Csa4G187290 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G187290
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Ribosome biogenesis protein wdr12; contains IPR012972 (NLE), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)
Location	Chr4 : 9098972 .. 9104661 (+)

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Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAAACCCAAAACCCAAAACCTCGCTTCTTCCTCAGCCGCTAGACCGTCCGCCCATTCTCAGCGCCGCCGCATGTTTCTCTCGACCGCCGCACCTCACCTCGCCGTCATCTAGACCACTGCTGTGACTTAGATCAATTCAGTTCTCCATCTCCTCTTCGTTGTCGCGCCTCAGCTCGCCGCCATTGTCGACCTCGCCTCAGCTCGCCGCACCTTGCTGTCATCGTCGCTGGTTAGTTTGATTTCTATGCTCTTTGTTTTTTTCCCACACTGTTGTGAAATTTGAAAATCCCCAAATTTTAATTTGAACAGTAGTTAGGTAAAATGGCATCTTCATGCTCAAGCCAGGGTCAATCTTCTACTTCCATAAACTCAGCCTCCTCCATTGTTGAAGATGAAACAAAACCTCTTTGGAAATATGTGACCAAAATTCATAAATTGGGTGATGGGGGTGGAAATTTCTATTGGCAATGCAATAAAAAAAAAGCTCTTATACACGAGTTAGAGTTCATTTGTTGTGATGATGCTATAGAAGTTTAAGATTTGAACGCTTGAGGTTTTTCTAGTATCTAGTCTACTTTGTGCTAAAGACTTTGTGATGCTAATATGTATTTAGGGATTTAATTATAAAATGACGTAAACTAGACATATTCATATCATAGTTTTTTTTAGTAGTAGATGAATTGCCGTATCCTATTGTATCGCGAATCCGTATCCGTGACCGTGCTTCATAGGTTTTTGCACAAAGGTCGTTTTGTAGCATTTTCTCTGTAAAACTGTTTTTTGTTTTCAACCTTTGCAACTCAAGATTTTGCTTGCGGTTATATGTGCTACAGATCTTGGATTACTGATTCGTAGAGATAGCCATGGATATTGATGGGGATTTTGAGGACACTTCTCGCCGAGTTCAAGTGCGGTTTATCACCAAACTCATTGCTCCTTTCAAAGTTCCAGCGAATGCCATTGCCATTCCTTCTAATCTAACAAGATTGGGTCTTTCCACCGTTGTTAACAATCTTCTTTCAGCTGGTATGCTCTCTGATCATGTCTACAATGTCTTCTGGTTATTTGATGTTTGGCTGGAACCGTGTTTCTGAGCTTCATATAAACTTTCTTTTTCAATAATTAAAAATTATTACTGCATAGGGAATCCTGAGTGGGAAGAAGAACCATTTGATTTTCTAATTGATGGCGAGCTTGTCAGAATGTCGCTGGAGAAGTTCCTTCTTGCCAAGGGCATCTCAGCGGTAATATAATTTGGGCTACTTGTATTATTTATTTATTTGATCAATTTTTAGCTCCAAAGCTGTGTGGAAACAAAATGAGGAACTTTAGAATTCTCAAAATCTCGAGTTTGTTTAGATTGTATTTTGTCAGTTGAAGATCTTATCTTTTATTGTGGCATAAAATAGGAAAAAACATTGGAAATTGAGTACTTTAAGGCGGTTGCCCCACGAAGGGAGGAAGAGCCTTCTGTTCATGATGATTGGGTCAGTGCAGTTGATGGGTCTTGTCCTGGGTAAGCATTTGAATGAAACGTCTACTTTGTTATCTATTGGTCATCTGTAATTCTTACTATCACTTTTGTCTCTCTCTCTCTCACACACACACACACACACATTTTGAAAATGCCTGCAAGTTCTAAAGATTTAGTGATGATAGTGCCAATTCTTTTCCCTTTCAGTTTAGTTTATCTGAGTGTCAAAGATAAAGACGTACAATAAAGCTTTTTCTATAGCTGCATGTAGCACAGTATAGTGTATTTTATTGAATGTGCATACTCAGTTGTTATTTTTTTTCTTAGTAGTAACAGTTTATATGCTCATCATTAAACTGTTATTGCTGTCTCATTACAATAATTAGTTGTAGTTATGTATTCACTCGTATTTTGTAGGTTCATTTTGACAGGTTGTTATGATGGCTTTGGAAGGTAATCTGTTGTTTTTTGTTTATTTCTTTTAGTACTTGAAGGAACACAAAAGTTGTTGCCTTTGTTACTAAAGTTTCGTGAACAACCTAAAAACTTCTATTATTGTTCCTTAGGGTGTGGGAGTCTGCGGGATTGTGTACACATATTCTTGAAGGTCACAGTGATGCCATATCTTCTGTTTGTATTGTGAACCCTGGAGGTATTTACTACAATTAATAGCTTGGACATTGAACGATTCTTTGCCTGTTGTATTAGTGGATATTTTTTTCTATATCAGATTATTAATTATTTCTTGTAAGCAATTTTTAGAAGGATAAATGTGTTGAGGTTTTTCCTCTTGAAGAGGCAAGGCTTAAGCCCTTCTTAGGTGGTCTCTGGCGTAAGCCTCAAATAGTGAATTATAAACATTTTTCAAATTCGAAGTTGGTATGACCAAGTAATGGTAAACATGATAGTCATATAAAAGTGTAAAAAGAAATTTACCGCACAATTCACTTATTGAGTAATTTTAAAAAAATGTCTTTATCATCACAACTACTTCTATTGTTATTAATAGGATTAATTTACAACAATAGATTGTCTTCAATATTTTTGAAATTAAAGCAGTAAAAGTAGTCCTCATTCAAATTGTTGCAACTCAAACCTTCGTGGTTTTGAAGAATTAAGCAAATCAACATTATATTTTTTTATCATTGGACGATGTGTAGAGATGTTAAGTGTCAATGTTTTTTCACAAAGGCGAAAGCATCTTATGCTTTGACTATAAGGCATATGTGCTTTGAAGCAAGCCTCAATTACTTTTTAAAACAATGCTCGTAAGCACTTGCTCCTAATTTTTATATCAAATCATCATTATATTTATTTGTTTTCTACTTTTTTTTCCAAGTGTAGGATGCCCTTTTTGTTTATTGTTATTTATAATAAATAGTATTTTAATGAATCAAACTATTACATGTTAACATGAACATTTTGAATCAGTTGTGTTTGAGAAATTTGTTGTACATGCCGAGGTGTGCTTCCACTTTTCATGGTTAATCTTTAACCCACGTTTTCTTCACTGAGTGCTGGGAAAACCTTATGTATGAACTTCTAGTTTCTTGTGCAAGCCGTGGTCTTCTCCAATATATTATCAATATCTTTTTGATTTCTGAAACTTTCAATCATTGGGTTTTAGAGCTTGTTGCCATATAAACTATATCTGATTGTCCTGTAAAATACTAGTCTTCTAATACTTTAAATTTTATTATTTTACTGAAATGTGATTCTTTAATTCAAGTTTGAATTTTGAATTGATATTTTAATTTCCAATTTTTATTCCACTCTATAGTGTCTATGATTTATTAACTTTTGGCCATGCTAATACAGAAGCAACTAATGTCACTCTTGCCACGGCTTCAAAGGATCGAACAATCAGGCTATGGAAGGTAACTTTGAAGAAGTACAGGTAAAGTTGTACTGACGTAATTGATAATCTAACAAAACAATCTTTCTTGTTTCTATTTGAAGTATTCAAAAGACGATCGAGTTAAAAACCCTACCAAATTAAGGCCTTTCAAAATATTGAAAGGACATAGATTGTCTGTACAAAGTGTTGCATCACAGAAATCTGGACACCTGGTACAGTCTCATTCTTATGGCTCTTTTGTGTAAATCTGTTCAAGTAACAAGTGAAAGCTGCAGCTATCAACTCCCAAGTTCAACTCATGTTACTTTGATCTTTTTATTTTGTAATGTAGATCTGCTCAGGTTCTTGGGATCACACAATCAAGTTATGGCGAACGGATGAGCATCAGTCTGAAGGCGATGTCTCCATTAAGAAGAGAAAAAAGAATACCCAGGCTGAAGAATCTCAGTTAGAGGTTAAACTTTGTTTTTGCTCTTATTTAGTTAATTGAATCTACATCATGTTACGAGACTTGGTATTAGCTTACCACTGGAGAACATGTTACTGTGATGCTCCAATTTCAGGAGGGTTATGGGAGATGCTAGATTATGGTAATGAAAACAAGCAAAAGGAATTGCTCCAGTACTGGTTAAATGTTTGTGTTTGTCGAATGGTTACAGATTGGTTCACTTTATGACCTGGATTCTCACTTCTTCCCTGTTTTGACTAATTGGAGTTTCCTTAATATGGGAGTTTCATGAACAATAACTGTTACCAACCAGTTTTTATTTGCTGCATTGTAATTTTGTTCTGTTATGGAGCTTATGTCTAGAGACTCTGTATTAAATTAATTTATAAAAACATATCTAACAGGAGGACTCTGTTGCTACACTTGATGGCCATTCACAATCTGTATCGTCAGTTGCATGGCCAAAGCATGAGGAAATTTATTCAGTATCATGGGACCATTCTGTTAGAAGATGGGATGTTGAGACGGGCAATGTTTTGTTTAATCATGTAAGACTCTGAACTCTCTCCTTGTGCAAGTGTTTTGACTTTTTGGAGTTTTTGTTTTCAATGCATGAGGTGGGTGTCCGTAGGAAGTTTTTGGGTGATTTTAGTGGCTAGCTTCTCCTTTTTGTCTTGCTTGAAATATAAATATCTATTTCCTCTCGAAAAAAAGAAGAAGAAGAAGAAAGTATCCCTTTTATGTGCACGTTATTGGTTGTTACATACCCATTGTGAAGCAGCAAGCAGGTGAAGGTCCTTTGGTATTTTATGACAATTTAGCCCAGGTTCCCTTTCTTTGAATGAACTATCTTATGTCTTCATGTTAATTGATCTTTAATGAAAGATGAATCCAATCGTCCCCATTGGCAGGTATGTGGTAAGGCACTCAACTGCCTCGACATTGGAGGTGAAGGTTCCTCTCTCATAGCTGCCGGTGGCTCGGACCCAACCATTCGGATATGGGATCCTCGCAAGCCAGGTATATGAGAACTGGAATTGAGCTGCAGAGAAATTTCCCTCTTAAAATACTTCCTGTTTTTAATGATGTGATTTTTGTATAGGAACTTCAAGTCCTATCTTTCAGTTCTCATCTCATACTTCCTGGGTTTCGGATTGCAAGTGGCACGACAAATCTTGGTTCCATTTGCTGTCTGCATCATATGATGGGAAAGTTATGCTGTGGGATCTAAGAACTGCGGTACACTCAAATATTATTCTATCCTGCTCTATATTATTTGTTATTATGAATTAAATGCATTGACCTTGTGGTAAAATTGTGTTTTTGTTCATCTTACAGTGGCCTTTAGCTGTAATTGACTCTCACAACGATAAGGTACCCATTTAATTTCACTTCCTCAGGAATGTAGCCTTTGCCATGTACGTACAATCTTTGGTTCCATTGGTTAATATGTTACAAATTTCAGGTACTATCTGCTGATTGGTGGAAAGATGACAGCATTGTCAGTGGTGGGGCAGACTCTAAACTGCGCATTTCGTCAGGAATTTATGTTTTGTAAGTTAGAAGCTACTACAGCTATGGTGATTTTAGTGACTATGAAAGGGGTCGTTTAGATGCTTTGCAACAATCCCAATCCCAATCCTTGCTGTCTTTGTGCTTCTTAGTTTTGTCTTTCCAGTTTTGGGTAAGAGCTGTATGAAGAGGGAAATAGAAAAAGGTAAAATTGCATACTTTTAAATAGACATAGTGAAACTTGAGAGACTGAGTAGGCTTTGTTATTTATAAATTATTCTTTTTTGAGTTTGTTTACCCAATAACTTCTTGAATGATATGATACAAATCCAAATGGTTACTAAATAGTCTTTTTGTTCTTTTCAACTCTTATCTTAGATGCATTAATTATTATTA

