Csa4G269730 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G269730
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Harpin-induced protein-related-like; contains IPR004864 (Late embryogenesis abundant protein, LEA-14)
Location	Chr4 : 10696387 .. 10697198 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCCTTCTCATTCCTCCATTTCTGTTCTATACTGTGTTTGATCTTCCATGGCCGACCGTGTTCACCCCACTCTTAACCCTGATTCCGCTTCTAATAATCCGCTCAAAAGCCCTCCTTCTGCTACCTACGTCATCCAAATCCCCAAAGACCAAGTCTACCGAATTCCTCCTCCTGAAAACGCCGCCCGCTTCAACCTCTACACTCGCCACCACCACCGCCCCTCCCCCTGCCGCCGTTTCCTCTGCTTCATTCTCCTACTCCTCCTCCTCTCGGCCATCACTTCCGCTCTCGTCTTCCTAATCCTCCAACCTGACCTTCCTCGCTTCTCCATTCTCGCTGTATCCATCAGCAGAATCAAACCAAACACCACCTCATTCTCTCCCCAATTCAATGTCACAATACGAGCAGAAAACCACAACAAAAATATCGGAATCTACTACGAGAAAAACAGCACCGTCTCCATGAATTTATCGGATGTGATGCTGTGCGAAGGTGCATTGCCGTTGTTGTACCAGCCACCGAGGAACGTGACGGTAATGAGAGTAAAGGTGAAAGGATCTGGTATCAGATTATCGAGTAGTACGGGTAAAGCATTTGAGGATTGGGAGAAGGAAGGGAAAACACTGAGAATGAAGGTGGATGTGAGAGGTCCAATGAAGATGAAGTTGTACTGGATGGAGATGAGATGGAGGATTAGGGCAAAAGTAACATGCAAGATATTGGTGAAGAAGGAAATGGGGAAGACGAAAGTGATGGAGGAGAAGTGTGATCATAGCATGAAGCTGTGGTAGAAAAACACTATCTGTACCCAT

mRNA sequence

ATGGCCGACCGTGTTCACCCCACTCTTAACCCTGATTCCGCTTCTAATAATCCGCTCAAAAGCCCTCCTTCTGCTACCTACGTCATCCAAATCCCCAAAGACCAAGTCTACCGAATTCCTCCTCCTGAAAACGCCGCCCGCTTCAACCTCTACACTCGCCACCACCACCGCCCCTCCCCCTGCCGCCGTTTCCTCTGCTTCATTCTCCTACTCCTCCTCCTCTCGGCCATCACTTCCGCTCTCGTCTTCCTAATCCTCCAACCTGACCTTCCTCGCTTCTCCATTCTCGCTGTATCCATCAGCAGAATCAAACCAAACACCACCTCATTCTCTCCCCAATTCAATGTCACAATACGAGCAGAAAACCACAACAAAAATATCGGAATCTACTACGAGAAAAACAGCACCGTCTCCATGAATTTATCGGATGTGATGCTGTGCGAAGGTGCATTGCCGTTGTTGTACCAGCCACCGAGGAACGTGACGGTAATGAGAGTAAAGGTGAAAGGATCTGGTATCAGATTATCGAGTAGTACGGGTAAAGCATTTGAGGATTGGGAGAAGGAAGGGAAAACACTGAGAATGAAGGTGGATGTGAGAGGTCCAATGAAGATGAAGTTGTACTGGATGGAGATGAGATGGAGGATTAGGGCAAAAGTAACATGCAAGATATTGGTGAAGAAGGAAATGGGGAAGACGAAAGTGATGGAGGAGAAGTGTGATCATAGCATGAAGCTGTGGTAG

Coding sequence (CDS)

ATGGCCGACCGTGTTCACCCCACTCTTAACCCTGATTCCGCTTCTAATAATCCGCTCAAAAGCCCTCCTTCTGCTACCTACGTCATCCAAATCCCCAAAGACCAAGTCTACCGAATTCCTCCTCCTGAAAACGCCGCCCGCTTCAACCTCTACACTCGCCACCACCACCGCCCCTCCCCCTGCCGCCGTTTCCTCTGCTTCATTCTCCTACTCCTCCTCCTCTCGGCCATCACTTCCGCTCTCGTCTTCCTAATCCTCCAACCTGACCTTCCTCGCTTCTCCATTCTCGCTGTATCCATCAGCAGAATCAAACCAAACACCACCTCATTCTCTCCCCAATTCAATGTCACAATACGAGCAGAAAACCACAACAAAAATATCGGAATCTACTACGAGAAAAACAGCACCGTCTCCATGAATTTATCGGATGTGATGCTGTGCGAAGGTGCATTGCCGTTGTTGTACCAGCCACCGAGGAACGTGACGGTAATGAGAGTAAAGGTGAAAGGATCTGGTATCAGATTATCGAGTAGTACGGGTAAAGCATTTGAGGATTGGGAGAAGGAAGGGAAAACACTGAGAATGAAGGTGGATGTGAGAGGTCCAATGAAGATGAAGTTGTACTGGATGGAGATGAGATGGAGGATTAGGGCAAAAGTAACATGCAAGATATTGGTGAAGAAGGAAATGGGGAAGACGAAAGTGATGGAGGAGAAGTGTGATCATAGCATGAAGCTGTGGTAG

