Csa4G188960 (gene) Cucumber (Chinese Long) v2

NameCsa4G188960
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionEukaryotic translation initiation factor 3 subunit A
LocationChr4 : 9351322 .. 9351486 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGA

mRNA sequence

ATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGA

Coding sequence (CDS)

ATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGGAGGATGA

Protein sequence

MEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGG*
BLAST of Csa4G188960 vs. Swiss-Prot
Match: EIF3A_DROPE (Eukaryotic translation initiation factor 3 subunit A OS=Drosophila persimilis GN=eIF3-S10 PE=3 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-08
Identity = 33/53 (62.26%), Postives = 35/53 (66.04%), Query Frame = 1

Query: 2   EDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGG 55
           E  G R+E GG RME GG RME GG RME GG R E GG RM+ GG RM+ GG
Sbjct: 928 ERAGDRIERGGERMERGGDRMERGGDRMERGGERTERGGDRMDRGGERMDRGG 980


HSP 2 Score: 58.9 bits (141), Expect = 2.0e-08
Identity = 33/53 (62.26%), Postives = 35/53 (66.04%), Query Frame = 1

Query: 1   MEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDG 54
           +E GG RME GG RME GG RME GG R E GG RM+ GG RM+ GG R E G
Sbjct: 934 IERGGERMERGGDRMERGGDRMERGGERTERGGDRMDRGGERMDRGGERGERG 986

BLAST of Csa4G188960 vs. Swiss-Prot
Match: Y0266_DICDI (Uncharacterized protein DDB_G0290685 OS=Dictyostelium discoideum GN=DDB_G0290685 PE=2 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 7.1e-06
Identity = 23/53 (43.40%), Postives = 29/53 (54.72%), Query Frame = 1

Query: 2   EDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGG 55
           +DGG   +D G   +DGG   +DGG   +DGG   +DGG   +DGG   +DGG
Sbjct: 499 QDGGENNQDSGENNQDGGENNQDGGENNQDGGENNQDGGENNQDGGENNQDGG 551


HSP 2 Score: 48.1 bits (113), Expect = 3.5e-05
Identity = 22/52 (42.31%), Postives = 28/52 (53.85%), Query Frame = 1

Query: 2   EDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDG 54
           +D G   +DGG   +DGG   +DGG   +DGG   +DGG   +DGG   +DG
Sbjct: 506 QDSGENNQDGGENNQDGGENNQDGGENNQDGGENNQDGGENNQDGGENNQDG 557


HSP 3 Score: 48.1 bits (113), Expect = 3.5e-05
Identity = 23/53 (43.40%), Postives = 30/53 (56.60%), Query Frame = 1

Query: 2   EDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGG 55
           +DGG   +DGG   +DGG   +DGG   ++GG   +DGG   +DGG   +DGG
Sbjct: 718 QDGGENNQDGGENNQDGGEDNQDGGENNQEGGEDNQDGGEDNQDGGEDNQDGG 770


HSP 4 Score: 41.2 bits (95), Expect = 4.3e-03
Identity = 21/53 (39.62%), Postives = 27/53 (50.94%), Query Frame = 1

Query: 2   EDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGG 55
           +DGG   +DGG   +DG    +DGG   +D G   +DGG   +DGG   +D G
Sbjct: 577 QDGGENNQDGGENNQDGE-NNQDGGENNQDDGENKQDGGENNQDGGENNQDDG 628


HSP 5 Score: 41.2 bits (95), Expect = 4.3e-03
Identity = 21/53 (39.62%), Postives = 27/53 (50.94%), Query Frame = 1

Query: 2   EDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGG 55
           +DGG   +DGG   +DG    +DG    +DGG   +D G   +DGG   +DGG
Sbjct: 472 QDGGENNQDGGENNQDGHGNNQDGE-NNQDGGENNQDSGENNQDGGENNQDGG 523


HSP 6 Score: 40.4 bits (93), Expect = 7.3e-03
Identity = 19/52 (36.54%), Postives = 25/52 (48.08%), Query Frame = 1

Query: 2   EDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDG 54
           +DGG   +DG    +D G   +D G   +DGG   +DG    +DGG   +DG
Sbjct: 638 QDGGENNQDGDENNQDSGENNQDSGENNQDGGENNQDGDENNQDGGENNQDG 689


HSP 7 Score: 38.9 bits (89), Expect = 2.1e-02
Identity = 20/52 (38.46%), Postives = 26/52 (50.00%), Query Frame = 1

Query: 2   EDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDG 54
           +DGG   +DG    +DGG   +D G   +DGG   +DGG   +D G   +DG
Sbjct: 584 QDGGENNQDGE-NNQDGGENNQDDGENKQDGGENNQDGGENNQDDGENNQDG 634


HSP 8 Score: 38.9 bits (89), Expect = 2.1e-02
Identity = 20/52 (38.46%), Postives = 26/52 (50.00%), Query Frame = 1

Query: 2   EDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDG 54
           +DGG   +D G   +DGG   +DGG   +D G   +DG    +DGG   +DG
Sbjct: 597 QDGGENNQDDGENKQDGGENNQDGGENNQDDGENNQDGE-NNQDGGENNQDG 647

BLAST of Csa4G188960 vs. TrEMBL
Match: A0A0A0KZX8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G188960 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 5.4e-29
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1

Query: 1  MEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGG 55
          MEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGG
Sbjct: 1  MEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGG 54

BLAST of Csa4G188960 vs. TrEMBL
Match: A7EQQ0_SCLS1 (Uncharacterized protein OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=SS1G_07653 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 9.6e-18
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 1

Query: 1  MEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDG 54
          MEDG WRME+G WRME+G WRME+G WRME+G WRME+G WRME+G WRME+G
Sbjct: 4  MEDGEWRMENGEWRMENGEWRMENGEWRMENGEWRMENGEWRMENGEWRMENG 56

BLAST of Csa4G188960 vs. TrEMBL
Match: A7EQQ0_SCLS1 (Uncharacterized protein OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=SS1G_07653 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.6e-17
Identity = 38/53 (71.70%), Postives = 46/53 (86.79%), Query Frame = 1

Query: 1  MEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDG 54
          ME+G WRME+G WRME+G WRME+G WRME+G WRME+G WRME+G WRME+G
Sbjct: 11 MENGEWRMENGEWRMENGEWRMENGEWRMENGEWRMENGEWRMENGEWRMENG 63


HSP 2 Score: 94.4 bits (233), Expect = 4.7e-17
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1

Query: 1  MEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMED 53
          ME+G WRME+G WRME+G WRME+G WRME+G WRME+G WRME+G WRMED
Sbjct: 18 MENGEWRMENGEWRMENGEWRMENGEWRMENGEWRMENGEWRMENGEWRMED 69


HSP 3 Score: 84.7 bits (208), Expect = 3.8e-14
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1

Query: 1  MEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDG 54
          M+DG W M+DG W M+DG W M+DG W M+DG W M+DG W M+DG W M+DG
Sbjct: 1  MDDGRWTMDDGRWTMDDGRWTMDDGRWTMDDGRWTMDDGRWTMDDGRWTMDDG 53

BLAST of Csa4G188960 vs. TrEMBL
Match: B4I746_DROSE (GM22956 OS=Drosophila sechellia GN=Dsec\GM22956 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.9e-13
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 1

Query: 1  MEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGG 55
          M+DG W M+DG W M+DG W M+DG W M+DG W M+DG W M+DG W ++D G
Sbjct: 8  MDDGRWTMDDGRWTMDDGRWTMDDGRWTMDDGRWTMDDGRWTMDDGQWTVDDEG 61


HSP 2 Score: 84.3 bits (207), Expect = 4.9e-14
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 1