mRNA sequence

ATGGATATTGATGGGGATTTTGAGGACACTTCTCGCCGAGTTCAAGTGCGGTTTATCACCAAACTCATTGCTCCTTTCAAAGTTCCAGCGAATGCCATTGCCATTCCTTCTAATCTAACAAGATTGGGTCTTTCCACCGTTGTTAACAATCTTCTTTCAGCTGGGAATCCTGAGTGGGAAGAAGAACCATTTGATTTTCTAATTGATGGCGAGCTTGTCAGAATGTCGCTGGAGAAGTTCCTTCTTGCCAAGGGCATCTCAGCGGAAAAAACATTGGAAATTGAGTACTTTAAGGCGGTTGCCCCACGAAGGGAGGAAGAGCCTTCTGTTCATGATGATTGGGTCAGTGCAGTTGATGGGTCTTGTCCTGGGTTCATTTTGACAGGTTGTTATGATGGCTTTGGAAGGGTGTGGGAGTCTGCGGGATTGTGTACACATATTCTTGAAGGTCACAGTGATGCCATATCTTCTGTTTGTATTGTGAACCCTGGAGAAGCAACTAATGTCACTCTTGCCACGGCTTCAAAGGATCGAACAATCAGGCTATGGAAGTATTCAAAAGACGATCGAGTTAAAAACCCTACCAAATTAAGGCCTTTCAAAATATTGAAAGGACATAGATTGTCTGTACAAAGTGTTGCATCACAGAAATCTGGACACCTGATCTGCTCAGGTTCTTGGGATCACACAATCAAGTTATGGCGAACGGATGAGCATCAGTCTGAAGGCGATGTCTCCATTAAGAAGAGAAAAAAGAATACCCAGGCTGAAGAATCTCAGTTAGAGGAGGACTCTGTTGCTACACTTGATGGCCATTCACAATCTGTATCGTCAGTTGCATGGCCAAAGCATGAGGAAATTTATTCAGTATCATGGGACCATTCTGTTAGAAGATGGGATGTTGAGACGGGCAATGTTTTGTTTAATCATGTATGTGGTAAGGCACTCAACTGCCTCGACATTGGAGGTGAAGGTTCCTCTCTCATAGCTGCCGGTGGCTCGGACCCAACCATTCGGATATGGGATCCTCGCAAGCCAGGAACTTCAAGTCCTATCTTTCAGTTCTCATCTCATACTTCCTGGGTTTCGGATTGCAAGTGGCACGACAAATCTTGGTTCCATTTGCTGTCTGCATCATATGATGGGAAAGTTATGCTGTGGGATCTAAGAACTGCGTGGCCTTTAGCTGTAATTGACTCTCACAACGATAAGGTACTATCTGCTGATTGGTGGAAAGATGACAGCATTGTCAGTGGTGGGGCAGACTCTAAACTGCGCATTTCGTCAGGAATTTATGTTTTGTAA

Coding sequence (CDS)