Protein sequence

MADRVHPTLNPDSASNNPLKSPPSATYVIQIPKDQVYRIPPPENAARFNLYTRHHHRPSPCRRFLCFILLLLLLSAITSALVFLILQPDLPRFSILAVSISRIKPNTTSFSPQFNVTIRAENHNKNIGIYYEKNSTVSMNLSDVMLCEGALPLLYQPPRNVTVMRVKVKGSGIRLSSSTGKAFEDWEKEGKTLRMKVDVRGPMKMKLYWMEMRWRIRAKVTCKILVKKEMGKTKVMEEKCDHSMKLW*

Homology

[Close]

BLAST of Csa4G269730 vs. Swiss-Prot
Match: NHL12_ARATH (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.8e-07
Identity = 47/169 (27.81%), Postives = 77/169 (45.56%), Query Frame = 1


Query: 61  CRRFLCFILLLLLLSAITSALVFLILQPDLPRF-----SILAVSISRIKPNTTSFSPQFN 120
           C   + FI+++L    IT  LV++ILQP  PRF     ++ A ++S+  PN    +  F 
Sbjct: 22  CGVIIGFIIIVL----ITIFLVWIILQPTKPRFILQDATVYAFNLSQ--PNL--LTSNFQ 81

Query: 121 VTIRAENHNKNIGIYYEKNSTVSMNLSDVMLCEGALPLLYQPPRNVTVMRVKVKGSGIRL 180
           +TI + N N  IGIYY++    +   +  +    A+P  YQ  +   V    V G+ + +
Sbjct: 82  ITIASRNRNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWSPFVYGNSVPI 141

Query: 181 SSSTGKAFEDWEKEG-KTLRMKVDVRGPMKMKLYWMEMRWRIRAKVTCK 224
           +     A  D +  G  TL ++ D R           +RW++   +T K
Sbjct: 142 APFNAVALGDEQNRGFVTLIIRADGR-----------VRWKVGTLITGK 171

[Close]

BLAST of Csa4G269730 vs. TrEMBL
Match: A0A0A0L0D0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269730 PE=4 SV=1)

HSP 1 Score: 504.2 bits (1297), Expect = 9.0e-140
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 1


Query: 1   MADRVHPTLNPDSASNNPLKSPPSATYVIQIPKDQVYRIPPPENAARFNLYTRHHHRPSP 60
           MADRVHPTLNPDSASNNPLKSPPSATYVIQIPKDQVYRIPPPENAARFNLYTRHHHRPSP
Sbjct: 1   MADRVHPTLNPDSASNNPLKSPPSATYVIQIPKDQVYRIPPPENAARFNLYTRHHHRPSP 60

Query: 61  CRRFLCFILLLLLLSAITSALVFLILQPDLPRFSILAVSISRIKPNTTSFSPQFNVTIRA 120
           CRRFLCFILLLLLLSAITSALVFLILQPDLPRFSILAVSISRIKPNTTSFSPQFNVTIRA
Sbjct: 61  CRRFLCFILLLLLLSAITSALVFLILQPDLPRFSILAVSISRIKPNTTSFSPQFNVTIRA 120

Query: 121 ENHNKNIGIYYEKNSTVSMNLSDVMLCEGALPLLYQPPRNVTVMRVKVKGSGIRLSSSTG 180
           ENHNKNIGIYYEKNSTVSMNLSDVMLCEGALPLLYQPPRNVTVMRVKVKGSGIRLSSSTG
Sbjct: 121 ENHNKNIGIYYEKNSTVSMNLSDVMLCEGALPLLYQPPRNVTVMRVKVKGSGIRLSSSTG 180

Query: 181 KAFEDWEKEGKTLRMKVDVRGPMKMKLYWMEMRWRIRAKVTCKILVKKEMGKTKVMEEKC 240
           KAFEDWEKEGKTLRMKVDVRGPMKMKLYWMEMRWRIRAKVTCKILVKKEMGKTKVMEEKC
Sbjct: 181 KAFEDWEKEGKTLRMKVDVRGPMKMKLYWMEMRWRIRAKVTCKILVKKEMGKTKVMEEKC 240

Query: 241 DHSMKLW 248
           DHSMKLW
Sbjct: 241 DHSMKLW 247

[Close]

BLAST of Csa4G269730 vs. TrEMBL
Match: A0A0A0LX01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G601000 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 3.3e-49
Identity = 109/260 (41.92%), Postives = 168/260 (64.62%), Query Frame = 1


Query: 1   MADRVHPTLN-PDSASNNPLK------SPPSATYVIQIPKDQVYRIPPPENAARFNLYTR 60
           MADRVHPT + P  ++++ L       SPP  TYVIQ+PKDQ+YR+PPPENA RF LYTR
Sbjct: 1   MADRVHPTADSPRPSTSSTLSDTTKPSSPPPGTYVIQLPKDQIYRLPPPENAHRFKLYTR 60

Query: 61  H-HHRPSPCRR----FLCFILLLLLLSAITSALVFLILQPDLPRFSILAVSISRIKPNTT 120
             H R + CR      L  + +L++L  IT A+ + +++P  P +SI A+SIS +   T+
Sbjct: 61  QSHRRRNRCRSCLFCLLAILAILIILLGITLAVFYFVVRPKSPNYSIDAISISGLNNLTS 120

Query: 121 S-FSPQFNVTIRAENHNKNIGIYYEKNSTVSMNLSDVMLCEGALPLLYQPPRNVTVMRVK 180
           S  SP FN+++RA+N NK IGIYY   S+V +  S+  L EG LP  +QP +NV+V+R  
Sbjct: 121 SAISPVFNLSVRADNPNKKIGIYYLTGSSVRIYSSNEKLSEGVLPDFFQPSKNVSVLRAV 180

