Csa4G220860 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G220860
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 9971702 .. 9972168 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTTAGCGTTTCGAACGGATGTGCCGGGGTTTCCAAAAGATTGACTTCGGCGCGGGGGGTCCTTTGGGGTGGGCAGATGTCGACGACGACAATGGAAGCAAACGGTCGGAGTTGTGAATGGCTAGCGGCAGAGGGTTTCGGTGTGTGTGAGGGTTTTCGAATGGGTTTTTTCAAATGGAGGTGAGCGTTTCCAACGGATGGGCCGGGGTTTCCAGAAGATTGACTTCGCGCGCAGGGGGTCCTTTGGGGTGGGCAGTCGTTGTCGACGACAATGGAAGCAAACAGTCGGAGTTATGGACGGCCAGCAGCATAGTGTTTCGGTGTGTGGGGGGTTTTAAATGGGTTTTTTCGAATGGAGGTGAGCGTTTCCAACGAATGGGCCGGGGTTTCCAAAAGATTGACTTCACGCGGGGGGTTCCTTTGGGGTGGGCAGACGTCGTCGACGACAATGGAAGCAAATAG

mRNA sequence

ATGGAGGTTAGCGTTTCGAACGGATGTGCCGGGGTTTCCAAAAGATTGACTTCGGCGCGGGGGGTCCTTTGGGGTGGGCAGATGTCGACGACGACAATGGAAGCAAACGGTCGGAGTTGTGAATGGCTAGCGGCAGAGGGTTTCGGGGGTCCTTTGGGGTGGGCAGTCGTTGTCGACGACAATGGAAGCAAACAGTCGGAGTTATGGACGGCCAGCAGCATAGTGTTTCGGTGTGTGGGGGGTTTTAAATGGGTTTTTTCGAATGGAGGTGAGCGTTTCCAACGAATGGGCCGGGGTTTCCAAAAGATTGACTTCACGCGGGGGGTTCCTTTGGGGTGGGCAGACGTCGTCGACGACAATGGAAGCAAATAG

Coding sequence (CDS)

ATGGAGGTTAGCGTTTCGAACGGATGTGCCGGGGTTTCCAAAAGATTGACTTCGGCGCGGGGGGTCCTTTGGGGTGGGCAGATGTCGACGACGACAATGGAAGCAAACGGTCGGAGTTGTGAATGGCTAGCGGCAGAGGGTTTCGGGGGTCCTTTGGGGTGGGCAGTCGTTGTCGACGACAATGGAAGCAAACAGTCGGAGTTATGGACGGCCAGCAGCATAGTGTTTCGGTGTGTGGGGGGTTTTAAATGGGTTTTTTCGAATGGAGGTGAGCGTTTCCAACGAATGGGCCGGGGTTTCCAAAAGATTGACTTCACGCGGGGGGTTCCTTTGGGGTGGGCAGACGTCGTCGACGACAATGGAAGCAAATAG

Protein sequence

MEVSVSNGCAGVSKRLTSARGVLWGGQMSTTTMEANGRSCEWLAAEGFGGPLGWAVVVDDNGSKQSELWTASSIVFRCVGGFKWVFSNGGERFQRMGRGFQKIDFTRGVPLGWADVVDDNGSK*

Homology

[Close]

BLAST of Csa4G220860 vs. TrEMBL
Match: A0A0A0KYT3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G220860 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.1e-66
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1


Query: 1   MEVSVSNGCAGVSKRLTSARGVLWGGQMSTTTMEANGRSCEWLAAEGFGGPLGWAVVVDD 60
           MEVSVSNGCAGVSKRLTSARGVLWGGQMSTTTMEANGRSCEWLAAEGFGGPLGWAVVVDD
Sbjct: 1   MEVSVSNGCAGVSKRLTSARGVLWGGQMSTTTMEANGRSCEWLAAEGFGGPLGWAVVVDD 60

Query: 61  NGSKQSELWTASSIVFRCVGGFKWVFSNGGERFQRMGRGFQKIDFTRGVPLGWADVVDDN 120
           NGSKQSELWTASSIVFRCVGGFKWVFSNGGERFQRMGRGFQKIDFTRGVPLGWADVVDDN
Sbjct: 61  NGSKQSELWTASSIVFRCVGGFKWVFSNGGERFQRMGRGFQKIDFTRGVPLGWADVVDDN 120

Query: 121 GSK 124
           GSK
Sbjct: 121 GSK 123

[Close]

BLAST of Csa4G220860 vs. NCBI nr
Match: gi|700198821|gb|KGN53979.1| (hypothetical protein Csa_4G220860 [Cucumis sativus])

HSP 1 Score: 260.4 bits (664), Expect = 1.6e-66
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1


Query: 1   MEVSVSNGCAGVSKRLTSARGVLWGGQMSTTTMEANGRSCEWLAAEGFGGPLGWAVVVDD 60
           MEVSVSNGCAGVSKRLTSARGVLWGGQMSTTTMEANGRSCEWLAAEGFGGPLGWAVVVDD
Sbjct: 1   MEVSVSNGCAGVSKRLTSARGVLWGGQMSTTTMEANGRSCEWLAAEGFGGPLGWAVVVDD 60

Query: 61  NGSKQSELWTASSIVFRCVGGFKWVFSNGGERFQRMGRGFQKIDFTRGVPLGWADVVDDN 120
           NGSKQSELWTASSIVFRCVGGFKWVFSNGGERFQRMGRGFQKIDFTRGVPLGWADVVDDN
Sbjct: 61  NGSKQSELWTASSIVFRCVGGFKWVFSNGGERFQRMGRGFQKIDFTRGVPLGWADVVDDN 120

Query: 121 GSK 124
           GSK
Sbjct: 121 GSK 123

The following BLAST results are available for this feature:

BLAST of Csa4G220860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYT3_CUCSA	1.1e-66	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G220860 PE=4 SV=1	[more]

BLAST of Csa4G220860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198821\|gb\|KGN53979.1\|	1.6e-66	100.00	hypothetical protein Csa_4G220860 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU096630	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G220860.1	Csa4G220860.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU096630	CU096630	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 119..123 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G220860	CSPI04G11990	Wild cucumber (PI 183967)	cpicuB181

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G220860	Cucurbita maxima (Rimu)	cmacuB865
Csa4G220860	Cucurbita moschata (Rifu)	cmocuB853
Csa4G220860	Melon (DHL92) v3.5.1	cumeB278
Csa4G220860	Cucurbita pepo (Zucchini)	cpecuB502
Csa4G220860	Bottle gourd (USVL1VR-Ls)	culsiB264
Csa4G220860	Cucumber (Gy14) v2	cgybcuB168
Csa4G220860	Cucumber (Gy14) v2	cgybcuB171
Csa4G220860	Melon (DHL92) v3.6.1	cumedB316
Csa4G220860	Silver-seed gourd	carcuB0508