ATGGATATTGATGGGGATTTTGAGGACACTTCTCGCCGAGTTCAAGTGCGGTTTATCACCAAACTCATTGCTCCTTTCAAAGTTCCAGCGAATGCCATTGCCATTCCTTCTAATCTAACAAGATTGGGTCTTTCCACCGTTGTTAACAATCTTCTTTCAGCTGGGAATCCTGAGTGGGAAGAAGAACCATTTGATTTTCTAATTGATGGCGAGCTTGTCAGAATGTCGCTGGAGAAGTTCCTTCTTGCCAAGGGCATCTCAGCGGAAAAAACATTGGAAATTGAGTACTTTAAGGCGGTTGCCCCACGAAGGGAGGAAGAGCCTTCTGTTCATGATGATTGGGTCAGTGCAGTTGATGGGTCTTGTCCTGGGTTCATTTTGACAGGTTGTTATGATGGCTTTGGAAGGGTGTGGGAGTCTGCGGGATTGTGTACACATATTCTTGAAGGTCACAGTGATGCCATATCTTCTGTTTGTATTGTGAACCCTGGAGAAGCAACTAATGTCACTCTTGCCACGGCTTCAAAGGATCGAACAATCAGGCTATGGAAGTATTCAAAAGACGATCGAGTTAAAAACCCTACCAAATTAAGGCCTTTCAAAATATTGAAAGGACATAGATTGTCTGTACAAAGTGTTGCATCACAGAAATCTGGACACCTGATCTGCTCAGGTTCTTGGGATCACACAATCAAGTTATGGCGAACGGATGAGCATCAGTCTGAAGGCGATGTCTCCATTAAGAAGAGAAAAAAGAATACCCAGGCTGAAGAATCTCAGTTAGAGGAGGACTCTGTTGCTACACTTGATGGCCATTCACAATCTGTATCGTCAGTTGCATGGCCAAAGCATGAGGAAATTTATTCAGTATCATGGGACCATTCTGTTAGAAGATGGGATGTTGAGACGGGCAATGTTTTGTTTAATCATGTATGTGGTAAGGCACTCAACTGCCTCGACATTGGAGGTGAAGGTTCCTCTCTCATAGCTGCCGGTGGCTCGGACCCAACCATTCGGATATGGGATCCTCGCAAGCCAGGAACTTCAAGTCCTATCTTTCAGTTCTCATCTCATACTTCCTGGGTTTCGGATTGCAAGTGGCACGACAAATCTTGGTTCCATTTGCTGTCTGCATCATATGATGGGAAAGTTATGCTGTGGGATCTAAGAACTGCGTGGCCTTTAGCTGTAATTGACTCTCACAACGATAAGGTACTATCTGCTGATTGGTGGAAAGATGACAGCATTGTCAGTGGTGGGGCAGACTCTAAACTGCGCATTTCGTCAGGAATTTATGTTTTGTAA

Protein sequence

MDIDGDFEDTSRRVQVRFITKLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWEEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDGSCPGFILTGCYDGFGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTIRLWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQSEGDVSIKKRKKNTQAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRRWDVETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTSWVSDCKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNDKVLSADWWKDDSIVSGGADSKLRISSGIYVL*

Homology

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BLAST of Csa4G187290 vs. Swiss-Prot
Match: WDR12_CHLRE (Ribosome biogenesis protein WDR12 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_128420 PE=3 SV=2)

HSP 1 Score: 285.0 bits (728), Expect = 1.3e-75
Identity = 167/445 (37.53%), Postives = 236/445 (53.03%), Query Frame = 1


Query: 13  RVQVRFITKLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWEEEPFDFLIDGEL 72
           +V V+F+TKL A  +VP   +A+PS+L R GLS ++N+LL+   P     PFDFLIDGEL
Sbjct: 6   QVLVKFVTKLPAHLRVPETPVAVPSDLKRYGLSQIINHLLALDPPR----PFDFLIDGEL 65

Query: 73  VRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDGS-C--------- 132
           VR SLE+ LLA  +SAE TLE+EY  AV P +++  + HDDWVS+VDGS C         
Sbjct: 66  VRKSLEQHLLAHNLSAESTLEVEYVPAVVPPQQKNSTPHDDWVSSVDGSRCAPASSSGGS 125

Query: 133 -PGFILTGCYDGFGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTIR 192
             G +++G YDG  R+W         +  H+  ++  C+    ++    L T+ KDR ++
Sbjct: 126 PSGVVVSGSYDGLLRLWNGDLEAVASVSAHAGGVN--CVRFLPKSQGDLLLTSGKDRLVK 185

Query: 193 LWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEH-- 252
           +W+ S  +        R     +GH   V++VA+  SG    S  WD  + +W   E   
Sbjct: 186 MWQLSSSEEEDAGPSCRLVATYRGHEDGVEAVAASPSGRRFASCGWDGKLLVWEGGEQLR 245

Query: 253 --QSEGDVSIKKRKKNTQAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVR 312
                 + S KKRK  T A  S       A L GH   VSSVAWP    ++S  WDHSVR
Sbjct: 246 WAAGTAEASKKKRKTGT-ANGSAAAGAGGADLRGHLHCVSSVAWPAENSLFSGGWDHSVR 305