Query: 181 VKGSGIRLSSSTGKAFEDWEKEGKTLRMKVDVRGPMKMKLYWMEMRWRIRAKVTCKILVK 240
           V+G+G+ LSS       +W K+ + + +KV++  P+K+K+  ++  W+I+ KV C + V 
Sbjct: 181 VRGAGVNLSSGAKNEIIEWVKQ-RAVLLKVEIGVPIKVKIGSVK-SWKIKVKVNCDVTVD 240

Query: 241 KEMGKTKVMEEKCDHSMKLW 248
           +     K++++ CD+S+K+W
Sbjct: 241 ELTAAAKIVKKNCDYSVKIW 258

[Close]

BLAST of Csa4G269730 vs. TrEMBL
Match: M5W0N4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010043mg PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 5.6e-49
Identity = 108/268 (40.30%), Postives = 156/268 (58.21%), Query Frame = 1


Query: 1   MADRVHPTLNPDSASNNPLKS------------PPSATYVIQIPKDQVYRIPPPENAARF 60
           MADRVHP  +P      PL              PP  TYVIQIPKDQVYR+PPPENA+R+
Sbjct: 1   MADRVHPRDSPFHTETTPLSLSRPSPPDSEKPVPPPGTYVIQIPKDQVYRVPPPENASRY 60

Query: 61  NLYTRHHHRPSPCRRFLCFILLLL----LLSAITSALVFLILQPDLPRFSILAVSISRIK 120
             YT    R S C    C+ L LL     LSA  + + +L+++P+ P +S+ +++     
Sbjct: 61  QSYTHRKTRRSSCHCCCCWFLGLLAAIVFLSAAAAGIFYLVVRPEAPNYSVESIAFKGFN 120

Query: 121 PNTTS-----FSPQFNVTIRAENHNKNIGIYYEKNSTVSMNLSDVMLCEGALPLLYQPPR 180
             TTS      SP+ +VT+RA+N NK IGIYYE+ S+V +  SD+ LC+G LP  YQP +
Sbjct: 121 LTTTSSPPSAISPEIHVTVRAQNPNKKIGIYYERESSVKLFYSDIKLCDGVLPAFYQPSK 180

Query: 181 NVTVMRVKVKGSGIRLSSSTGKAFEDWEKEGKTLRMKVDVRGPMKMKLYWMEMRWRIRAK 240
           NVT  R  + GSGI L+S+  K   D +K+GK + +++D+R P+++K+  ++  W I  K
Sbjct: 181 NVTEFRTALTGSGIELTSAVQKGLVDAQKQGK-VPLELDLRAPVRIKVGPIK-TWTITVK 240

Query: 241 VTCKILVKKEMGKTKVMEEKCDHSMKLW 248
           V C + V K      ++   CD+S+  W
Sbjct: 241 VACHLTVNKLTADANIVSRDCDYSVDPW 266

[Close]

BLAST of Csa4G269730 vs. TrEMBL
Match: A0A087GRC4_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA6G240400 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.1e-48
Identity = 109/262 (41.60%), Postives = 162/262 (61.83%), Query Frame = 1


Query: 1   MADRVHPTLNPD---------SASNNPLK-SPPSATYVIQIPKDQVYRIPPPENAARFNL 60
           MA+RV+P  +P          S+   P K +PP +TYVIQ+PKDQ+YRIPPPENA R   
Sbjct: 1   MAERVYPADSPPESGQFSGNFSSGEFPRKPAPPPSTYVIQVPKDQIYRIPPPENAHRLQY 60

Query: 61  YTRHHHRPSPCRRFLCFIL----LLLLLSAITSALVFLILQPDLPRFSILAVSISRIKPN 120
            +R     S CR  +C +L    ++L+L+ I+ A+++L+  P+ PR+S+   S+S I   
Sbjct: 61  LSRKKVNRSRCRCCICSVLATLFIVLVLAGISLAVLYLVFHPEAPRYSVEGFSVSGINLT 120

Query: 121 TTS-FSPQFNVTIRAENHNKNIGIYYEKNSTVSMNLSDVMLCEGALPLLYQPPRNVTVMR 180
           ++S  SP+FNVT+R+ N N  IGIYYEK S+V +  +DV LC GALP  YQPP NVTV++
Sbjct: 121 SSSPISPKFNVTVRSRNGNGKIGIYYEKGSSVDVFYNDVDLCNGALPAFYQPPNNVTVVK 180

Query: 181 VKVKGSGIRLSSSTGKAFEDWEKEGKTLRMKVDVRGPMKMKLYWMEMRWRIRAKVTCKIL 240
             + GS I+L+++T K      +  KTL  K+ +R P+K+KL  ++  W +  KV C + 
Sbjct: 181 TALTGSTIQLTTATRKEM----RNEKTLPFKLKIRAPVKIKLGSVK-TWTLTVKVNCDVT 240

Query: 241 VKKEMGKTKVMEEKCDHSMKLW 248
           V K    ++++  KC H + LW
Sbjct: 241 VDKLTAPSRIVSRKCSHDVDLW 257

[Close]

BLAST of Csa4G269730 vs. TrEMBL
Match: D7LFJ6_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_481588 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.1e-48
Identity = 109/262 (41.60%), Postives = 163/262 (62.21%), Query Frame = 1


