Csa4G192060 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G192060
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 9440314 .. 9440670 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTTATTTCTTGGAATGTACGAGGTATGTTCTTCTTTGATTAAACGAACTCTTCAACAACAACATCTGGGCATCGTTCTTCTGCAGAAACAAAATTATCAGTCATTGACACCTATCTTGTCAAATCTATATTGAGGCCTTCAAATATTTCACGGACTTCTCTTGATTCCTTTGGAACTTCTGGGGCATTCTTATTCTATGGAGTGAGCTTGACGTTATCAAAAGGAACTTATCAAATCTCTATTCATGCCTTTATATCTGGTGGTTTCTATTTTTGGCTAACAACAGTCAATGGGCCATACAAAGTGATTTTTGTGATGATTTCTAGTGAGAGCTCCGAGTGGCTGGTATAG

mRNA sequence

ATGAAATTTATTTCTTGGAATGTACGAGAAACAAAATTATCAGTCATTGACACCTATCTTGTCAAATCTATATTGAGGCCTTCAAATATTTCACGGACTTCTCTTGATTCCTTTGGAACTTCTGGGGCATTCTTATTCTATGGAGTGAGCTTGACGTTATCAAAAGGAACTTATCAAATCTCTATTCATGCCTTTATATCTGGTGGTTTCTATTTTTGGCTAACAACAGTCAATGGGCCATACAAAGTGATTTTTGTGATGATTTCTAGTGAGAGCTCCGAGTGGCTGGTATAG

Coding sequence (CDS)

ATGAAATTTATTTCTTGGAATGTACGAGAAACAAAATTATCAGTCATTGACACCTATCTTGTCAAATCTATATTGAGGCCTTCAAATATTTCACGGACTTCTCTTGATTCCTTTGGAACTTCTGGGGCATTCTTATTCTATGGAGTGAGCTTGACGTTATCAAAAGGAACTTATCAAATCTCTATTCATGCCTTTATATCTGGTGGTTTCTATTTTTGGCTAACAACAGTCAATGGGCCATACAAAGTGATTTTTGTGATGATTTCTAGTGAGAGCTCCGAGTGGCTGGTATAG

Protein sequence

MKFISWNVRETKLSVIDTYLVKSILRPSNISRTSLDSFGTSGAFLFYGVSLTLSKGTYQISIHAFISGGFYFWLTTVNGPYKVIFVMISSESSEWLV*
Homology
[Close]
BLAST of Csa4G192060 vs. TrEMBL
Match: A0A0A0KYM9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G192060 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 2.7e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MKFISWNVRETKLSVIDTYLVKSILRPSNISRTSLDSFGTSGAFLFYGVSLTLSKGTYQI 60
          MKFISWNVRETKLSVIDTYLVKSILRPSNISRTSLDSFGTSGAFLFYGVSLTLSKGTYQI
Sbjct: 1  MKFISWNVRETKLSVIDTYLVKSILRPSNISRTSLDSFGTSGAFLFYGVSLTLSKGTYQI 60

Query: 61 SIHAFISGGFYFWLTTVNGPYKVIFVMISSESSEWLV 98
          SIHAFISGGFYFWLTTVNGPYKVIFVMISSESSEWLV
Sbjct: 61 SIHAFISGGFYFWLTTVNGPYKVIFVMISSESSEWLV 97

[Close]
BLAST of Csa4G192060 vs. NCBI nr
Match: gi|700198776|gb|KGN53934.1| (hypothetical protein Csa_4G192060 [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 3.9e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MKFISWNVRETKLSVIDTYLVKSILRPSNISRTSLDSFGTSGAFLFYGVSLTLSKGTYQI 60
          MKFISWNVRETKLSVIDTYLVKSILRPSNISRTSLDSFGTSGAFLFYGVSLTLSKGTYQI
Sbjct: 1  MKFISWNVRETKLSVIDTYLVKSILRPSNISRTSLDSFGTSGAFLFYGVSLTLSKGTYQI 60

Query: 61 SIHAFISGGFYFWLTTVNGPYKVIFVMISSESSEWLV 98
          SIHAFISGGFYFWLTTVNGPYKVIFVMISSESSEWLV
Sbjct: 61 SIHAFISGGFYFWLTTVNGPYKVIFVMISSESSEWLV 97

The following BLAST results are available for this feature:
BLAST of Csa4G192060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYM9_CUCSA2.7e-47100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G192060 PE=4 SV=1[more]
BLAST of Csa4G192060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198776|gb|KGN53934.1|3.9e-47100.00hypothetical protein Csa_4G192060 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0045454 cell redox homeostasis
cellular_component GO:0005575 cellular_component
cellular_component GO:0005623 cell
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0016853 isomerase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU111770cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G192060.1Csa4G192060.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU111770CU111770transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G192060CsGy4G010760Cucumber (Gy14) v2cgybcuB168
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G192060Melon (DHL92) v3.6.1cumedB311
Csa4G192060Silver-seed gourdcarcuB0310
Csa4G192060Silver-seed gourdcarcuB0651
Csa4G192060Watermelon (97103) v2cuwmbB299
Csa4G192060Wax gourdcuwgoB406
Csa4G192060Cucurbita maxima (Rimu)cmacuB664
Csa4G192060Cucurbita maxima (Rimu)cmacuB860
Csa4G192060Cucurbita moschata (Rifu)cmocuB652
Csa4G192060Cucurbita moschata (Rifu)cmocuB848
Csa4G192060Melon (DHL92) v3.5.1cumeB324
Csa4G192060Watermelon (Charleston Gray)cuwcgB302
Csa4G192060Watermelon (97103) v1cuwmB339
Csa4G192060Cucurbita pepo (Zucchini)cpecuB079
Csa4G192060Cucurbita pepo (Zucchini)cpecuB497
Csa4G192060Bottle gourd (USVL1VR-Ls)culsiB258