Csa4G293040 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G293040
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 11557078 .. 11558712 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTTGAGGACATGTTCGCTACAACAAAACTAAAATTTAGTTAAAATGAGTATTATTTAATATACATTGTAATCCGACACTTTAAAATTAATATAAAAATACAAAAATCGAGAATGTGAGAAGACACGTGTCTCAACTCCTTTAATGAATTCGTCGTTGATCTAAACAATCTTAAAATTTATTAAAAAACACACAACTTAGCTATAATAGGAGTGTCTAGATGCCAATTTTAATCCATCGCTATATTATTAATAAGAAATTTCAATAAACGTATCACTTGAGATAATGGAATGCATGAATAATTTTGAAAGGAGTTGAGTTATAAGCTATCCATGATATTTTGGAGTTAAATTTAAGTTAGAAATATATAAAATGCAAAATTGGTTTAATGAGGAGAGTGAAAGAAAGTATAATGCGTTTGTGTGTATTTTTTTTTTGAATCATTATCCAACCGAAAATGACGGAAAATTAGGGAAATACTCGACGTCCGTGAAAACGACGTTATCTTTTGGTAAATCGGCTCTAAAATGAAGCCACGTGTCCAGAGTAAATCTCCCGGATCCATACAATCTCTTCTAAGCTCCCGGCTTTAGATTTCGTTCCGCTTCTAAAACCCGTGGCCCCAAGTTTTCAGCCACGTTGGAAATATCTTCGTCCTGCGTGGCACATTTGGACCATCCCACAGCTTCAATTTGTCCACGTCATCCCCCCGCGTACTCTCTGCAATATCTTCTTCCATTTTTTTCTTTAATTTTTCTCTTCCAATTAGTTCCGAAGAGAAAAGAAAAAAAGAAAAAAAACTGAAAATTCGGCCATTACCCTCTTTCTTCAACCTCCAGCCTCCTTGTTTCCGAGGCTGGTCAAGCAACTTCGTCACTGCAACTTTACTCGCAAACAACATAGAACGCGAAATTCAGCGATTTCTGAATTGGAGATAAAGTTAAGCTTTGAGATTTTACGTTTCTTCAGACCCCCCTTTTCCCCTCACCTCCAGCCTCCAGATCGATCTGGAAGCTCTGATGGTGATGTTCTTCATACGCGGTTCTGTTTCTAATTCTACTGCTGTTTTAATTCGTCCCTACTCGTTCTTTTGATGATTCATAGTTATTGTTTCATTTGCTTTTTCTTTGTTTTTTTTTTTTTTCAGTAATAATCAATAAGATTCTACATCAAGTTTGCATATGAGAAGTCTCTGTTTATTTTATAGATTACTACGTTGATCTTTCTAGGTAATTTGTGGATCGGTCTATTGAGGTTAATGTCAGGAGATTCTCGGTTTGCTTCACTTTAGGGTTTGATAAAAAAAAATCTTTTTTTTTAAAAAAATTTGATGGGTTCAGTCATTATATTCACTTTCTTGCTGCTGCTAGGAATAGGATTAATTGGTTAACGTCTGCAAACATTTGTTTTTCTTGTTCGTGTTATTCTTGTTTTTAATGTATAATGGTTAGGCTTTTAAGGTACTGTGGTTTTTCCAGGGAGCAGGCTACCATTGGATTTTGCGGCTCCTTGTTGGATTTAGAATACGCACTGAATCTGTCTCCAATCCCCCACCGTAGTCTGTGTGGACTTCATGGTCGTTTCCACTTGTTTAAGTTGAAGGGTGCCTTTGGGTTCTTGAACAACGAATAG

mRNA sequence

ATGTTCCGAAGAGAAAAGAAAAAAAGAAAAAAAACTGAAAATTCGGCCATTACCCTCTTTCTTCAACCTCCAGCCTCCTTGTTTCCGAGGCTGGTCAAGCAACTTCGTCACTGCAACTTTACTCGCAAACAACATAGAACGCGAAATTCAGCGATTTCTGAATTGGAGATAAAGTTAAGCTTTGAGATTTTACGTTTCTTCAGACCCCCCTTTTCCCCTCACCTCCAGCCTCCAGATCGATCTGGAAGCTCTGATGGTGATGTTCTTCATACGCGGGAGCAGGCTACCATTGGATTTTGCGGCTCCTTGTTGGATTTAGAATACGCACTGAATCTGTCTCCAATCCCCCACCGTAGTCTGTGTGGACTTCATGGTCGTTTCCACTTGTTTAAGTTGAAGGGTGCCTTTGGGTTCTTGAACAACGAATAG