Query: 1   MADRVHPTLNPD---------SASNNPLK-SPPSATYVIQIPKDQVYRIPPPENAARFNL 60
           MA+RV+PT +P          S+   P K +PP ATYVIQ+PKDQ+YRIPPPENA R   
Sbjct: 1   MAERVYPTDSPPQSGQFSGNFSSGEFPRKPTPPPATYVIQVPKDQIYRIPPPENAHRLQQ 60

Query: 61  YTRHHHRPSPCR----RFLCFILLLLLLSAITSALVFLILQPDLPRFSILAVSISRIKPN 120
            +R  +  S CR     FL  I +L++L+ I+ A+++LI +P+ P++SI   ++S I  N
Sbjct: 61  LSRKKNNRSTCRCCFCSFLAAIFILIVLAGISLAILYLIYRPEAPKYSIEGFTVSGINLN 120

Query: 121 TTS-FSPQFNVTIRAENHNKNIGIYYEKNSTVSMNLSDVMLCEGALPLLYQPPRNVTVMR 180
           +TS  SP FNVT+R+ N N  IG+YYEK S+V +  +DV LC G +P+ YQP +NVTV+R
Sbjct: 121 STSPISPNFNVTVRSRNGNGKIGVYYEKESSVDVYYNDVDLCNGVMPVFYQPAKNVTVVR 180

Query: 181 VKVKGSGIRLSSSTGKAFEDWEKEGKTLRMKVDVRGPMKMKLYWMEMRWRIRAKVTCKIL 240
           + + GS I+L+S   K   + E   KTL  K+ ++ P+K+K+  ++  W +   V C + 
Sbjct: 181 LALSGSKIQLTSGMRKEMRN-EVSKKTLPFKLKIKAPVKIKVGSVK-TWSMIVNVECDVT 240

Query: 241 VKKEMGKTKVMEEKCDHSMKLW 248
           V K    ++++  KC H + LW
Sbjct: 241 VDKLTAPSRIVSRKCSHDVDLW 260

[Close]

BLAST of Csa4G269730 vs. TAIR10
Match: AT2G27080.1 (AT2G27080.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 191.4 bits (485), Expect = 6.5e-49
Identity = 104/262 (39.69%), Postives = 158/262 (60.31%), Query Frame = 1


Query: 1   MADRVHPTLNPD---------SASNNPLK-SPPSATYVIQIPKDQVYRIPPPENAARFNL 60
           MA+RV+P  +P          S+   P K +PP +TYVIQ+PKDQ+YRIPPPENA RF  
Sbjct: 1   MAERVYPADSPPQSGQFSGNFSSGEFPKKPAPPPSTYVIQVPKDQIYRIPPPENAHRFEQ 60

Query: 61  YTRHHHRPSPCR----RFLCFILLLLLLSAITSALVFLILQPDLPRFSILAVSISRIKPN 120
            +R     S CR     FL  + +L++L+ I+ A+++LI +P+ P++SI   S+S I  N
Sbjct: 61  LSRKKTNRSNCRCCFCSFLAAVFILIVLAGISFAVLYLIYRPEAPKYSIEGFSVSGINLN 120

Query: 121 TTS-FSPQFNVTIRAENHNKNIGIYYEKNSTVSMNLSDVMLCEGALPLLYQPPRNVTVMR 180
           +TS  SP FNVT+R+ N N  IG+YYEK S+V +  +DV +  G +P+ YQP +NVTV++
Sbjct: 121 STSPISPSFNVTVRSRNGNGKIGVYYEKESSVDVYYNDVDISNGVMPVFYQPAKNVTVVK 180

Query: 181 VKVKGSGIRLSSSTGKAFEDWEKEGKTLRMKVDVRGPMKMKLYWMEMRWRIRAKVTCKIL 240
           + + GS I+L+S   K   + E   KT+  K+ ++ P+K+K +     W +   V C + 
Sbjct: 181 LVLSGSKIQLTSGMRKEMRN-EVSKKTVPFKLKIKAPVKIK-FGSVKTWTMIVNVDCDVT 240

Query: 241 VKKEMGKTKVMEEKCDHSMKLW 248
           V K    ++++  KC H + LW
Sbjct: 241 VDKLTAPSRIVSRKCSHDVDLW 260

[Close]

BLAST of Csa4G269730 vs. TAIR10
Match: AT5G21130.1 (AT5G21130.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 151.4 bits (381), Expect = 7.5e-37
Identity = 85/254 (33.46%), Postives = 136/254 (53.54%), Query Frame = 1


Query: 6   HPTLNPDSASNNPLK--------SPPSATYVIQIPKDQVYRIPPPENAARFNLYTRHHHR 65
           HP+L+ + +S++            PP  TYVI++PKDQ+YR+PPPENA R+   +R    
Sbjct: 29  HPSLDTNDSSSSRYSVDSQKSRIGPPPGTYVIKLPKDQIYRVPPPENAHRYEYLSRRKTN 88

Query: 66  PSPCRRFLCF----ILLLLLLSAITSALVFLILQPDLPRFSILAVSISRIKPNTTS-FSP 125
            S CRR LC+    +L++++L+AI     +L+ QP  P+FS+  VS++ I   ++S FSP
Sbjct: 89  KSCCRRCLCYSLSALLIIIVLAAIAFGFFYLVYQPHKPQFSVSGVSVTGINLTSSSPFSP 148