Query: 1  MEDGGWRMEDGGW--RMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGG 55
          +E GGWR+E GGW  R+  GGWR+  GGWR++ GGWR+  GGWR+E GG R+E GG
Sbjct: 4  LEAGGWRLEAGGWSWRINSGGWRINSGGWRLKSGGWRINSGGWRLEAGGRRLEAGG 59

BLAST of Csa4G188960 vs. TrEMBL
Match: A0A0C9TEH6_9HOMO (Unplaced genomic scaffold SPHSTscaffold_251, whole genome shotgun sequence (Fragment) OS=Sphaerobolus stellatus SS14 GN=M422DRAFT_190636 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 4.2e-13
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1

Query: 1  MEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGG--WRMEDGGWRMEDGG 55
          +  GGWR+  GGWR++ GGWR+  GGWR+E GG R+E GG  WR+  GGWR+  GG
Sbjct: 20 INSGGWRINSGGWRLKSGGWRINSGGWRLEAGGRRLEAGGWSWRIHSGGWRINSGG 75


HSP 2 Score: 79.0 bits (193), Expect = 2.1e-12
Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = 1

Query: 1  MEDGGW--RMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGG---------WRMEDGGWR 55
          +E GGW  R+  GGWR+  GGWR++ GGWR+  GGWR+E GG         WR+  GGWR
Sbjct: 11 LEAGGWSWRINSGGWRINSGGWRLKSGGWRINSGGWRLEAGGRRLEAGGWSWRIHSGGWR 70


HSP 3 Score: 81.6 bits (200), Expect = 3.2e-13
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 1

Query: 1  MEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGG 55
          +E GGWR+E   WR+E GGWR+E GGWR+E GGWR+  GGWR+E   WR+E  G
Sbjct: 9  LEAGGWRLEVKLWRLEAGGWRIEAGGWRLEAGGWRLNFGGWRLEARSWRLEARG 62

BLAST of Csa4G188960 vs. NCBI nr
Match: gi|700198764|gb|KGN53922.1| (hypothetical protein Csa_4G188960 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 7.8e-29
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1

Query: 1  MEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGG 55
          MEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGG
Sbjct: 1  MEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGG 54

BLAST of Csa4G188960 vs. NCBI nr
Match: gi|156050133|ref|XP_001591028.1| (hypothetical protein SS1G_07653 [Sclerotinia sclerotiorum 1980])

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-17
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 1

Query: 1  MEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDG 54
          MEDG WRME+G WRME+G WRME+G WRME+G WRME+G WRME+G WRME+G
Sbjct: 4  MEDGEWRMENGEWRMENGEWRMENGEWRMENGEWRMENGEWRMENGEWRMENG 56

BLAST of Csa4G188960 vs. NCBI nr
Match: gi|156050133|ref|XP_001591028.1| (hypothetical protein SS1G_07653 [Sclerotinia sclerotiorum 1980])

HSP 1 Score: 94.7 bits (234), Expect = 5.2e-17
Identity = 38/53 (71.70%), Postives = 46/53 (86.79%), Query Frame = 1

Query: 1  MEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDG 54
          ME+G WRME+G WRME+G WRME+G WRME+G WRME+G WRME+G WRME+G
Sbjct: 11 MENGEWRMENGEWRMENGEWRMENGEWRMENGEWRMENGEWRMENGEWRMENG 63


HSP 2 Score: 94.4 bits (233), Expect = 6.8e-17
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1

Query: 1  MEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMED 53
          ME+G WRME+G WRME+G WRME+G WRME+G WRME+G WRME+G WRMED
Sbjct: 18 MENGEWRMENGEWRMENGEWRMENGEWRMENGEWRMENGEWRMENGEWRMED 69


HSP 3 Score: 87.8 bits (216), Expect = 6.4e-15
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 1

Query: 1  MEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGG 55
          +E GGWR+E GGWR+E  GWR+  GGWR+E   WR+E GGWR+E G WR+E GG
Sbjct: 9  LEAGGWRLEAGGWRLEARGWRVNSGGWRLEANHWRLEAGGWRLETGDWRLEAGG 62

