Csa4G192050 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G192050
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 9437610 .. 9438481 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTTTGTTTGATTTTTCATTTCTGGTTTATCCCTGGTTTTGCTTTTCGATTTTTCTGTAATACCCTTGTTTCTTCTTCCTCTTCATCGTTGTGGTTTAATCTCTTCTTCCAACATGGCTGCCTTTGCTCTTTTTGTCTATTTTCTTGCCCTTTGCCCTTTTGGGTTTGTGTCTTCATCATCTCTTTCTAGATCTTCAATTTGCCCTAAAGAATCTGATTTCTTTCTCTATGGTGTTCGATCTCAATGCCCTTTCTCTGCTGTTCCCAGCTCGCCTTTGCAGGTATGATTTTCTTTGTCATCTTCTTAATTTTGTGTTGATTTTCCTTTTGCTTAGGTGCTGTTATCACTTTTCTCTGTGGTGTTTTTGTTTTCTTGTCTGAATCTAACCTTTTGGGAGGCTGTTGATGTCTGTGAAGCTTTTTTTTCCTGGGATTCCCTTGTTGTTCTCTACTTTTAGTTTTGAAAATCTTGGAGGTTTGCTCTTTTGTTTTCCCTATTGAAGTATGTTTTGTAGGGCGTTCAATTATTCCTTTAGAATTGGATTGTTAGAAGAAATGTTAATGGTTTTAGCTGTGTTGAGCTCTTGATTGTTTTGTACATGATGAACATTCAGGTGAGGGTAGGTAAAGAAATTTATGCTTATTTGTGATTTTCTCTTTTACTATTGAAAAATTATAAATTTTAGCTGAAAATCGGGTGGGAGAGATTAATCTTGAATCATGTTGAGCTGGGATGATTAATTCATTTTTAATCCAATTTTTGTGTAGACGAGAAAGTCAACAGAAATGACTTGGAGTTTTTCATTCAAACATTACACTCAATGTTGGGTCGAGTTAGGATGGATTTTGATTTCAATACGACAACCTAA

mRNA sequence

ATGGCTGCCTTTGCTCTTTTTGTCTATTTTCTTGCCCTTTGCCCTTTTGGGTTTGTGTCTTCATCATCTCTTTCTAGATCTTCAATTTGCCCTAAAGAATCTGATTTCTTTCTCTATGGTGTTCGATCTCAATGCCCTTTCTCTGCTGTTCCCAGCTCGCCTTTGCAGGTGCTGTTATCACTTTTCTCTGTGGTGTTTTTGTTTTCTTGTCTGAATCTAACCTTTTGGGAGGCTGTTGATGTCTGTGAAGCTTTTTTTTCCTGGGATTCCCTTGTTAATTGGATTGTTAGAAGAAATGTTAATGGTTTTAGCTGTGTTGAGCTCTTGATTGTTTTGTACATGATGAACATTCAGGTGAGGGTAGACGAGAAAGTCAACAGAAATGACTTGGAGTTTTTCATTCAAACATTACACTCAATGTTGGGTCGAGTTAGGATGGATTTTGATTTCAATACGACAACCTAA

Coding sequence (CDS)

ATGGCTGCCTTTGCTCTTTTTGTCTATTTTCTTGCCCTTTGCCCTTTTGGGTTTGTGTCTTCATCATCTCTTTCTAGATCTTCAATTTGCCCTAAAGAATCTGATTTCTTTCTCTATGGTGTTCGATCTCAATGCCCTTTCTCTGCTGTTCCCAGCTCGCCTTTGCAGGTGCTGTTATCACTTTTCTCTGTGGTGTTTTTGTTTTCTTGTCTGAATCTAACCTTTTGGGAGGCTGTTGATGTCTGTGAAGCTTTTTTTTCCTGGGATTCCCTTGTTAATTGGATTGTTAGAAGAAATGTTAATGGTTTTAGCTGTGTTGAGCTCTTGATTGTTTTGTACATGATGAACATTCAGGTGAGGGTAGACGAGAAAGTCAACAGAAATGACTTGGAGTTTTTCATTCAAACATTACACTCAATGTTGGGTCGAGTTAGGATGGATTTTGATTTCAATACGACAACCTAA

Protein sequence

MAAFALFVYFLALCPFGFVSSSSLSRSSICPKESDFFLYGVRSQCPFSAVPSSPLQVLLSLFSVVFLFSCLNLTFWEAVDVCEAFFSWDSLVNWIVRRNVNGFSCVELLIVLYMMNIQVRVDEKVNRNDLEFFIQTLHSMLGRVRMDFDFNTTT*

Homology

[Close]

BLAST of Csa4G192050 vs. TrEMBL
Match: A0A0A0KWM7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G192050 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 1.8e-82
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1


Query: 1   MAAFALFVYFLALCPFGFVSSSSLSRSSICPKESDFFLYGVRSQCPFSAVPSSPLQVLLS 60
           MAAFALFVYFLALCPFGFVSSSSLSRSSICPKESDFFLYGVRSQCPFSAVPSSPLQVLLS
Sbjct: 1   MAAFALFVYFLALCPFGFVSSSSLSRSSICPKESDFFLYGVRSQCPFSAVPSSPLQVLLS 60