Query: 126 QFNVTIRAENHNKNIGIYYEKNSTVSMNLSDVMLCEGALPLLYQPPRNVTVMRVKVKGSG 185
              + +R++N    +G+ YEK +   +  +   L  G      QP  NVTV+   +KGS 
Sbjct: 149 VIRIKLRSQNVKGKLGLIYEKGNEADVFFNGTKLGNGEFTAFKQPAGNVTVIVTVLKGSS 208

Query: 186 IRLSSSTGKAFEDWEKEGKTLRMKVDVRGPMKMKLYWMEMRWRIRAKVTCKILVKKEMGK 245
           ++L SS+ K   + +K+GK +   + ++ P+K K+      W +   V CKI V K    
Sbjct: 209 VKLKSSSRKELTESQKKGK-VPFGLRIKAPVKFKV-GSVTTWTMTITVDCKITVDKLTAS 268

Query: 246 TKVMEEKCDHSMKL 247
             V  E C+  + L
Sbjct: 269 ATVKTENCETGLSL 280

[Close]

BLAST of Csa4G269730 vs. TAIR10
Match: AT1G54540.1 (AT1G54540.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 94.7 bits (234), Expect = 8.3e-20
Identity = 65/247 (26.32%), Postives = 118/247 (47.77%), Query Frame = 1


Query: 4   RVHPTLNPDSASNNPLKSPPSATYVIQIPKDQVYRIPPPENAARFNLYTRHHHRPSPCRR 63
           ++HP L  ++         P  T ++ + +     IPPP   ++           + C +
Sbjct: 6   KIHPVLQMEANKTKTTTPAPGKTVLLPVQRP----IPPPVIPSK---------NRNMCCK 65

Query: 64  FLCFILLLLLLS----AITSALVFLILQPDLPRFSILAVSISRIKPNTT-SFSPQFNVTI 123
             C++L LL+++    AI  A+V+ +  P LP + + ++ ++ +  N   S S +F V I
Sbjct: 66  IFCWVLSLLVIALIALAIAVAVVYFVFHPKLPSYEVNSLRVTNLGINLDLSLSAEFKVEI 125

Query: 124 RAENHNKNIGIYYEKNSTVSMNLSDVMLCEGALPLLYQPPRNVTVMRVKVKGSGIRLSSS 183
            A N N+ IGIYYEK   + +      LCEG +P  YQ  RNVT + V + G   +  ++
Sbjct: 126 TARNPNEKIGIYYEKGGHIGVWYDKTKLCEGPIPRFYQGHRNVTKLNVALTGRA-QYGNT 185

Query: 184 TGKAFEDWEKEGKTLRMKVDVRGPMKMKLYWMEMRWRIRAKVTCKILVKKEMGKTKVMEE 243
              A +  ++ G+ + + + V  P+ +KL  ++M+ +IR   +CK++V        +  +
Sbjct: 186 VLAALQQQQQTGR-VPLDLKVNAPVAIKLGNLKMK-KIRILGSCKLVVDSLSTNNNINIK 236

Query: 244 KCDHSMK 246
             D S K
Sbjct: 246 ASDCSFK 236

[Close]

BLAST of Csa4G269730 vs. TAIR10
Match: AT1G65690.1 (AT1G65690.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-18
Identity = 67/251 (26.69%), Postives = 121/251 (48.21%), Query Frame = 1


Query: 4   RVHPTLNPDSASNNPLKSPPSATYVIQIPKDQVYRIPPPENAARF-NLYTRHHHRPSPCR 63
           +++P  +P++A+  P  +P       +       ++P  +   RF  L      R   CR
Sbjct: 6   KIYPVQDPEAATARPT-APLVPRGSSRSEHGDPSKVPLNQRPQRFVPLAPPKKRRSCCCR 65

Query: 64  RF---LCFILLLLLLSAITSALVFLILQPDLPRFSILAVSISRIKPNT-TSFSPQFNVTI 123
            F    CF+LLL++    +  +++L+ +P LP +SI  + ++R   N  +S +  FNVTI
Sbjct: 66  CFCYTFCFLLLLVVAVGASIGILYLVFKPKLPDYSIDRLQLTRFALNQDSSLTTAFNVTI 125

Query: 124 RAENHNKNIGIYYEKNSTVSMNLSDVMLCEGALPLLYQPPRNVTVMRVKVKGSGIRLSSS 183
            A+N N+ IGIYYE  S +++   +  L  G+LP  YQ   N TV+ V++ G   + +S 
Sbjct: 126 TAKNPNEKIGIYYEDGSKITVWYMEHQLSNGSLPKFYQGHENTTVIYVEMTGQ-TQNASG 185

Query: 184 TGKAFEDWEKEGKTLRMKVDVRGPMKM---KLYWMEMRWRIRAKVTCKILVKKEMGKTKV 243
                E+ ++    + +++ V  P+++   KL   E+R+ +R  V    L    +   K+
Sbjct: 186 LRTTLEEQQQRTGNIPLRIRVNQPVRVKFGKLKLFEVRFLVRCGVFVDSLATNNV--IKI 245

Query: 244 MEEKCDHSMKL 247
               C   ++L
Sbjct: 246 QSSSCKFRLRL 252

[Close]

BLAST of Csa4G269730 vs. TAIR10
Match: AT2G22180.1 (AT2G22180.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-16
Identity = 66/254 (25.98%), Postives = 112/254 (44.09%), Query Frame = 1


