Csa4G194800 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G194800
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 9686276 .. 9687158 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTCCCCTCAATTGATAAGTTCCCAACAGAGAACTCATTTTTTTGGTAAATAACTACTAGCTTCTTCCAGATCAAGTTTGCTTGTGGTGACTTCTGATAGCATGAGTTTTGTGTTATTCAATTGGGAGTTGATGAAGAAGAAGAGAAAGTTATAGAGGTTTCTTTCTGTTTGTCTCCTAGTTGGGTTATTGAATGAGAATCTGAGTTGGAAAGTGTGGCAAATAAGAGAAAGATGCACAAAGGCAAGGTTGGCTTGGATTACTGTGCAAGTTTATTGAGAATATCTTGTTCTTATTTGTCTGTTGATGTCACTCATATTAATATATAAGATATATATATAGTTAGACTAGGTTCTCATGATTCTAGTGAAACAAAGATTCTTTTTGACAATTCTTATTCAATTTGATTATAGTGTTATTTGGGAGGCACTTTGCCTATTTTGGTCAGCTCTTTTCTACACTTTGATTGTGCAGCTATAATGATATACATGGGAAGTTGTGGCAGCTGAATCTTCTCAGCCTAGTAAAGTTCCAGGTGCCAAACCAGGTATTCTCTTCTCCTTTCTTCCCTTTGAACTTCTCAGCCTATATTATACGAGGTTTGTGGAAATTGTTAAGTCAACAACTTTGATTTTGGCCCGCGGTGCTGCTTTTGGTATTTATCCCAAGTCCCCTCCTGTCGAGGATCTTTCTTGGAAAACCTGTTAGGATTTTAGTTATCATGGTTGGGCGTTCTCTATTCTTGATGTCTTAGTTGTAGTTAGTTTGTTTCATACCGAAGAAATGTTGATGCTACTACTACGATAAGAATGTTCTTTTTTCTTTTGCCTAGTGGTTAACGTGTAGGGGTTTTCTTGAAGTTGTAATAAAAGATTGCGC

mRNA sequence

ATGGGATTCCCCTCAATTGATAAGTTCCCAACAGAGAACTCATTTTTTTGCTATAATGATATACATGGGAAGTTGTGGCAGCTGAATCTTCTCAGCCTAGTAAAGTTCCAGGTGCCAAACCAGGTATTCTCTTCTCCTTTCTTCCCTTTGAACTTCTCAGCCTATATTATACGAGGTTTGTGGAAATTGTTAAGTCAACAACTTTGA

Coding sequence (CDS)

ATGGGATTCCCCTCAATTGATAAGTTCCCAACAGAGAACTCATTTTTTTGCTATAATGATATACATGGGAAGTTGTGGCAGCTGAATCTTCTCAGCCTAGTAAAGTTCCAGGTGCCAAACCAGGTATTCTCTTCTCCTTTCTTCCCTTTGAACTTCTCAGCCTATATTATACGAGGTTTGTGGAAATTGTTAAGTCAACAACTTTGA

Protein sequence

MGFPSIDKFPTENSFFCYNDIHGKLWQLNLLSLVKFQVPNQVFSSPFFPLNFSAYIIRGLWKLLSQQL*
Homology
[Close]
BLAST of Csa4G194800 vs. TrEMBL
Match: A0A0A0KWR2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G194800 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.7e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MGFPSIDKFPTENSFFCYNDIHGKLWQLNLLSLVKFQVPNQVFSSPFFPLNFSAYIIRGL 60
          MGFPSIDKFPTENSFFCYNDIHGKLWQLNLLSLVKFQVPNQVFSSPFFPLNFSAYIIRGL
Sbjct: 1  MGFPSIDKFPTENSFFCYNDIHGKLWQLNLLSLVKFQVPNQVFSSPFFPLNFSAYIIRGL 60

Query: 61 WKLLSQQL 69
          WKLLSQQL
Sbjct: 61 WKLLSQQL 68

[Close]
BLAST of Csa4G194800 vs. NCBI nr
Match: gi|700198805|gb|KGN53963.1| (hypothetical protein Csa_4G194800 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 2.5e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MGFPSIDKFPTENSFFCYNDIHGKLWQLNLLSLVKFQVPNQVFSSPFFPLNFSAYIIRGL 60
          MGFPSIDKFPTENSFFCYNDIHGKLWQLNLLSLVKFQVPNQVFSSPFFPLNFSAYIIRGL
Sbjct: 1  MGFPSIDKFPTENSFFCYNDIHGKLWQLNLLSLVKFQVPNQVFSSPFFPLNFSAYIIRGL 60

Query: 61 WKLLSQQL 69
          WKLLSQQL
Sbjct: 61 WKLLSQQL 68

The following BLAST results are available for this feature:
BLAST of Csa4G194800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWR2_CUCSA1.7e-32100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G194800 PE=4 SV=1[more]
BLAST of Csa4G194800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198805|gb|KGN53963.1|2.5e-32100.00hypothetical protein Csa_4G194800 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU137637cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G194800.1Csa4G194800.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU137637CU137637transcribed_cluster