Query: 61  LFSVVFLFSCLNLTFWEAVDVCEAFFSWDSLVNWIVRRNVNGFSCVELLIVLYMMNIQVR 120
           LFSVVFLFSCLNLTFWEAVDVCEAFFSWDSLVNWIVRRNVNGFSCVELLIVLYMMNIQVR
Sbjct: 61  LFSVVFLFSCLNLTFWEAVDVCEAFFSWDSLVNWIVRRNVNGFSCVELLIVLYMMNIQVR 120

Query: 121 VDEKVNRNDLEFFIQTLHSMLGRVRMDFDFNTTT 155
           VDEKVNRNDLEFFIQTLHSMLGRVRMDFDFNTTT
Sbjct: 121 VDEKVNRNDLEFFIQTLHSMLGRVRMDFDFNTTT 154

[Close]

BLAST of Csa4G192050 vs. NCBI nr
Match: gi|700198775|gb|KGN53933.1| (hypothetical protein Csa_4G192050 [Cucumis sativus])

HSP 1 Score: 313.2 bits (801), Expect = 2.6e-82
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1


Query: 1   MAAFALFVYFLALCPFGFVSSSSLSRSSICPKESDFFLYGVRSQCPFSAVPSSPLQVLLS 60
           MAAFALFVYFLALCPFGFVSSSSLSRSSICPKESDFFLYGVRSQCPFSAVPSSPLQVLLS
Sbjct: 1   MAAFALFVYFLALCPFGFVSSSSLSRSSICPKESDFFLYGVRSQCPFSAVPSSPLQVLLS 60

Query: 61  LFSVVFLFSCLNLTFWEAVDVCEAFFSWDSLVNWIVRRNVNGFSCVELLIVLYMMNIQVR 120
           LFSVVFLFSCLNLTFWEAVDVCEAFFSWDSLVNWIVRRNVNGFSCVELLIVLYMMNIQVR
Sbjct: 61  LFSVVFLFSCLNLTFWEAVDVCEAFFSWDSLVNWIVRRNVNGFSCVELLIVLYMMNIQVR 120

Query: 121 VDEKVNRNDLEFFIQTLHSMLGRVRMDFDFNTTT 155
           VDEKVNRNDLEFFIQTLHSMLGRVRMDFDFNTTT
Sbjct: 121 VDEKVNRNDLEFFIQTLHSMLGRVRMDFDFNTTT 154

[Close]

BLAST of Csa4G192050 vs. NCBI nr
Match: gi|449459608|ref|XP_004147538.1| (PREDICTED: 5'-adenylylsulfate reductase-like 5 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 2.1e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 1  MAAFALFVYFLALCPFGFVSSSSLSRSSICPKESDFFLYGVRSQCPFSAVPSSPLQV 58
          MAAFALFVYFLALCPFGFVSSSSLSRSSICPKESDFFLYGVRSQCPFSAVPSSPLQV
Sbjct: 1  MAAFALFVYFLALCPFGFVSSSSLSRSSICPKESDFFLYGVRSQCPFSAVPSSPLQV 57

[Close]

BLAST of Csa4G192050 vs. NCBI nr
Match: gi|659082703|ref|XP_008441988.1| (PREDICTED: 5'-adenylylsulfate reductase-like 5 [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 7.5e-21
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1


Query: 1  MAAFALFVYFLALCPFGFVSSSSLSRSSICPKESDFFLYGVRSQCPFSAVPSSPLQV 58
          MAAF+LFVYFLA+C  GFVSS+SLSRSSICPKESDFFLYGVRSQCPFSAVPSSPLQV
Sbjct: 1  MAAFSLFVYFLAICSLGFVSSTSLSRSSICPKESDFFLYGVRSQCPFSAVPSSPLQV 57

The following BLAST results are available for this feature:

BLAST of Csa4G192050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWM7_CUCSA	1.8e-82	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G192050 PE=4 SV=1	[more]

BLAST of Csa4G192050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198775\|gb\|KGN53933.1\|	2.6e-82	100.00	hypothetical protein Csa_4G192050 [Cucumis sativus]	[more]
gi\|449459608\|ref\|XP_004147538.1\|	2.1e-23	100.00	PREDICTED: 5'-adenylylsulfate reductase-like 5 [Cucumis sativus]	[more]
gi\|659082703\|ref\|XP_008441988.1\|	7.5e-21	91.23	PREDICTED: 5'-adenylylsulfate reductase-like 5 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0045454	cell redox homeostasis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU111770	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G192050.1	Csa4G192050.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU111770	CU111770	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G192050	Carg12603	Silver-seed gourd	carcuB0310

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G192050	Cucumber (Gy14) v2	cgybcuB168
Csa4G192050	Melon (DHL92) v3.6.1	cumedB311
Csa4G192050	Silver-seed gourd	carcuB0651
Csa4G192050	Watermelon (97103) v2	cuwmbB299
Csa4G192050	Wax gourd	cuwgoB406
Csa4G192050	Cucurbita maxima (Rimu)	cmacuB664
Csa4G192050	Cucurbita maxima (Rimu)	cmacuB860
Csa4G192050	Cucurbita moschata (Rifu)	cmocuB652
Csa4G192050	Cucurbita moschata (Rifu)	cmocuB848
Csa4G192050	Melon (DHL92) v3.5.1	cumeB324
Csa4G192050	Watermelon (Charleston Gray)	cuwcgB302
Csa4G192050	Watermelon (97103) v1	cuwmB339
Csa4G192050	Cucurbita pepo (Zucchini)	cpecuB079
Csa4G192050	Cucurbita pepo (Zucchini)	cpecuB497
Csa4G192050	Bottle gourd (USVL1VR-Ls)	culsiB258