Coding sequence (CDS)

ATGTTCCGAAGAGAAAAGAAAAAAAGAAAAAAAACTGAAAATTCGGCCATTACCCTCTTTCTTCAACCTCCAGCCTCCTTGTTTCCGAGGCTGGTCAAGCAACTTCGTCACTGCAACTTTACTCGCAAACAACATAGAACGCGAAATTCAGCGATTTCTGAATTGGAGATAAAGTTAAGCTTTGAGATTTTACGTTTCTTCAGACCCCCCTTTTCCCCTCACCTCCAGCCTCCAGATCGATCTGGAAGCTCTGATGGTGATGTTCTTCATACGCGGGAGCAGGCTACCATTGGATTTTGCGGCTCCTTGTTGGATTTAGAATACGCACTGAATCTGTCTCCAATCCCCCACCGTAGTCTGTGTGGACTTCATGGTCGTTTCCACTTGTTTAAGTTGAAGGGTGCCTTTGGGTTCTTGAACAACGAATAG

Protein sequence

MFRREKKKRKKTENSAITLFLQPPASLFPRLVKQLRHCNFTRKQHRTRNSAISELEIKLSFEILRFFRPPFSPHLQPPDRSGSSDGDVLHTREQATIGFCGSLLDLEYALNLSPIPHRSLCGLHGRFHLFKLKGAFGFLNNE*
Homology
[Close]
BLAST of Csa4G293040 vs. TrEMBL
Match: A0A0A0KZE3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G293040 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 1.4e-76
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MFRREKKKRKKTENSAITLFLQPPASLFPRLVKQLRHCNFTRKQHRTRNSAISELEIKLS 60
           MFRREKKKRKKTENSAITLFLQPPASLFPRLVKQLRHCNFTRKQHRTRNSAISELEIKLS
Sbjct: 1   MFRREKKKRKKTENSAITLFLQPPASLFPRLVKQLRHCNFTRKQHRTRNSAISELEIKLS 60

Query: 61  FEILRFFRPPFSPHLQPPDRSGSSDGDVLHTREQATIGFCGSLLDLEYALNLSPIPHRSL 120
           FEILRFFRPPFSPHLQPPDRSGSSDGDVLHTREQATIGFCGSLLDLEYALNLSPIPHRSL
Sbjct: 61  FEILRFFRPPFSPHLQPPDRSGSSDGDVLHTREQATIGFCGSLLDLEYALNLSPIPHRSL 120

Query: 121 CGLHGRFHLFKLKGAFGFLNNE 143
           CGLHGRFHLFKLKGAFGFLNNE
Sbjct: 121 CGLHGRFHLFKLKGAFGFLNNE 142

[Close]
BLAST of Csa4G293040 vs. NCBI nr
Match: gi|700199036|gb|KGN54194.1| (hypothetical protein Csa_4G293040 [Cucumis sativus])

HSP 1 Score: 293.5 bits (750), Expect = 2.0e-76
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MFRREKKKRKKTENSAITLFLQPPASLFPRLVKQLRHCNFTRKQHRTRNSAISELEIKLS 60
           MFRREKKKRKKTENSAITLFLQPPASLFPRLVKQLRHCNFTRKQHRTRNSAISELEIKLS
Sbjct: 1   MFRREKKKRKKTENSAITLFLQPPASLFPRLVKQLRHCNFTRKQHRTRNSAISELEIKLS 60

Query: 61  FEILRFFRPPFSPHLQPPDRSGSSDGDVLHTREQATIGFCGSLLDLEYALNLSPIPHRSL 120
           FEILRFFRPPFSPHLQPPDRSGSSDGDVLHTREQATIGFCGSLLDLEYALNLSPIPHRSL
Sbjct: 61  FEILRFFRPPFSPHLQPPDRSGSSDGDVLHTREQATIGFCGSLLDLEYALNLSPIPHRSL 120

