Csa4G287570 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G287570
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 11173070 .. 11173456 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCAGAGGTCTCATAAGCCTCTCCAGCGGAAGTATCATATCTTCATGGTTCATTGTGGAGTTGAACACAACAAAAAATTGAAACTAAAACTGCTTGCACTTTATTTATTATTATTATTTTTTCTTGAACTCCAAATTCTGTTTTGTTTCAGCTTTCCCCAAAATGGATGCAATCAGATAGTCTTCAACCAAAGATTTGGTTTCTCAACAATCTTATCCATCCAAATTGTGTACATGCACCTTCACCGGAGAAGACAGGAAAATAATAGAATAGAATATTCATCTGCCGTTAGACAGGATAGTGAAGTTGGAGATCTTGGATTTTCCAAAGGATTAGCCATCAATGGTTATGGAGTTCCATTTCTTTTTGCACATCTAGTCTAA

mRNA sequence

ATGAAGCAGAGGTCTCATAAGCCTCTCCAGCGGAACTTTCCCCAAAATGGATGCAATCAGATAGTCTTCAACCAAAGATTTGGTTTCTCAACAATCTTATCCATCCAAATTGTGTACATGCACCTTCACCGGAGAAGACAGGAAAATAATAGAATAGAATATTCATCTGCCGTTAGACAGGATAGTGAAGTTGGAGATCTTGGATTTTCCAAAGGATTAGCCATCAATGGTTATGGAGTTCCATTTCTTTTTGCACATCTAGTCTAA

Coding sequence (CDS)

ATGAAGCAGAGGTCTCATAAGCCTCTCCAGCGGAACTTTCCCCAAAATGGATGCAATCAGATAGTCTTCAACCAAAGATTTGGTTTCTCAACAATCTTATCCATCCAAATTGTGTACATGCACCTTCACCGGAGAAGACAGGAAAATAATAGAATAGAATATTCATCTGCCGTTAGACAGGATAGTGAAGTTGGAGATCTTGGATTTTCCAAAGGATTAGCCATCAATGGTTATGGAGTTCCATTTCTTTTTGCACATCTAGTCTAA

Protein sequence

MKQRSHKPLQRNFPQNGCNQIVFNQRFGFSTILSIQIVYMHLHRRRQENNRIEYSSAVRQDSEVGDLGFSKGLAINGYGVPFLFAHLV*
Homology
[Close]
BLAST of Csa4G287570 vs. TrEMBL
Match: A0A0A0KWY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G287570 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.1e-43
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MKQRSHKPLQRNFPQNGCNQIVFNQRFGFSTILSIQIVYMHLHRRRQENNRIEYSSAVRQ 60
          MKQRSHKPLQRNFPQNGCNQIVFNQRFGFSTILSIQIVYMHLHRRRQENNRIEYSSAVRQ
Sbjct: 1  MKQRSHKPLQRNFPQNGCNQIVFNQRFGFSTILSIQIVYMHLHRRRQENNRIEYSSAVRQ 60

Query: 61 DSEVGDLGFSKGLAINGYGVPFLFAHLV 89
          DSEVGDLGFSKGLAINGYGVPFLFAHLV
Sbjct: 61 DSEVGDLGFSKGLAINGYGVPFLFAHLV 88

[Close]
BLAST of Csa4G287570 vs. NCBI nr
Match: gi|700198977|gb|KGN54135.1| (hypothetical protein Csa_4G287570 [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 3.1e-43
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MKQRSHKPLQRNFPQNGCNQIVFNQRFGFSTILSIQIVYMHLHRRRQENNRIEYSSAVRQ 60
          MKQRSHKPLQRNFPQNGCNQIVFNQRFGFSTILSIQIVYMHLHRRRQENNRIEYSSAVRQ
Sbjct: 1  MKQRSHKPLQRNFPQNGCNQIVFNQRFGFSTILSIQIVYMHLHRRRQENNRIEYSSAVRQ 60

Query: 61 DSEVGDLGFSKGLAINGYGVPFLFAHLV 89
          DSEVGDLGFSKGLAINGYGVPFLFAHLV
Sbjct: 61 DSEVGDLGFSKGLAINGYGVPFLFAHLV 88

The following BLAST results are available for this feature:
BLAST of Csa4G287570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWY4_CUCSA2.1e-43100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G287570 PE=4 SV=1[more]
BLAST of Csa4G287570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198977|gb|KGN54135.1|3.1e-43100.00hypothetical protein Csa_4G287570 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G287570.1Csa4G287570.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G287570CsGy4G013080Cucumber (Gy14) v2cgybcuB167
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G287570Cucurbita maxima (Rimu)cmacuB549
Csa4G287570Cucurbita moschata (Rifu)cmocuB538
Csa4G287570Cucurbita moschata (Rifu)cmocuB596
Csa4G287570Melon (DHL92) v3.5.1cumeB295
Csa4G287570Watermelon (Charleston Gray)cuwcgB292
Csa4G287570Watermelon (97103) v1cuwmB347
Csa4G287570Bottle gourd (USVL1VR-Ls)culsiB246
Csa4G287570Melon (DHL92) v3.6.1cumedB279
Csa4G287570Silver-seed gourdcarcuB0552
Csa4G287570Watermelon (97103) v2cuwmbB287
Csa4G287570Wax gourdcuwgoB390