Query: 9   LNPDSASNNPLKSPPSA-----TYVIQIPKDQVYRIPPPENAARFNLYTRH---HHRPSP 68
           L+P   +++P   PP +     TYV+Q+P+DQVY  PPPE+A      +++   + +   
Sbjct: 57  LSPLPTTSSPPLPPPDSIPELETYVVQVPRDQVYWTPPPEHAKYVEKRSKNPEKNKKKGC 116

Query: 69  CRRFLCFILLLLLLSAITSALVFLILQPDLPRFSILAVSISRIKPNTTSFSPQFNVTIRA 128
            +R L F ++L++   +  A++ ++     P   + AV    + P+       F VT+RA
Sbjct: 117 SKRLLWFFIILVIFGFLLGAIILILHFAFNPTLPVFAVERLTVNPS------NFEVTLRA 176

Query: 129 ENHNKNIGIYY--EKNSTVSMNLSDVMLCEGALPLLYQPPRNVTVMRVKVKGSGIRLSSS 188
           EN   N+G+ Y  EKN  VS+   +  L  G  P L Q       + VK+ G     S+ 
Sbjct: 177 ENPTSNMGVRYMMEKNGVVSLTYKNKSLGSGKFPGLSQAASGSDKVNVKLNG-----STK 236

Query: 189 TGKAFEDWEKEGKTLRMKVDVR-----GPMKMKLYWMEMRWRIRAKVTCKILVK--KEMG 246
                    K+   L + ++++     GP+K               VTC + VK   +  
Sbjct: 237 NAVVQPRGSKQPVVLMLNMELKAEYEAGPVKRNK---------EVVVTCDVKVKGLLDAK 290

[Close]

BLAST of Csa4G269730 vs. NCBI nr
Match: gi|449463891|ref|XP_004149664.1| (PREDICTED: uncharacterized protein LOC101202799 [Cucumis sativus])

HSP 1 Score: 504.2 bits (1297), Expect = 1.3e-139
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 1


Query: 1   MADRVHPTLNPDSASNNPLKSPPSATYVIQIPKDQVYRIPPPENAARFNLYTRHHHRPSP 60
           MADRVHPTLNPDSASNNPLKSPPSATYVIQIPKDQVYRIPPPENAARFNLYTRHHHRPSP
Sbjct: 1   MADRVHPTLNPDSASNNPLKSPPSATYVIQIPKDQVYRIPPPENAARFNLYTRHHHRPSP 60

Query: 61  CRRFLCFILLLLLLSAITSALVFLILQPDLPRFSILAVSISRIKPNTTSFSPQFNVTIRA 120
           CRRFLCFILLLLLLSAITSALVFLILQPDLPRFSILAVSISRIKPNTTSFSPQFNVTIRA
Sbjct: 61  CRRFLCFILLLLLLSAITSALVFLILQPDLPRFSILAVSISRIKPNTTSFSPQFNVTIRA 120

Query: 121 ENHNKNIGIYYEKNSTVSMNLSDVMLCEGALPLLYQPPRNVTVMRVKVKGSGIRLSSSTG 180
           ENHNKNIGIYYEKNSTVSMNLSDVMLCEGALPLLYQPPRNVTVMRVKVKGSGIRLSSSTG
Sbjct: 121 ENHNKNIGIYYEKNSTVSMNLSDVMLCEGALPLLYQPPRNVTVMRVKVKGSGIRLSSSTG 180

Query: 181 KAFEDWEKEGKTLRMKVDVRGPMKMKLYWMEMRWRIRAKVTCKILVKKEMGKTKVMEEKC 240
           KAFEDWEKEGKTLRMKVDVRGPMKMKLYWMEMRWRIRAKVTCKILVKKEMGKTKVMEEKC
Sbjct: 181 KAFEDWEKEGKTLRMKVDVRGPMKMKLYWMEMRWRIRAKVTCKILVKKEMGKTKVMEEKC 240

Query: 241 DHSMKLW 248
           DHSMKLW
Sbjct: 241 DHSMKLW 247

[Close]

BLAST of Csa4G269730 vs. NCBI nr
Match: gi|659097879|ref|XP_008449864.1| (PREDICTED: uncharacterized protein LOC103491613 [Cucumis melo])

HSP 1 Score: 432.2 bits (1110), Expect = 6.2e-118
Identity = 214/247 (86.64%), Postives = 229/247 (92.71%), Query Frame = 1


Query: 1   MADRVHPTLNPDSASNNPLKSPPSATYVIQIPKDQVYRIPPPENAARFNLYTRHHHRPSP 60
           MADRVHPT+NPDSASNNP K PPSATYVIQIPKDQVYRIPPPENAARFNLYTRH+ RPS 
Sbjct: 1   MADRVHPTVNPDSASNNP-KGPPSATYVIQIPKDQVYRIPPPENAARFNLYTRHNQRPSS 60

Query: 61  CRRFLCFILLLLLLSAITSALVFLILQPDLPRFSILAVSISRIKPNTTSFSPQFNVTIRA 120
           CRRFLCFILLLL LSAITSAL FLILQPDLPR+SILAVSISRIK NTTS SPQ NVTIRA
Sbjct: 61  CRRFLCFILLLLFLSAITSALFFLILQPDLPRYSILAVSISRIKSNTTSISPQLNVTIRA 120

Query: 121 ENHNKNIGIYYEKNSTVSMNLSDVMLCEGALPLLYQPPRNVTVMRVKVKGSGIRLSSSTG 180
           ENHNK IGIYYEKNS VS++LSDVMLCEGALPLLYQPP NVTV+ VK+KGSGIRLSSSTG
Sbjct: 121 ENHNKKIGIYYEKNSIVSVSLSDVMLCEGALPLLYQPPSNVTVIAVKMKGSGIRLSSSTG 180

Query: 181 KAFEDWEKEGKTLRMKVDVRGPMKMKLYWMEMRWRIRAKVTCKILVKKEMGKTKVMEEKC 240
           KA +DWEKEG+ +R+KVDVR P++MKLYWM++RWRIR KVTCKILVKK MGKTKVMEEKC
Sbjct: 181 KALKDWEKEGR-VRLKVDVRAPIEMKLYWMKVRWRIRGKVTCKILVKKVMGKTKVMEEKC 240

Query: 241 DHSMKLW 248
           DHSMKLW
Sbjct: 241 DHSMKLW 245

[Close]

BLAST of Csa4G269730 vs. NCBI nr
Match: gi|449452811|ref|XP_004144152.1| (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 4.7e-49
Identity = 109/260 (41.92%), Postives = 168/260 (64.62%), Query Frame = 1


Query: 1   MADRVHPTLN-PDSASNNPLK------SPPSATYVIQIPKDQVYRIPPPENAARFNLYTR 60
           MADRVHPT + P  ++++ L       SPP  TYVIQ+PKDQ+YR+PPPENA RF LYTR
Sbjct: 1   MADRVHPTADSPRPSTSSTLSDTTKPSSPPPGTYVIQLPKDQIYRLPPPENAHRFKLYTR 60

Query: 61  H-HHRPSPCRR----FLCFILLLLLLSAITSALVFLILQPDLPRFSILAVSISRIKPNTT 120
             H R + CR      L  + +L++L  IT A+ + +++P  P +SI A+SIS +   T+
Sbjct: 61  QSHRRRNRCRSCLFCLLAILAILIILLGITLAVFYFVVRPKSPNYSIDAISISGLNNLTS 120

Query: 121 S-FSPQFNVTIRAENHNKNIGIYYEKNSTVSMNLSDVMLCEGALPLLYQPPRNVTVMRVK 180
           S  SP FN+++RA+N NK IGIYY   S+V +  S+  L EG LP  +QP +NV+V+R  
Sbjct: 121 SAISPVFNLSVRADNPNKKIGIYYLTGSSVRIYSSNEKLSEGVLPDFFQPSKNVSVLRAV 180

Query: 181 VKGSGIRLSSSTGKAFEDWEKEGKTLRMKVDVRGPMKMKLYWMEMRWRIRAKVTCKILVK 240
           V+G+G+ LSS       +W K+ + + +KV++  P+K+K+  ++  W+I+ KV C + V 
Sbjct: 181 VRGAGVNLSSGAKNEIIEWVKQ-RAVLLKVEIGVPIKVKIGSVK-SWKIKVKVNCDVTVD 240

Query: 241 KEMGKTKVMEEKCDHSMKLW 248
           +     K++++ CD+S+K+W
Sbjct: 241 ELTAAAKIVKKNCDYSVKIW 258

[Close]

BLAST of Csa4G269730 vs. NCBI nr
Match: gi|595827610|ref|XP_007205722.1| (hypothetical protein PRUPE_ppa010043mg [Prunus persica])

HSP 1 Score: 202.6 bits (514), Expect = 8.0e-49
Identity = 108/268 (40.30%), Postives = 156/268 (58.21%), Query Frame = 1


Query: 1   MADRVHPTLNPDSASNNPLKS------------PPSATYVIQIPKDQVYRIPPPENAARF 60
           MADRVHP  +P      PL              PP  TYVIQIPKDQVYR+PPPENA+R+
Sbjct: 1   MADRVHPRDSPFHTETTPLSLSRPSPPDSEKPVPPPGTYVIQIPKDQVYRVPPPENASRY 60

Query: 61  NLYTRHHHRPSPCRRFLCFILLLL----LLSAITSALVFLILQPDLPRFSILAVSISRIK 120
             YT    R S C    C+ L LL     LSA  + + +L+++P+ P +S+ +++     
Sbjct: 61  QSYTHRKTRRSSCHCCCCWFLGLLAAIVFLSAAAAGIFYLVVRPEAPNYSVESIAFKGFN 120

Query: 121 PNTTS-----FSPQFNVTIRAENHNKNIGIYYEKNSTVSMNLSDVMLCEGALPLLYQPPR 180
             TTS      SP+ +VT+RA+N NK IGIYYE+ S+V +  SD+ LC+G LP  YQP +
Sbjct: 121 LTTTSSPPSAISPEIHVTVRAQNPNKKIGIYYERESSVKLFYSDIKLCDGVLPAFYQPSK 180

Query: 181 NVTVMRVKVKGSGIRLSSSTGKAFEDWEKEGKTLRMKVDVRGPMKMKLYWMEMRWRIRAK 240
           NVT  R  + GSGI L+S+  K   D +K+GK + +++D+R P+++K+  ++  W I  K
Sbjct: 181 NVTEFRTALTGSGIELTSAVQKGLVDAQKQGK-VPLELDLRAPVRIKVGPIK-TWTITVK 240

Query: 241 VTCKILVKKEMGKTKVMEEKCDHSMKLW 248
           V C + V K      ++   CD+S+  W
Sbjct: 241 VACHLTVNKLTADANIVSRDCDYSVDPW 266

[Close]

BLAST of Csa4G269730 vs. NCBI nr
Match: gi|659100419|ref|XP_008451090.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 201.8 bits (512), Expect = 1.4e-48
Identity = 110/263 (41.83%), Postives = 171/263 (65.02%), Query Frame = 1


