Csa4G227360 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G227360
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 9993608 .. 9993781 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAGATGGATCCGTGATGGATGCTGGTCCAAAGGAGGGTGGGCCGCATGTTTTGAATGTGAACCTATCAACGCCCATGGGTGGACCGACGAAGGGGTTGAAACAGATTGGTGTGGATGCAATTGTAGGGCTGAGAGCTCATGGGCCGCTGGAAGATGGGCCATCGGATGA

mRNA sequence

ATGTGGAGATGGATCCGTGATGGATGCTGGTCCAAAGGAGGGTGGGCCGCATGTTTTGAATGTGAACCTATCAACGCCCATGGGTGGACCGACGAAGGGGTTGAAACAGATTGGTGTGGATGCAATTGTAGGGCTGAGAGCTCATGGGCCGCTGGAAGATGGGCCATCGGATGA

Coding sequence (CDS)

ATGTGGAGATGGATCCGTGATGGATGCTGGTCCAAAGGAGGGTGGGCCGCATGTTTTGAATGTGAACCTATCAACGCCCATGGGTGGACCGACGAAGGGGTTGAAACAGATTGGTGTGGATGCAATTGTAGGGCTGAGAGCTCATGGGCCGCTGGAAGATGGGCCATCGGATGA

Protein sequence

MWRWIRDGCWSKGGWAACFECEPINAHGWTDEGVETDWCGCNCRAESSWAAGRWAIG*

Homology

[Close]

BLAST of Csa4G227360 vs. TrEMBL
Match: A0A0A0KWJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G227360 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 5.5e-32
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 1  MWRWIRDGCWSKGGWAACFECEPINAHGWTDEGVETDWCGCNCRAESSWAAGRWAIG 58
          MWRWIRDGCWSKGGWAACFECEPINAHGWTDEGVETDWCGCNCRAESSWAAGRWAIG
Sbjct: 1  MWRWIRDGCWSKGGWAACFECEPINAHGWTDEGVETDWCGCNCRAESSWAAGRWAIG 57

[Close]

BLAST of Csa4G227360 vs. NCBI nr
Match: gi|700198822|gb|KGN53980.1| (hypothetical protein Csa_4G227360 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 7.9e-32
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 1  MWRWIRDGCWSKGGWAACFECEPINAHGWTDEGVETDWCGCNCRAESSWAAGRWAIG 58
          MWRWIRDGCWSKGGWAACFECEPINAHGWTDEGVETDWCGCNCRAESSWAAGRWAIG
Sbjct: 1  MWRWIRDGCWSKGGWAACFECEPINAHGWTDEGVETDWCGCNCRAESSWAAGRWAIG 57

The following BLAST results are available for this feature:

BLAST of Csa4G227360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWJ8_CUCSA	5.5e-32	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G227360 PE=4 SV=1	[more]

BLAST of Csa4G227360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198822\|gb\|KGN53980.1\|	7.9e-32	100.00	hypothetical protein Csa_4G227360 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU096630	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G227360.1	Csa4G227360.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU096630	CU096630	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G227360	Silver-seed gourd	carcuB0508
Csa4G227360	Cucurbita maxima (Rimu)	cmacuB865
Csa4G227360	Cucurbita moschata (Rifu)	cmocuB853
Csa4G227360	Melon (DHL92) v3.5.1	cumeB278
Csa4G227360	Cucurbita pepo (Zucchini)	cpecuB502
Csa4G227360	Bottle gourd (USVL1VR-Ls)	culsiB264
Csa4G227360	Cucumber (Gy14) v2	cgybcuB168
Csa4G227360	Cucumber (Gy14) v2	cgybcuB171
Csa4G227360	Melon (DHL92) v3.6.1	cumedB316