Query: 121 CGLHGRFHLFKLKGAFGFLNNE 143
           CGLHGRFHLFKLKGAFGFLNNE
Sbjct: 121 CGLHGRFHLFKLKGAFGFLNNE 142

The following BLAST results are available for this feature:
BLAST of Csa4G293040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZE3_CUCSA1.4e-76100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G293040 PE=4 SV=1[more]
BLAST of Csa4G293040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199036|gb|KGN54194.1|2.0e-76100.00hypothetical protein Csa_4G293040 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU099650cucumber EST collection version 3.0transcribed_cluster
CU110549cucumber EST collection version 3.0transcribed_cluster
CU158909cucumber EST collection version 3.0transcribed_cluster
CU167266cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G293040.1Csa4G293040.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU099650CU099650transcribed_cluster
CU158909CU158909transcribed_cluster
CU167266CU167266transcribed_cluster
CU110549CU110549transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G293040Melon (DHL92) v3.5.1cumeB294
Csa4G293040Melon (DHL92) v3.5.1cumeB323
Csa4G293040Watermelon (Charleston Gray)cuwcgB274
Csa4G293040Watermelon (Charleston Gray)cuwcgB301
Csa4G293040Watermelon (97103) v1cuwmB292
Csa4G293040Watermelon (97103) v1cuwmB338
Csa4G293040Cucurbita pepo (Zucchini)cpecuB070
Csa4G293040Cucurbita pepo (Zucchini)cpecuB414
Csa4G293040Cucurbita pepo (Zucchini)cpecuB496
Csa4G293040Cucurbita pepo (Zucchini)cpecuB619
Csa4G293040Cucurbita pepo (Zucchini)cpecuB871
Csa4G293040Bottle gourd (USVL1VR-Ls)culsiB248
Csa4G293040Bottle gourd (USVL1VR-Ls)culsiB278
Csa4G293040Cucumber (Gy14) v2cgybcuB123
Csa4G293040Cucumber (Gy14) v2cgybcuB167
Csa4G293040Cucumber (Gy14) v2cgybcuB221
Csa4G293040Cucumber (Gy14) v2cgybcuB271
Csa4G293040Melon (DHL92) v3.6.1cumedB261
Csa4G293040Melon (DHL92) v3.6.1cumedB278
Csa4G293040Melon (DHL92) v3.6.1cumedB310
Csa4G293040Silver-seed gourdcarcuB0178
Csa4G293040Silver-seed gourdcarcuB0449
Csa4G293040Silver-seed gourdcarcuB0947
Csa4G293040Silver-seed gourdcarcuB1013
Csa4G293040Watermelon (97103) v2cuwmbB274
Csa4G293040Watermelon (97103) v2cuwmbB298
Csa4G293040Wax gourdcuwgoB357
Csa4G293040Wax gourdcuwgoB407
Csa4G293040Cucumber (Chinese Long) v2cucuB092
Csa4G293040Cucumber (Chinese Long) v2cucuB137
Csa4G293040Cucumber (Chinese Long) v2cucuB138
Csa4G293040Cucumber (Chinese Long) v2cucuB145
Csa4G293040Cucumber (Gy14) v1cgycuB055
Csa4G293040Cucumber (Gy14) v1cgycuB250
Csa4G293040Cucumber (Gy14) v1cgycuB437
Csa4G293040Cucurbita maxima (Rimu)cmacuB264
Csa4G293040Cucurbita maxima (Rimu)cmacuB668
Csa4G293040Cucurbita maxima (Rimu)cmacuB719
Csa4G293040Cucurbita maxima (Rimu)cmacuB837
Csa4G293040Cucurbita maxima (Rimu)cmacuB859
Csa4G293040Cucurbita moschata (Rifu)cmocuB249
Csa4G293040Cucurbita moschata (Rifu)cmocuB657
Csa4G293040Cucurbita moschata (Rifu)cmocuB711
Csa4G293040Cucurbita moschata (Rifu)cmocuB825
Csa4G293040Cucurbita moschata (Rifu)cmocuB847