Csa4G260440 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G260440
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionNeurochondrin
LocationChr4 : 10478164 .. 10479718 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTGATTAGAGGGCTTAATAAGAGTACTGGGGTTGTGCTAGAATATTTGCAAGAAGCAAAGGTAATTATGGGAAAAATTATAGTTGTAGTGGGATATGGGGATAGTGTTCCTTATTTAAGATTGTGATTTATGATTGTTTAGGAGCATGGACATAGAAAAGGAAAAGACATTTTAGCATCTATACCGGGTTATTGGGAGGTAATATGTTCTATATTTGAAGGTGAAGATGAACATATGTTTATCAGCGCCCAATTATTACCTGCGATTCGGTATTTTATTGTACAAATATAAAATGCCTAAATTCCATTTCTATATTTACAAATGAACGTCCTTTCAATAATTCACTCCTTTCTTTGCAATTTTAGAAGAATCAGATAAGGAAGTTAAATGATTCAACATCCAAGTAAAAGCATATGAAGATAATTCAAATTTGAACATGTCTGTACAACTTATATGCTCAAAGAAACGAGTAATAAATGTGGGAAAGTTCCAATTCTTTCAGCAGATCCATTTCATAGAACTCTTAGTTCATTGTTTTTCCTTTTTTTTTTTTAATCTTTACCTATTATTTTATTTGGTTTAATGTGGTTGAGTGATACCACTTTTTAATTGACAAAACATTTTCATTTCATATTTCTTTCAAGTGGGAATCTCAACATCAGATTTCTTCTTTCTTCTTTGAAGTGGAAATTTCTTTGGTAGAAATTACTTTAGCCCATTTCACAATTTGAGTATATTCATACTAAAAGAACATCATTCCATGTGACTTTTACTCTTTTCAGTGTTTACTAGATGGTTTGGTTCTCTTTTGATTGTGGACTTTTCCTATTTTATGCAATCCTTATTGTTCCCGTGTTTCAGATAGCATGGACTTTCTTCTCCATATGATACATGTTTTATATACTTCAAAGAATTTCAGGTTCTCTCTCTCTTAGTGTGTGGGTGTGAGTTTACCTTTTTAGGGGTGTTCTAGTGGTTCTTGAGCCTAAATACATGTTGAAGTGCTATGACTATCCTGCAGCCAATGTAGTCTTTTTTTTAATTTTATTTTATGTGTGCTTAAATGATCATTTCTTCCTAAACGTATTTTGATAAGGAACATATTTATGCATGTTAGAAGAAGAAATGCGCTAAAACGTATTTAGGAAACACATTTCTTCCTAAATGTGCTTAAATGATCATTTCTTCCTAAACGTGTTTTGATAAGGAACATATTTTAGTATGTTAGAAGAAGAAACGTGCTTAAACATGTTTAGGAAACATTTTTTGTGTACTTATTAGACAACTTTAGCAATTGAGTTTAATTTTTTCTAGGCAATTGAATGATATTCCTTCTGAACTCGAGAAACTGGATAAGTTGTTTGAATTGTGAGTTACATGTTGTCTACAATATATTTTTCAAACTTTTGATGCAAATATTTCTTTGCTATGATCCATAAATCTTGCTAATAATTATCTTAAATGACCTATCCCTCACAACACATCCGTCTTACACTGCATCAAATTAATTGTAAGATATCCTACGGCCTTCTGTTGAAATTTCATAGGT

mRNA sequence

ATGAAAGTGATTAGAGGGCTTAATAAGAGTACTGGGGTTGTGCTAGAATATTTGCAAGAAGCAAAGGAGCATGGACATAGAAAAGGAAAAGACATTTTAGCATCTATACCGGGTTATTGGGAGGTAATATGTTCTATATTTGAAGGTGAAGATGAACATATGTTTATCAGCGCCCAATTATTACCTGCGATTCGGCAATTGAATGATATTCCTTCTGAACTCGAGAAACTGGATAAGTTGTTTGAATTGTGA