BLAST of Csa4G188960 vs. NCBI nr
Match: gi|749880742|gb|KIJ50300.1| (hypothetical protein M422DRAFT_114494, partial [Sphaerobolus stellatus SS14])

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-14
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 1

Query: 1  MEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDG 54
          +  GGWR+E GGWR+E GGWR+E  GWR+  GGWR+E   WR+E GGWR+E G
Sbjct: 2  LNSGGWRLEAGGWRLEAGGWRLEARGWRVNSGGWRLEANHWRLEAGGWRLETG 54


HSP 2 Score: 84.7 bits (208), Expect = 5.4e-14
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1

Query: 1  MEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDG 54
          M+DG W M+DG W M+DG W M+DG W M+DG W M+DG W M+DG W M+DG
Sbjct: 1  MDDGRWTMDDGRWTMDDGRWTMDDGRWTMDDGRWTMDDGRWTMDDGRWTMDDG 53

BLAST of Csa4G188960 vs. NCBI nr
Match: gi|195345691|ref|XP_002039402.1| (GM22956 [Drosophila sechellia])

HSP 1 Score: 82.4 bits (202), Expect = 2.7e-13
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 1

Query: 1  MEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGG 55
          M+DG W M+DG W M+DG W M+DG W M+DG W M+DG W M+DG W ++D G
Sbjct: 8  MDDGRWTMDDGRWTMDDGRWTMDDGRWTMDDGRWTMDDGRWTMDDGQWTVDDEG 61


HSP 2 Score: 84.3 bits (207), Expect = 7.1e-14
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 1

Query: 1  MEDGGWRMEDGGW--RMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGGWRMEDGG 55
          +E GGWR+E GGW  R+  GGWR+  GGWR++ GGWR+  GGWR+E GG R+E GG
Sbjct: 4  LEAGGWRLEAGGWSWRINSGGWRINSGGWRLKSGGWRINSGGWRLEAGGRRLEAGG 59

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
EIF3A_DROPE1.2e-0862.26Eukaryotic translation initiation factor 3 subunit A OS=Drosophila persimilis GN... [more]
Y0266_DICDI7.1e-0643.40Uncharacterized protein DDB_G0290685 OS=Dictyostelium discoideum GN=DDB_G0290685... [more]
Match NameE-valueIdentityDescription
A0A0A0KZX8_CUCSA5.4e-29100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G188960 PE=4 SV=1[more]
A7EQQ0_SCLS19.6e-1873.58Uncharacterized protein OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / ... [more]
A7EQQ0_SCLS13.6e-1771.70Uncharacterized protein OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / ... [more]
B4I746_DROSE1.9e-1355.56GM22956 OS=Drosophila sechellia GN=Dsec\GM22956 PE=4 SV=1[more]
A0A0C9TEH6_9HOMO4.2e-1355.36Unplaced genomic scaffold SPHSTscaffold_251, whole genome shotgun sequence (Frag... [more]
Match NameE-valueIdentityDescription
gi|700198764|gb|KGN53922.1|7.8e-29100.00hypothetical protein Csa_4G188960 [Cucumis sativus][more]
gi|156050133|ref|XP_001591028.1|1.4e-1773.58hypothetical protein SS1G_07653 [Sclerotinia sclerotiorum 1980][more]
gi|156050133|ref|XP_001591028.1|5.2e-1771.70hypothetical protein SS1G_07653 [Sclerotinia sclerotiorum 1980][more]
gi|749880742|gb|KIJ50300.1|1.1e-1460.38hypothetical protein M422DRAFT_114494, partial [Sphaerobolus stellatus SS14][more]
gi|195345691|ref|XP_002039402.1|2.7e-1355.56GM22956 [Drosophila sechellia][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G188960.1Csa4G188960.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownSSF69360Cell wall binding repeatcoord: 5..52
score: 2.3

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None