22 Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 1
BLAST of Csa4G314450 vs. TrEMBL
Match: J3LX59_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 1.1e-21 Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 1
BLAST of Csa4G314450 vs. TrEMBL
Match: A0A0A0LPP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G372730 PE=4 SV=1) HSP 1 Score: 109.8 bits (273), Expect = 1.5e-21 Identity = 54/56 (96.43%), Postives = 54/56 (96.43%), Query Frame = 1
BLAST of Csa4G314450 vs. TAIR10
Match: AT5G53800.1 (AT5G53800.1 unknown protein) HSP 1 Score: 60.8 bits (146), Expect = 4.0e-10 Identity = 24/56 (42.86%), Postives = 45/56 (80.36%), Query Frame = 1
HSP 2 Score: 48.1 bits (113), Expect = 2.7e-06 Identity = 21/56 (37.50%), Postives = 37/56 (66.07%), Query Frame = 1
BLAST of Csa4G314450 vs. TAIR10
Match: AT5G48610.1 (AT5G48610.1 unknown protein) HSP 1 Score: 58.5 bits (140), Expect = 2.0e-09 Identity = 27/55 (49.09%), Postives = 40/55 (72.73%), Query Frame = 1
HSP 2 Score: 55.8 bits (133), Expect = 1.3e-08 Identity = 28/65 (43.08%), Postives = 43/65 (66.15%), Query Frame = 1
HSP 3 Score: 32.0 bits (71), Expect = 2.0e-01 Identity = 15/55 (27.27%), Postives = 31/55 (56.36%), Query Frame = 1
BLAST of Csa4G314450 vs. TAIR10
Match: AT1G29000.1 (AT1G29000.1 Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 56.2 bits (134), Expect = 9.8e-09 Identity = 26/54 (48.15%), Postives = 44/54 (81.48%), Query Frame = 1
HSP 2 Score: 55.8 bits (133), Expect = 1.3e-08 Identity = 30/68 (44.12%), Postives = 47/68 (69.12%), Query Frame = 1
BLAST of Csa4G314450 vs. TAIR10
Match: AT3G57150.1 (AT3G57150.1 homologue of NAP57) HSP 1 Score: 55.1 bits (131), Expect = 2.2e-08 Identity = 38/86 (44.19%), Postives = 44/86 (51.16%), Query Frame = 1
HSP 2 Score: 51.2 bits (121), Expect = 3.1e-07 Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 1
HSP 3 Score: 50.8 bits (120), Expect = 4.1e-07 Identity = 23/57 (40.35%), Postives = 39/57 (68.42%), Query Frame = 1
HSP 4 Score: 35.8 bits (81), Expect = 1.4e-02 Identity = 17/54 (31.48%), Postives = 29/54 (53.70%), Query Frame = 1
BLAST of Csa4G314450 vs. TAIR10
Match: AT4G35940.1 (AT4G35940.1 unknown protein) HSP 1 Score: 52.4 bits (124), Expect = 1.4e-07 Identity = 21/54 (38.89%), Postives = 40/54 (74.07%), Query Frame = 1
HSP 2 Score: 51.6 bits (122), Expect = 2.4e-07 Identity = 20/54 (37.04%), Postives = 40/54 (74.07%), Query Frame = 1
BLAST of Csa4G314450 vs. NCBI nr
Match: gi|700199260|gb|KGN54418.1| (hypothetical protein Csa_4G314450 [Cucumis sativus]) HSP 1 Score: 148.7 bits (374), Expect = 4.1e-33 Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1
BLAST of Csa4G314450 vs. NCBI nr
Match: gi|425770448|gb|EKV08921.1| (hypothetical protein PDIG_67850 [Penicillium digitatum PHI26]) HSP 1 Score: 110.9 bits (276), Expect = 9.5e-22 Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 1
BLAST of Csa4G314450 vs. NCBI nr
Match: gi|425770448|gb|EKV08921.1| (hypothetical protein PDIG_67850 [Penicillium digitatum PHI26]) HSP 1 Score: 107.5 bits (267), Expect = 1.0e-20 Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1
HSP 2 Score: 110.2 bits (274), Expect = 1.6e-21 Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 1
BLAST of Csa4G314450 vs. NCBI nr
Match: gi|307192747|gb|EFN75846.1| (G1/S-specific cyclin-D1 [Harpegnathos saltator]) HSP 1 Score: 106.7 bits (265), Expect = 1.8e-20 Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 1
HSP 2 Score: 109.8 bits (273), Expect = 2.1e-21 Identity = 54/56 (96.43%), Postives = 54/56 (96.43%), Query Frame = 1
BLAST of Csa4G314450 vs. NCBI nr
Match: gi|700207658|gb|KGN62777.1| (hypothetical protein Csa_2G372730 [Cucumis sativus]) HSP 1 Score: 90.5 bits (223), Expect = 1.3e-15 Identity = 45/58 (77.59%), Postives = 51/58 (87.93%), Query Frame = 1
HSP 2 Score: 109.0 bits (271), Expect = 3.6e-21 Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |