Csa4G297480 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G297480
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 12207606 .. 12207947 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGACCCGTTTGTTATAGTCCCATTGGTTTTTGTTTCCGTTGTTGTATTGTTCACGGTGTTGAGTTTTATTTGCTGGACATCTGGGGCCAGTTCCAGCGGCGGAGGACATGCTCATTTCGGCGGCGCTGCCCATGCTGGAGGATTCCATCATCATGCCGGCGGTCATGCTCACCACGTGGCCGTAGCCCATTCTGGAGGTGGAGGACACGGTTGTGGTGGTGGCGCCGGAGGTGGAGGTGGCTCTAGCTCTGCCTGTTGATGACCTTTTTTTTTTCCTGTCAATTGTGGCCGTATATATGTAATTTAATTAAACGGTTAATCAGGTTGTAATCTCTCC

mRNA sequence

ATGGCTGACCCGTTTGTTATAGTCCCATTGGTTTTTGTTTCCGTTGTTGTATTGTTCACGGTGTTGAGTTTTATTTGCTGGACATCTGGGGCCAGTTCCAGCGGCGGAGGACATGCTCATTTCGGCGGCGCTGCCCATGCTGGAGGATTCCATCATCATGCCGGCGGTCATGCTCACCACGTGGCCGTAGCCCATTCTGGAGGTGGAGGACACGGTTGTGGTGGTGGCGCCGGAGGTGGAGGTGGCTCTAGCTCTGCCTGTTGA

Coding sequence (CDS)

ATGGCTGACCCGTTTGTTATAGTCCCATTGGTTTTTGTTTCCGTTGTTGTATTGTTCACGGTGTTGAGTTTTATTTGCTGGACATCTGGGGCCAGTTCCAGCGGCGGAGGACATGCTCATTTCGGCGGCGCTGCCCATGCTGGAGGATTCCATCATCATGCCGGCGGTCATGCTCACCACGTGGCCGTAGCCCATTCTGGAGGTGGAGGACACGGTTGTGGTGGTGGCGCCGGAGGTGGAGGTGGCTCTAGCTCTGCCTGTTGA

Protein sequence

MADPFVIVPLVFVSVVVLFTVLSFICWTSGASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGGSSSAC*
Homology
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BLAST of Csa4G297480 vs. Swiss-Prot
Match: LORI_MOUSE (Loricrin OS=Mus musculus GN=Lor PE=2 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 6.0e-07
Identity = 27/61 (44.26%), Postives = 32/61 (52.46%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHS---GGGGHGCGGGAGGGGGSSSA 88
           G  S GGG +  GG +++GG     GG      V +S   GGGG  CGGG+ GGGG  S+
Sbjct: 116 GGYSGGGGGSSCGGGSYSGGGSSCGGGGGSGGGVKYSGGGGGGGSSCGGGSSGGGGGGSS 175


HSP 2 Score: 52.0 bits (123), Expect = 3.9e-06
Identity = 26/60 (43.33%), Postives = 33/60 (55.00%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAA---HAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGGSSSA 87
           G SS GGG++  GG++     GG +   GG +      +SGGGG  CGGG+ GGGG  S+
Sbjct: 213 GGSSCGGGYSGGGGSSGGSSCGGGYSGGGGSSCGGGGGYSGGGGSSCGGGSSGGGGGGSS 272


HSP 3 Score: 49.3 bits (116), Expect = 2.5e-05
Identity = 28/70 (40.00%), Postives = 33/70 (47.14%), Query Frame = 1 

Query: 27  WTSGASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGG------- 86
           ++ G SS GGG    GG  ++GG     GG +     +  GGGG  CGGG+GG       
Sbjct: 132 YSGGGSSCGGGGGSGGGVKYSGG--GGGGGSSCGGGSSGGGGGGSSCGGGSGGGGSYCGG 191

Query: 87  --GGGSSSAC 88
             GGGSS  C
Sbjct: 192 SSGGGSSGGC 199


HSP 4 Score: 48.1 bits (113), Expect = 5.6e-05
Identity = 23/53 (43.40%), Postives = 27/53 (50.94%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGG 83
           G SS GGG++  GG++  GG               +SGGGG  CGGG+ GGGG
Sbjct: 298 GGSSCGGGYSGGGGSSCGGGSSGGGSSCGGSGGGGYSGGGGGSCGGGSSGGGG 350


HSP 5 Score: 46.2 bits (108), Expect = 2.1e-04
Identity = 27/69 (39.13%), Postives = 32/69 (46.38%), Query Frame = 1 

Query: 26  CWTSGASSSGGGHAHFGGAAHAGG--------FHHHAGGHAHHVAVA--HSGGGGHGCGG 85
           C   G  S GGG +  GG++  GG           + GG +   +    +SGGGG  CGG
Sbjct: 245 CGGGGGYSGGGGSSCGGGSSGGGGGGSSQQYQCQSYGGGSSGGSSCGGRYSGGGGSSCGG 304


HSP 6 Score: 44.7 bits (104), Expect = 6.2e-04
Identity = 26/62 (41.94%), Postives = 30/62 (48.39%), Query Frame = 1 

Query: 28  TSGASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGGSS--S 87
           +S    SGGG ++ GG++  G      GG          GGGG  CGGG  GGGGSS  S
Sbjct: 174 SSCGGGSGGGGSYCGGSSGGGSSGGCGGGSGG--GKYSGGGGGSSCGGGYSGGGGSSGGS 233


HSP 7 Score: 44.7 bits (104), Expect = 6.2e-04
Identity = 24/58 (41.38%), Postives = 26/58 (44.83%), Query Frame = 1 

Query: 30 GASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGGSSSAC 88
          G +S GGG    GG    GG ++  GG         S GGG  CGGG GG  G  S+C
Sbjct: 17 GKTSGGGG----GGGGGGGGGYYSGGGSG---CGGGSSGGGSSCGGGGGGSYGGGSSC 67


HSP 8 Score: 44.3 bits (103), Expect = 8.1e-04
Identity = 23/56 (41.07%), Postives = 28/56 (50.00%), Query Frame = 1 

Query: 28  TSGASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGGS 84
           +SG SS GG ++  GG++  GG+               SGGGG  CGGG+ GGG S
Sbjct: 284 SSGGSSCGGRYSGGGGSSCGGGY---------------SGGGGSSCGGGSSGGGSS 324


HSP 9 Score: 43.5 bits (101), Expect = 1.4e-03
Identity = 26/60 (43.33%), Postives = 32/60 (53.33%), Query Frame = 1 

Query: 28  TSGASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGG----GGHGCGGGAGGGGGS 84
           +SG SS GG ++  GG++  GG+   +GG         SGG    GG G GG +GGGGGS
Sbjct: 284 SSGGSSCGGRYSGGGGSSCGGGY---SGGGGSSCGGGSSGGGSSCGGSGGGGYSGGGGGS 340


HSP 10 Score: 43.1 bits (100), Expect = 1.8e-03
Identity = 25/64 (39.06%), Postives = 28/64 (43.75%), Query Frame = 1 

Query: 26  CWTSGA--SSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGGS 85
           C++SG   SS G G  + GG    GG      G       +   GG  GCGGG  GGGG 
Sbjct: 393 CYSSGGGGSSGGCGGGYSGGGGGCGGGSSGGSGGGCGGGSSGGSGG--GCGGGYSGGGGG 452

Query: 86  SSAC 88
            S+C
Sbjct: 453 GSSC 454


HSP 11 Score: 41.2 bits (95), Expect = 6.9e-03
Identity = 23/63 (36.51%), Postives = 28/63 (44.44%), Query Frame = 1 

Query: 28  TSGASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVA--------HSGGGGHGCGGGAGG 83
           + G   SGGG    GG +  GG  +++       + A         SGGGG  CGGG+ G
Sbjct: 328 SGGGGYSGGGGGSCGGGSSGGGGGYYSSQQTSQTSCAPQQSYGGGSSGGGG-SCGGGSSG 387


HSP 12 Score: 40.4 bits (93), Expect = 1.2e-02
Identity = 21/52 (40.38%), Postives = 23/52 (44.23%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGG 82
           G  SSGG     GG +  G      GG++        GGGG  CGGG+ GGG
Sbjct: 417 GGGSSGGSGGGCGGGSSGGSGGGCGGGYSG------GGGGGSSCGGGSSGGG 462


HSP 13 Score: 40.0 bits (92), Expect = 1.5e-02
Identity = 25/72 (34.72%), Postives = 29/72 (40.28%), Query Frame = 1 

Query: 27  WTSGASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHG-------------C 86
           ++ G S  GGG +  G +   GG   + GG +        GGGG G             C
Sbjct: 35  YSGGGSGCGGGSSGGGSSCGGGGGGSYGGGSSC------GGGGGSGGGVKYSGGGGGSSC 94


HSP 14 Score: 38.1 bits (87), Expect = 5.8e-02
Identity = 25/57 (43.86%), Postives = 29/57 (50.88%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSG--GGGHGCGGGAGGGGGSS 85
           G+S  GGG +  GG +  GG   + GG +       SG  GGG G G  +GGGGGSS
Sbjct: 165 GSSGGGGGGSSCGGGSGGGG--SYCGGSS---GGGSSGGCGGGSGGGKYSGGGGGSS 216


HSP 15 Score: 33.5 bits (75), Expect = 1.4e+00
Identity = 24/73 (32.88%), Postives = 26/73 (35.62%), Query Frame = 1 

Query: 30  GASSSGGGHAHFG---------------GAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCG 88
           G  SSGGG  ++                G   +GG     GG         S GGG G G
Sbjct: 342 GGGSSGGGGGYYSSQQTSQTSCAPQQSYGGGSSGGGGSCGGG---------SSGGGGGGG 401

[Close]
BLAST of Csa4G297480 vs. Swiss-Prot
Match: GRP1_PETHY (Glycine-rich cell wall structural protein 1 OS=Petunia hybrida GN=GRP-1 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.6e-06
Identity = 27/53 (50.94%), Postives = 27/53 (50.94%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGG 83
           G   SGGG    GG+ H GGF    GG    V    +GGGG G GGG GGGGG
Sbjct: 215 GGGGSGGGGGIGGGSGHGGGFGA-GGGVGGGVGGGAAGGGGGGGGGGGGGGGG 266


HSP 2 Score: 47.0 bits (110), Expect = 1.2e-04
Identity = 27/53 (50.94%), Postives = 26/53 (49.06%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGG 83
           G    GGG    GG+ H GGF   AGG      V    GGG G GGGAGGGGG
Sbjct: 295 GGFGGGGGGGVGGGSGHGGGFG--AGG-----GVGGGAGGGLGGGGGAGGGGG 340


HSP 3 Score: 45.1 bits (105), Expect = 4.7e-04
Identity = 24/55 (43.64%), Postives = 23/55 (41.82%), Query Frame = 1 

Query: 29  SGASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGGS 84
           +G    GGG    GG    GG   H GG      V    GGG G G G GGGGGS
Sbjct: 165 AGGGVGGGGGFGGGGGGGVGGGSGHGGGFGAGGGVGGGAGGGLGGGVGGGGGGGS 219


HSP 4 Score: 44.3 bits (103), Expect = 8.1e-04
Identity = 25/56 (44.64%), Postives = 25/56 (44.64%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGGSSS 86
           G   +GGG    GG    GGF   AGG A         GGG G GGG GGGGG  +
Sbjct: 91  GGGGAGGGGGLGGGGGAGGGFGGGAGGGA---------GGGLGGGGGLGGGGGGGA 137


HSP 5 Score: 42.7 bits (99), Expect = 2.4e-03
Identity = 25/53 (47.17%), Postives = 24/53 (45.28%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGG 83
           G   +GGG    GGA   GGF   AGG           GGG G GGG GGGGG
Sbjct: 133 GGGGAGGGGGVGGGAGSGGGFG--AGGGV---------GGGAGAGGGVGGGGG 174


HSP 6 Score: 42.4 bits (98), Expect = 3.1e-03
Identity = 26/53 (49.06%), Postives = 25/53 (47.17%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGG 83
           G   +GGG    GGA   GGF   AGG    V      GGG G GGG GGGGG
Sbjct: 133 GGGGAGGGGGVGGGAGSGGGFG--AGGG---VGGGAGAGGGVGGGGGFGGGGG 180


HSP 7 Score: 42.4 bits (98), Expect = 3.1e-03
Identity = 27/54 (50.00%), Postives = 25/54 (46.30%), Query Frame = 1 

Query: 30  GASSSGGGHAHFG-GAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGG 83
           G    GG    FG G    GGF   AGG A        GGGG G GGGAGGGGG
Sbjct: 50  GGGRFGGRGPSFGRGRGAGGGFGGGAGGGA---GGGLGGGGGLGGGGGAGGGGG 100


HSP 8 Score: 38.5 bits (88), Expect = 4.4e-02
Identity = 26/58 (44.83%), Postives = 25/58 (43.10%), Query Frame = 1 

Query: 30  GASSSGGGHAHFG-GAAHAGGFHHHAGGHAHHVAVAHSG---GGGHGCGGGAGGGGGS 84
           G    GG    FG G    GGF   AGG A        G   GGG G GGG GGGGG+
Sbjct: 50  GGGRFGGRGPSFGRGRGAGGGFGGGAGGGAGGGLGGGGGLGGGGGAGGGGGLGGGGGA 107


HSP 9 Score: 36.2 bits (82), Expect = 2.2e-01
Identity = 23/56 (41.07%), Postives = 23/56 (41.07%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAH--AGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGGS 84
           G    GG    FGG A   AGG     GG          GGGG G G G+GGG G+
Sbjct: 100 GLGGGGGAGGGFGGGAGGGAGGGLGGGGGLGGGGGGGAGGGGGVGGGAGSGGGFGA 155

[Close]
BLAST of Csa4G297480 vs. Swiss-Prot
Match: DRM2_PEA (Dormancy-associated protein 2 OS=Pisum sativum GN=DRM2 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 8.7e-06
Identity = 26/64 (40.62%), Postives = 32/64 (50.00%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVA--------HSGGGGHGCGGGAGGGG 86
           G   +GGG  H GG  + GG  +H GG  +H            H+GGGG+  GGG GG G
Sbjct: 63  GGGYNGGGGYHNGGGGYNGGGGYHNGGGGYHNGGGGYNGGGGYHNGGGGYHGGGGHGGHG 122


HSP 2 Score: 45.8 bits (107), Expect = 2.8e-04
Identity = 23/54 (42.59%), Postives = 29/54 (53.70%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHS-GGGGHGCGGGAGGGGG 83
           G   +GGG+ + GG  + GG +H+ GG  +     H+ GGG H  GGG  GGGG
Sbjct: 51  GGYHNGGGYHNGGGGYNGGGGYHNGGGGYNGGGGYHNGGGGYHNGGGGYNGGGG 104


HSP 3 Score: 42.7 bits (99), Expect = 2.4e-03
Identity = 20/47 (42.55%), Postives = 24/47 (51.06%), Query Frame = 1 

Query: 36 GGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGG 83
          GG+   GG  + GG+H+  GG+       + GGG H  GGG  GGGG
Sbjct: 45 GGYGRGGGYHNGGGYHNGGGGY-------NGGGGYHNGGGGYNGGGG 84

[Close]
BLAST of Csa4G297480 vs. Swiss-Prot
Match: DOT1_ARATH (Glycine-rich protein DOT1 OS=Arabidopsis thaliana GN=DOT1 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 8.7e-06
Identity = 27/57 (47.37%), Postives = 27/57 (47.37%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGGSSSA 87
           G   SG G AH GG    GG     GG A        GGGG G GGG GGGGG ++A
Sbjct: 179 GGGGSGEGGAHGGGYGAGGGAGEGYGGGAGAGGHGGGGGGGGGSGGGGGGGGGYAAA 235


HSP 2 Score: 49.7 bits (117), Expect = 1.9e-05
Identity = 24/55 (43.64%), Postives = 27/55 (49.09%), Query Frame = 1 

Query: 29  SGASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGGS 84
           +G    GG    +GG +  GG   + GG A      H GGGG G GGG GGGGG+
Sbjct: 92  AGGGGGGGPGGGYGGGSGEGGGAGYGGGEAG----GHGGGGGGGAGGGGGGGGGA 142


HSP 3 Score: 49.7 bits (117), Expect = 1.9e-05
Identity = 23/48 (47.92%), Postives = 24/48 (50.00%), Query Frame = 1 

Query: 35 GGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGG 83
          GGG  + GG+   GG   H  GH     +   GGGGHG G G GGGGG
Sbjct: 57 GGGSGYGGGSGEGGGAGGHGEGH-----IGGGGGGGHGGGAGGGGGGG 99


HSP 4 Score: 48.1 bits (113), Expect = 5.6e-05
Identity = 25/53 (47.17%), Postives = 26/53 (49.06%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGG 83
           G +  GGG     G AH GG+   AGG A       +G GGHG GGG GGG G
Sbjct: 173 GGNGGGGGGGSGEGGAHGGGYG--AGGGAGEGYGGGAGAGGHGGGGGGGGGSG 223


HSP 5 Score: 43.5 bits (101), Expect = 1.4e-03
Identity = 26/57 (45.61%), Postives = 26/57 (45.61%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAG-GHAHHVAVAHSGGGGHGCGGGAGGGGGSSS 86
           GA   GGG    GG AH GG+    G G         +GG G G GGG GGGGG  S
Sbjct: 131 GAGGGGGG----GGGAHGGGYGGGQGAGAGGGYGGGGAGGHGGGGGGGNGGGGGGGS 183


HSP 6 Score: 30.0 bits (66), Expect = 1.6e+01
Identity = 12/23 (52.17%), Postives = 13/23 (56.52%), Query Frame = 1 

Query: 61 VAVAHSGGGGHGCGGGAGGGGGS 84
          V +    GGG G GGG+G GGG+
Sbjct: 50 VGIGGGPGGGSGYGGGSGEGGGA 72

[Close]
BLAST of Csa4G297480 vs. TAIR10
Match: AT2G05440.2 (AT2G05440.2 GLYCINE RICH PROTEIN 9)

HSP 1 Score: 53.1 bits (126), Expect = 9.8e-08
Identity = 26/53 (49.06%), Postives = 27/53 (50.94%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGG 83
           G    GGGH   GG  + GG  H+ GG  H+      GGGGHG GG  GGGGG
Sbjct: 80  GHYGGGGGHYGGGGGHYGGGGGHYGGGGGHY----GGGGGGHGGGGHYGGGGG 128


HSP 2 Score: 51.6 bits (122), Expect = 2.9e-07
Identity = 26/55 (47.27%), Postives = 27/55 (49.09%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAH--SGGGGHGCGGGAGGGGG 83
           G    GGGH   GG  + GG  H+ GG   H    H   GGGG+G GGG  GGGG
Sbjct: 87  GHYGGGGGHYGGGGGHYGGGGGHYGGGGGGHGGGGHYGGGGGGYGGGGGHHGGGG 141


HSP 3 Score: 30.4 bits (67), Expect = 6.8e-01
Identity = 12/15 (80.00%), Postives = 10/15 (66.67%), Query Frame = 1 

Query: 68 GGGHGCGGGAGGGGG 83
          GGGHG  GG GGGGG
Sbjct: 44 GGGHGGHGGHGGGGG 58

[Close]
BLAST of Csa4G297480 vs. TAIR10
Match: AT2G36120.1 (AT2G36120.1 Glycine-rich protein family)

HSP 1 Score: 50.8 bits (120), Expect = 4.9e-07
Identity = 27/57 (47.37%), Postives = 27/57 (47.37%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGGSSSA 87
           G   SG G AH GG    GG     GG A        GGGG G GGG GGGGG ++A
Sbjct: 179 GGGGSGEGGAHGGGYGAGGGAGEGYGGGAGAGGHGGGGGGGGGSGGGGGGGGGYAAA 235


HSP 2 Score: 49.7 bits (117), Expect = 1.1e-06
Identity = 24/55 (43.64%), Postives = 27/55 (49.09%), Query Frame = 1 

Query: 29  SGASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGGS 84
           +G    GG    +GG +  GG   + GG A      H GGGG G GGG GGGGG+
Sbjct: 92  AGGGGGGGPGGGYGGGSGEGGGAGYGGGEAG----GHGGGGGGGAGGGGGGGGGA 142


HSP 3 Score: 49.7 bits (117), Expect = 1.1e-06
Identity = 23/48 (47.92%), Postives = 24/48 (50.00%), Query Frame = 1 

Query: 35 GGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGG 83
          GGG  + GG+   GG   H  GH     +   GGGGHG G G GGGGG
Sbjct: 57 GGGSGYGGGSGEGGGAGGHGEGH-----IGGGGGGGHGGGAGGGGGGG 99


HSP 4 Score: 48.1 bits (113), Expect = 3.2e-06
Identity = 25/53 (47.17%), Postives = 26/53 (49.06%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGG 83
           G +  GGG     G AH GG+   AGG A       +G GGHG GGG GGG G
Sbjct: 173 GGNGGGGGGGSGEGGAHGGGYG--AGGGAGEGYGGGAGAGGHGGGGGGGGGSG 223


HSP 5 Score: 43.5 bits (101), Expect = 7.8e-05
Identity = 26/57 (45.61%), Postives = 26/57 (45.61%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAG-GHAHHVAVAHSGGGGHGCGGGAGGGGGSSS 86
           GA   GGG    GG AH GG+    G G         +GG G G GGG GGGGG  S
Sbjct: 131 GAGGGGGG----GGGAHGGGYGGGQGAGAGGGYGGGGAGGHGGGGGGGNGGGGGGGS 183


HSP 6 Score: 30.0 bits (66), Expect = 8.9e-01
Identity = 12/23 (52.17%), Postives = 13/23 (56.52%), Query Frame = 1 

Query: 61 VAVAHSGGGGHGCGGGAGGGGGS 84
          V +    GGG G GGG+G GGG+
Sbjct: 50 VGIGGGPGGGSGYGGGSGEGGGA 72

[Close]
BLAST of Csa4G297480 vs. TAIR10
Match: AT5G46730.1 (AT5G46730.1 glycine-rich protein)

HSP 1 Score: 50.1 bits (118), Expect = 8.3e-07
Identity = 26/60 (43.33%), Postives = 28/60 (46.67%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAG-----GHAHHVAVAHSGGGGHGCGGGAGGGGGSS 85
           GA   GGGH   GG   AGG H  +G     G       +H G GG+G GGG G GGG +
Sbjct: 163 GAYGGGGGHGGGGGGGSAGGAHGGSGYGGGEGGGAGGGGSHGGAGGYGGGGGGGSGGGGA 222


HSP 2 Score: 48.1 bits (113), Expect = 3.2e-06
Identity = 25/52 (48.08%), Postives = 26/52 (50.00%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGG 82
           G   SGGG A+ GG AH GG+    GG         +GG G G GGG GGGG
Sbjct: 213 GGGGSGGGGAYGGGGAHGGGYGS-GGGEGGGYGGGAAGGYGGGGGGGEGGGG 263


HSP 3 Score: 44.7 bits (104), Expect = 3.5e-05
Identity = 25/55 (45.45%), Postives = 29/55 (52.73%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGGSS 85
           G ++S GG+A   G    GG+   AGGHA        GGGG    GG+GGGGGS+
Sbjct: 92  GGAASSGGYASGAGEGGGGGYGGAAGGHA--------GGGG----GGSGGGGGSA 134


HSP 4 Score: 43.9 bits (102), Expect = 6.0e-05
Identity = 26/75 (34.67%), Postives = 28/75 (37.33%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHH-----------------------HAGGHAHHVAVAHS 82
           G   SGGG A+ GG AH GG+                           GG ++       
Sbjct: 213 GGGGSGGGGAYGGGGAHGGGYGSGGGEGGGYGGGAAGGYGGGGGGGEGGGGSYGGEHGGG 272


HSP 5 Score: 31.6 bits (70), Expect = 3.1e-01
Identity = 12/14 (85.71%), Postives = 11/14 (78.57%), Query Frame = 1 

Query: 66 SGGGGHGCGGGAGG 80
          SGGGGHG GGG+GG
Sbjct: 34 SGGGGHGGGGGSGG 47

[Close]
BLAST of Csa4G297480 vs. TAIR10
Match: AT2G05580.1 (AT2G05580.1 Glycine-rich protein family)

HSP 1 Score: 49.3 bits (116), Expect = 1.4e-06
Identity = 25/57 (43.86%), Postives = 24/57 (42.11%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGGSSSA 87
           G     GG  H GG    GG  H  GG   HV     GGGG G GGG  GGGG   +
Sbjct: 238 GGGGGQGGGGHKGGGGGQGG--HKGGGGGGHVGGGGRGGGGGGRGGGGSGGGGGGGS 292


HSP 2 Score: 48.9 bits (115), Expect = 1.9e-06
Identity = 26/58 (44.83%), Postives = 24/58 (41.38%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAGG----HAHHVAVAHSGGGGHGCGGGAGGGGGS 84
           G     GGH   GG    GG H   GG    H       H GGGG G GGG  GGGGS
Sbjct: 227 GGGGGQGGHKGGGGGGQGGGGHKGGGGGQGGHKGGGGGGHVGGGGRGGGGGGRGGGGS 284


HSP 3 Score: 45.1 bits (105), Expect = 2.7e-05
Identity = 23/53 (43.40%), Postives = 22/53 (41.51%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGG 83
           G    GGG  H GG    GG     GG +        GGGG G G G GGGGG
Sbjct: 256 GGHKGGGGGGHVGGGGRGGGGGGRGGGGS-------GGGGGGGSGRGGGGGGG 301


HSP 4 Score: 42.0 bits (97), Expect = 2.3e-04
Identity = 23/53 (43.40%), Postives = 21/53 (39.62%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGG 83
           G     GGH   GG    GG H   GG          GGGG G GG  GGGGG
Sbjct: 203 GGGGGQGGHKGGGGGGGQGG-HKGGGGGGGQGGHKGGGGGGQGGGGHKGGGGG 254


HSP 5 Score: 39.7 bits (91), Expect = 1.1e-03
Identity = 22/53 (41.51%), Postives = 20/53 (37.74%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGG 83
           G    GG   H GG    G   H  GG        H  GGG G GG  GGGGG
Sbjct: 213 GGGGGGGQGGHKGGGGGGGQGGHKGGGGGGQGGGGHK-GGGGGQGGHKGGGGG 264


HSP 6 Score: 37.7 bits (86), Expect = 4.3e-03
Identity = 22/55 (40.00%), Postives = 20/55 (36.36%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFH--HHAGGHAHHVAVAHSGGGGHGCGGGAGGGGG 83
           G    GGG    G     GG    H  GG          GGGG G GG  GGGGG
Sbjct: 187 GGQKGGGGRGQGGMKGGGGGGQGGHKGGGGGGGQGGHKGGGGGGGQGGHKGGGGG 241


HSP 7 Score: 35.8 bits (81), Expect = 1.6e-02
Identity = 22/53 (41.51%), Postives = 20/53 (37.74%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGG 83
           G    GGG    GG    GG     GG          GGGG G GG  GGGGG
Sbjct: 160 GGQKGGGGQ---GGQKGGGGQGGQKGGGGQG---GQKGGGGRGQGGMKGGGGG 206


HSP 8 Score: 34.3 bits (77), Expect = 4.7e-02
Identity = 22/54 (40.74%), Postives = 20/54 (37.04%), Query Frame = 1 

Query: 30  GASSSGGGHA-HFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGG 83
           G    GGG     GG    GG     GG          GGGG G GG  GGGGG
Sbjct: 108 GQKGGGGGQGGQKGGGGGQGGQKGGGGGGQG----GQKGGGGGGQGGQKGGGGG 157


HSP 9 Score: 30.4 bits (67), Expect = 6.8e-01
Identity = 17/41 (41.46%), Postives = 15/41 (36.59%), Query Frame = 1 

Query: 42  GGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGG 83
           GG     G     GG          GGGG G GG  GGGGG
Sbjct: 78  GGIGRGQGGQKGGGGGGQG---GQKGGGGGGQGGQKGGGGG 115

[Close]
BLAST of Csa4G297480 vs. TAIR10
Match: AT2G05510.1 (AT2G05510.1 Glycine-rich protein family)

HSP 1 Score: 48.9 bits (115), Expect = 1.9e-06
Identity = 25/62 (40.32%), Postives = 27/62 (43.55%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHH---------HAGGHAHHVAVAHSGGGGHGCGGGAGGG 83
           G     GG  H+GG  H  G H+         + GGH  H    + GGGGH  GGG  GG
Sbjct: 45  GGHGGHGGGGHYGGGGHGHGGHNGGGGHGLDGYGGGHGGH----YGGGGGHYGGGGGHGG 102


HSP 2 Score: 48.5 bits (114), Expect = 2.4e-06
Identity = 28/62 (45.16%), Postives = 28/62 (45.16%), Query Frame = 1 

Query: 30  GASSSGGGHAHFG---GAAHA----GGFH--HHAGGHAHHVAVAHSGGGGHGCGGGAGGG 83
           G    GGGH H G   G  H     GG H  H+ GG  H+      GGGGH  GGG  GG
Sbjct: 53  GGHYGGGGHGHGGHNGGGGHGLDGYGGGHGGHYGGGGGHYGGGGGHGGGGHYGGGGHHGG 112

[Close]
BLAST of Csa4G297480 vs. NCBI nr
Match: gi|504154590|ref|XP_004589250.1| (PREDICTED: loricrin [Ochotona princeps])

HSP 1 Score: 58.9 bits (141), Expect = 5.1e-06
Identity = 31/58 (53.45%), Postives = 33/58 (56.90%), Query Frame = 1 

Query: 33  SSGGGHAHFGGAAHA----GGFHHHAGGHAHHVAVAHSG-GGGHGCGGGAGGGGGSSS 86
           SSGGG    GG  ++    GG  H  GG  H     HSG GGGH CGGG  GGGGSSS
Sbjct: 89  SSGGGGGSSGGGCYSSCGSGGGGHSGGGGGHSCGGGHSGSGGGHSCGGGHSGGGGSSS 146

[Close]
BLAST of Csa4G297480 vs. NCBI nr
Match: gi|504154590|ref|XP_004589250.1| (PREDICTED: loricrin [Ochotona princeps])

HSP 1 Score: 54.7 bits (130), Expect = 9.6e-05
Identity = 31/62 (50.00%), Postives = 34/62 (54.84%), Query Frame = 1 

Query: 29  SGASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGG-HGCGGGAGGG-----GG 85
           S   S GGGH+  GG    GG H  +GG  H     HSGGGG   CGGG+GGG     GG
Sbjct: 103 SSCGSGGGGHSGGGGGHSCGGGHSGSGG-GHSCGGGHSGGGGSSSCGGGSGGGVKYYVGG 162


HSP 2 Score: 47.4 bits (111), Expect = 1.5e-02
Identity = 26/62 (41.94%), Postives = 33/62 (53.23%), Query Frame = 1 

Query: 30  GASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSG----GGGHGCGGGAGGGGGSSS 88
           G+SS GGG +  GG++  GG     GG +H       G    GGG  CGGG+GG  G  S
Sbjct: 188 GSSSCGGGSSGGGGSSCGGG---SGGGSSHPYQCQSYGGGSSGGGSSCGGGSGGYSGGGS 246


HSP 3 Score: 47.0 bits (110), Expect = 2.0e-02
Identity = 26/68 (38.24%), Postives = 36/68 (52.94%), Query Frame = 1 

Query: 26  CWTSGASSSGGGHAHFGGAA-HAGGFHHHAGGHAHHVAVAHSG-----GGGHGCGGGAGG 85
           C + G  SSGGG +  GG+  ++GG     GG++   +    G     GGG  CGGG+GG
Sbjct: 218 CQSYGGGSSGGGSSCGGGSGGYSGGGSSCGGGYSGSGSSCGGGSGGYSGGGSSCGGGSGG 277

Query: 86  GGGSSSAC 88
             G  S+C
Sbjct: 278 YSGGGSSC 285


HSP 4 Score: 44.7 bits (104), Expect = 9.9e-02
Identity = 21/61 (34.43%), Postives = 28/61 (45.90%), Query Frame = 1 

Query: 27  WTSGASSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHSGGGGHGCGGGAGGGGGSSSA 86
           +  G+S  GG     GG  ++      +GG +       SGGGG  CGGG+GGG      
Sbjct: 158 YVGGSSCGGGSSGGSGGVCYSSCGGGGSGGGSSSCGGGSSGGGGSSCGGGSGGGSSHPYQ 217

Query: 87  C 88
           C
Sbjct: 218 C 218


HSP 5 Score: 41.6 bits (96), Expect = 8.4e-01
Identity = 23/57 (40.35%), Postives = 28/57 (49.12%), Query Frame = 1 

Query: 32  SSSGGGHAHFGGAAHAGGFHHHAGGHAHHVAVAHS---GGGGHGCGGGAGGGGGSSS 86
           SS GGG +  G +   GG    +GG  +      S    GGG  CGGG+ GG G SS
Sbjct: 325 SSCGGGSSGGGSSCGGGGSSGGSGGGCYSSCGGGSSGGSGGGSSCGGGSSGGSGGSS 381

The following BLAST results are available for this feature:
BLAST of Csa4G297480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LORI_MOUSE6.0e-0744.26Loricrin OS=Mus musculus GN=Lor PE=2 SV=2[more]
GRP1_PETHY6.6e-0650.94Glycine-rich cell wall structural protein 1 OS=Petunia hybrida GN=GRP-1 PE=1 SV=... [more]
DRM2_PEA8.7e-0640.63Dormancy-associated protein 2 OS=Pisum sativum GN=DRM2 PE=2 SV=1[more]
DOT1_ARATH8.7e-0647.37Glycine-rich protein DOT1 OS=Arabidopsis thaliana GN=DOT1 PE=2 SV=1[more]
BLAST of Csa4G297480 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G05440.29.8e-0849.06 GLYCINE RICH PROTEIN 9[more]
AT2G36120.14.9e-0747.37 Glycine-rich protein family[more]
AT5G46730.18.3e-0743.33 glycine-rich protein[more]
AT2G05580.11.4e-0643.86 Glycine-rich protein family[more]
AT2G05510.11.9e-0640.32 Glycine-rich protein family[more]
BLAST of Csa4G297480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|504154590|ref|XP_004589250.1|5.1e-0653.45PREDICTED: loricrin [Ochotona princeps][more]
gi|504154590|ref|XP_004589250.1|9.6e-0550.00PREDICTED: loricrin [Ochotona princeps][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G297480.1Csa4G297480.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G297480Wax gourdcuwgoB391
Csa4G297480Cucumber (Gy14) v1cgycuB055
Csa4G297480Cucumber (Gy14) v1cgycuB269
Csa4G297480Cucurbita maxima (Rimu)cmacuB668
Csa4G297480Cucurbita maxima (Rimu)cmacuB859
Csa4G297480Cucurbita moschata (Rifu)cmocuB657
Csa4G297480Cucurbita moschata (Rifu)cmocuB847
Csa4G297480Melon (DHL92) v3.5.1cumeB294
Csa4G297480Melon (DHL92) v3.5.1cumeB323
Csa4G297480Watermelon (Charleston Gray)cuwcgB301
Csa4G297480Watermelon (97103) v1cuwmB338
Csa4G297480Cucurbita pepo (Zucchini)cpecuB070
Csa4G297480Cucurbita pepo (Zucchini)cpecuB496
Csa4G297480Bottle gourd (USVL1VR-Ls)culsiB248
Csa4G297480Cucumber (Gy14) v2cgybcuB123
Csa4G297480Cucumber (Gy14) v2cgybcuB167
Csa4G297480Melon (DHL92) v3.6.1cumedB278
Csa4G297480Melon (DHL92) v3.6.1cumedB310
Csa4G297480Silver-seed gourdcarcuB0585
Csa4G297480Silver-seed gourdcarcuB0607
Csa4G297480Watermelon (97103) v2cuwmbB298