Query: 1   MADRVHPTLN-PDSASNNPLK------SPPSATYVIQIPKDQVYRIPPPENAARFNLYTR 60
           MADRVHPT++ P  ++++ L       SPP  TYVIQ+PKDQ+YR+PPPENA RF LYTR
Sbjct: 1   MADRVHPTVDSPRPSTSSTLSDTTKPPSPPPGTYVIQLPKDQIYRVPPPENAHRFQLYTR 60

Query: 61  HHHRP-SPCRR----FLCFILLLLLLSAITSALVFLILQPDLPRFSILAVSISRIKPNTT 120
            + R  +PCR      L  ++LL++L  IT A+ +L+++P  P +SI A+S+S +   T+
Sbjct: 61  QNRRRRNPCRSCLFCLLAILILLIILLGITVAVFYLVVRPKSPNYSIDAISVSGLNLLTS 120

Query: 121 S----FSPQFNVTIRAENHNKNIGIYYEKNSTVSMNLSDVMLCEGALPLLYQPPRNVTVM 180
           S     SP FN+T+RA+N NK IGIYY   S+V +  S+  L EG LP  +QP +NV+V+
Sbjct: 121 SSSSAISPLFNLTVRADNPNKKIGIYYLTGSSVRIYFSNEKLSEGVLPDFFQPAKNVSVL 180

Query: 181 RVKVKGSGIRLSSSTGKAFEDWEKEGKTLRMKVDVRGPMKMKLYWMEMRWRIRAKVTCKI 240
           R  V+G+G+ LSS       +  K+ + + +KV++  P+K+K+  ++  W++R KV C +
Sbjct: 181 RSVVRGTGVNLSSGAKNGLIESVKQ-RVVVLKVEIGVPIKVKVGAVK-SWKMRVKVNCDV 240

Query: 241 LVKKEMGKTKVMEEKCDHSMKLW 248
            V +     K++++ CD+S+K+W
Sbjct: 241 TVDELTTAAKIVKKNCDYSVKIW 261

The following BLAST results are available for this feature:

BLAST of Csa4G269730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NHL12_ARATH	5.8e-07	27.81	NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1	[more]

BLAST of Csa4G269730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0D0_CUCSA	9.0e-140	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269730 PE=4 SV=1	[more]
A0A0A0LX01_CUCSA	3.3e-49	41.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G601000 PE=4 SV=1	[more]
M5W0N4_PRUPE	5.6e-49	40.30	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010043mg PE=4 SV=1	[more]
A0A087GRC4_ARAAL	2.1e-48	41.60	Uncharacterized protein OS=Arabis alpina GN=AALP_AA6G240400 PE=4 SV=1	[more]
D7LFJ6_ARALL	2.1e-48	41.60	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]

BLAST of Csa4G269730 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27080.1	6.5e-49	39.69	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT5G21130.1	7.5e-37	33.46	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT1G54540.1	8.3e-20	26.32	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT1G65690.1	1.6e-18	26.69	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT2G22180.1	1.5e-16	25.98	hydroxyproline-rich glycoprotein family protein	[more]

BLAST of Csa4G269730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463891\|ref\|XP_004149664.1\|	1.3e-139	100.00	PREDICTED: uncharacterized protein LOC101202799 [Cucumis sativus]	[more]
gi\|659097879\|ref\|XP_008449864.1\|	6.2e-118	86.64	PREDICTED: uncharacterized protein LOC103491613 [Cucumis melo]	[more]
gi\|449452811\|ref\|XP_004144152.1\|	4.7e-49	41.92	PREDICTED: protein YLS9-like [Cucumis sativus]	[more]
gi\|595827610\|ref\|XP_007205722.1\|	8.0e-49	40.30	hypothetical protein PRUPE_ppa010043mg [Prunus persica]	[more]
gi\|659100419\|ref\|XP_008451090.1\|	1.4e-48	41.83	PREDICTED: protein YLS9-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G269730.1	Csa4G269730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 117..222 score: 1.
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 22..247 score: 2.1
None	No IPR available	PANTHER	PTHR31852:SF0	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN	coord: 22..247 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G269730	Carg02772	Silver-seed gourd	carcuB0935

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G269730	Cucurbita pepo (Zucchini)	cpecuB728
Csa4G269730	Bottle gourd (USVL1VR-Ls)	culsiB246
Csa4G269730	Cucumber (Gy14) v2	cgybcuB167
Csa4G269730	Cucumber (Gy14) v2	cgybcuB174
Csa4G269730	Melon (DHL92) v3.6.1	cumedB279
Csa4G269730	Silver-seed gourd	carcuB0552
Csa4G269730	Watermelon (97103) v2	cuwmbB287
Csa4G269730	Wax gourd	cuwgoB390
Csa4G269730	Cucumber (Gy14) v1	cgycuB220
Csa4G269730	Cucurbita maxima (Rimu)	cmacuB549
Csa4G269730	Cucurbita maxima (Rimu)	cmacuB605
Csa4G269730	Cucurbita moschata (Rifu)	cmocuB538
Csa4G269730	Cucurbita moschata (Rifu)	cmocuB596
Csa4G269730	Melon (DHL92) v3.5.1	cumeB295
Csa4G269730	Watermelon (Charleston Gray)	cuwcgB292
Csa4G269730	Watermelon (97103) v1	cuwmB347
Csa4G269730	Cucurbita pepo (Zucchini)	cpecuB278