Coding sequence (CDS)

ATGAAAGTGATTAGAGGGCTTAATAAGAGTACTGGGGTTGTGCTAGAATATTTGCAAGAAGCAAAGGAGCATGGACATAGAAAAGGAAAAGACATTTTAGCATCTATACCGGGTTATTGGGAGGTAATATGTTCTATATTTGAAGGTGAAGATGAACATATGTTTATCAGCGCCCAATTATTACCTGCGATTCGGCAATTGAATGATATTCCTTCTGAACTCGAGAAACTGGATAAGTTGTTTGAATTGTGA

Protein sequence

MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASIPGYWEVICSIFEGEDEHMFISAQLLPAIRQLNDIPSELEKLDKLFEL*
Homology
[Close]
BLAST of Csa4G260440 vs. TrEMBL
Match: A0A0A0L0A7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G260440 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.3e-39
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASIPGYWEVICSIFEGEDEHMFISAQL 60
          MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASIPGYWEVICSIFEGEDEHMFISAQL
Sbjct: 1  MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASIPGYWEVICSIFEGEDEHMFISAQL 60

Query: 61 LPAIRQLNDIPSELEKLDKLFEL 84
          LPAIRQLNDIPSELEKLDKLFEL
Sbjct: 61 LPAIRQLNDIPSELEKLDKLFEL 83

[Close]
BLAST of Csa4G260440 vs. TrEMBL
Match: A0A0A0L170_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652750 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.0e-08
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1 

Query: 1   MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASI 37
           MKVIRGLN++TGVVLEYLQ+AKEHG RKG DILAS+
Sbjct: 418 MKVIRGLNETTGVVLEYLQDAKEHGQRKGDDILASV 453

[Close]
BLAST of Csa4G260440 vs. TrEMBL
Match: A0A0A0KLC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G049520 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-07
Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 1 

Query: 1  MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASIPGYWEVICSIFEGEDEHMFISAQL 60
          MKV RGLN++TGVVLEYLQ+AKE+G RKG DILA                   + +  + 
Sbjct: 1  MKVNRGLNETTGVVLEYLQDAKEYGQRKGDDILALF-----------------ILVIGRK 60

Query: 61 LPAIRQLNDIPSELEKLDKLFEL 84
          +   + +  IPS+L  LDKLFEL
Sbjct: 61 MNGNQLVGTIPSKLGNLDKLFEL 66

[Close]
BLAST of Csa4G260440 vs. TrEMBL
Match: M5XWV9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004130mg PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-06
Identity = 27/36 (75.00%), Postives = 33/36 (91.67%), Query Frame = 1 

Query: 1   MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASI 37
           MKVI+GLN++ GVVLEYLQ+AKEHG RKG D+LAS+
Sbjct: 275 MKVIKGLNETIGVVLEYLQDAKEHGQRKGDDLLASV 310

[Close]
BLAST of Csa4G260440 vs. TrEMBL
Match: A0A067KMM9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07121 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.4e-06
Identity = 25/36 (69.44%), Postives = 32/36 (88.89%), Query Frame = 1 

Query: 1   MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASI 37
           +KVI GLN++  VVLEYLQ+AKEHGH+KG D+LAS+
Sbjct: 377 LKVINGLNETVNVVLEYLQDAKEHGHKKGNDLLASV 412

[Close]
BLAST of Csa4G260440 vs. TAIR10
Match: AT4G32050.1 (AT4G32050.1 neurochondrin family protein)

HSP 1 Score: 47.8 bits (112), Expect = 3.9e-06
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 1 

Query: 2   KVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASI 37
           KVI+ LN++ G V EYL++AKEHG +KG D+LAS+
Sbjct: 374 KVIKILNETVGAVFEYLRDAKEHGIKKGTDLLASV 408

[Close]
BLAST of Csa4G260440 vs. NCBI nr
Match: gi|700198849|gb|KGN54007.1| (hypothetical protein Csa_4G260440 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 3.3e-39
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASIPGYWEVICSIFEGEDEHMFISAQL 60
          MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASIPGYWEVICSIFEGEDEHMFISAQL
Sbjct: 1  MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASIPGYWEVICSIFEGEDEHMFISAQL 60

Query: 61 LPAIRQLNDIPSELEKLDKLFEL 84
          LPAIRQLNDIPSELEKLDKLFEL
Sbjct: 61 LPAIRQLNDIPSELEKLDKLFEL 83

[Close]
BLAST of Csa4G260440 vs. NCBI nr
Match: gi|659104302|ref|XP_008452892.1| (PREDICTED: neurochondrin isoform X1 [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1 

Query: 1   MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASI 37
           MKVIRGLN++TGVVLEYLQ+AKEHG RKG DILAS+
Sbjct: 378 MKVIRGLNETTGVVLEYLQDAKEHGQRKGDDILASV 413

[Close]
BLAST of Csa4G260440 vs. NCBI nr
Match: gi|449455559|ref|XP_004145520.1| (PREDICTED: uncharacterized protein LOC101217523 isoform X2 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1 

Query: 1   MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASI 37
           MKVIRGLN++TGVVLEYLQ+AKEHG RKG DILAS+
Sbjct: 378 MKVIRGLNETTGVVLEYLQDAKEHGQRKGDDILASV 413

[Close]
BLAST of Csa4G260440 vs. NCBI nr
Match: gi|700200305|gb|KGN55463.1| (hypothetical protein Csa_4G652750 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1 

Query: 1   MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASI 37
           MKVIRGLN++TGVVLEYLQ+AKEHG RKG DILAS+
Sbjct: 418 MKVIRGLNETTGVVLEYLQDAKEHGQRKGDDILASV 453

[Close]
BLAST of Csa4G260440 vs. NCBI nr
Match: gi|659104306|ref|XP_008452894.1| (PREDICTED: neurochondrin isoform X2 [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1 

Query: 1   MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASI 37
           MKVIRGLN++TGVVLEYLQ+AKEHG RKG DILAS+
Sbjct: 378 MKVIRGLNETTGVVLEYLQDAKEHGQRKGDDILASV 413

The following BLAST results are available for this feature:
BLAST of Csa4G260440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0A7_CUCSA2.3e-39100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G260440 PE=4 SV=1[more]
A0A0A0L170_CUCSA8.0e-0883.33Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652750 PE=4 SV=1[more]
A0A0A0KLC1_CUCSA1.0e-0745.78Uncharacterized protein OS=Cucumis sativus GN=Csa_5G049520 PE=4 SV=1[more]
M5XWV9_PRUPE1.5e-0675.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004130mg PE=4 SV=1[more]
A0A067KMM9_JATCU4.4e-0669.44Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07121 PE=4 SV=1[more]
BLAST of Csa4G260440 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G32050.13.9e-0660.00 neurochondrin family protein[more]
BLAST of Csa4G260440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198849|gb|KGN54007.1|3.3e-39100.00hypothetical protein Csa_4G260440 [Cucumis sativus][more]
gi|659104302|ref|XP_008452892.1|1.2e-0783.33PREDICTED: neurochondrin isoform X1 [Cucumis melo][more]
gi|449455559|ref|XP_004145520.1|1.2e-0783.33PREDICTED: uncharacterized protein LOC101217523 isoform X2 [Cucumis sativus][more]
gi|700200305|gb|KGN55463.1|1.2e-0783.33hypothetical protein Csa_4G652750 [Cucumis sativus][more]
gi|659104306|ref|XP_008452894.1|1.2e-0783.33PREDICTED: neurochondrin isoform X2 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008709Neurochondrin
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G260440.1Csa4G260440.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008709NeurochondrinPFAMPF05536Neurochondrincoord: 1..36
score: 2.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G260440CsGy4G011420Cucumber (Gy14) v2cgybcuB168
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None