Query: 313 RWDVETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPR-KPGTSS-PIFQF 372
           RWDV +G     +   KA+ C+       +L+A G SD  +R+WD R K G+ +  +   
Sbjct: 306 RWDVSSGAAADTYNGSKAVLCIASHAASPALVAFGCSDRALRLWDTRGKAGSDALAVTTQ 365

Query: 373 SSHTSWVSDCKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNDKVLSADW----- 432
            +H  WV+   W   S  H+ SAS+DG + +WD+RT  PL ++  H DKVL+  W     
Sbjct: 366 GAHGGWVTAVAWCPSSQHHIASASHDGTIKMWDIRTQIPLGMLSHHTDKVLALGWLGGAE 425

Query: 433 -WKDDSIVSGGADSKLRISSGIYVL 435
                 +VSGGAD +LR+    Y++
Sbjct: 426 AGHARGLVSGGADCQLRMYESDYIV 443

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BLAST of Csa4G187290 vs. Swiss-Prot
Match: WDR12_XENTR (Ribosome biogenesis protein wdr12 OS=Xenopus tropicalis GN=wdr12 PE=2 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.0e-70
Identity = 154/416 (37.02%), Postives = 228/416 (54.81%), Query Frame = 1


Query: 13  RVQVRFITKLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWEEEPFDFLIDGEL 72
           ++Q RF T+    +KV     +IP+    + LS ++N LL   N + +   FDFL+  + 
Sbjct: 3   QIQARFFTEE-EKYKVDDVPFSIPATSEIVDLSNLINKLLETKNGDHKPVEFDFLVKSQF 62

Query: 73  VRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDGSCPGFILTGCYD 132
           +RM L K + A+GIS E  +EIEY + +   + EE  +HDDWVS++ G+   +ILTG YD
Sbjct: 63  LRMPLIKHMEAEGISTEVVVEIEYVEKITAPQPEECMMHDDWVSSIAGT-EEWILTGSYD 122

Query: 133 GFGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTIRLWKYSKDDRVK 192
              R+W   G     + GH++A+  V  V   ++ +  L +AS D+TI+LW+++ +    
Sbjct: 123 KTCRIWSLEGKTIMTITGHTEAVKDVTWVKK-DSLSCLLLSASIDQTIQLWEWNTE---- 182

Query: 193 NPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRT--DEHQSEGDVSIKKR 252
              K++     +GH  SV S+A   S    CSGSWD  +K+W     E + E + +  + 
Sbjct: 183 -RNKIKALHCCRGHAGSVDSIAVDASRTKFCSGSWDKMLKIWSAVPSEEEDEYEETSDRP 242

Query: 253 KKNTQAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRRWDVETGNVLFNH 312
           +K  + E+  L    + TL GHS++VSSV W   +EI S SWDH+++ WDVETG V    
Sbjct: 243 RKKQKTEKMGLTRIPIVTLSGHSEAVSSVLWSDVDEICSASWDHNIKIWDVETGTVKSTL 302

Query: 313 VCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTSWVSDCKWHDK 372
              K  NC+      S  +A+G +D  IR+WDPR    S  +   +SHT WV+  KW   
Sbjct: 303 AGNKVFNCISY-SPLSQRLASGSTDRHIRLWDPRSKDGSLVLCSLTSHTGWVTSVKWSPS 362

Query: 373 SWFHLLSASYDGKVMLWDLRTA-WPLAVIDSHNDKVLSADWWKDDSIVSGGADSKL 426
               L+S S D  V LWD R+   PL  + +H+DKVLS DW     I+SGG+D+KL
Sbjct: 363 HEQQLVSGSLDKLVKLWDTRSCKAPLYDLAAHSDKVLSVDWTDAGLILSGGSDNKL 409

[Close]

BLAST of Csa4G187290 vs. Swiss-Prot
Match: WDR12_BOVIN (Ribosome biogenesis protein WDR12 OS=Bos taurus GN=WDR12 PE=2 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.4e-69
Identity = 153/418 (36.60%), Postives = 224/418 (53.59%), Query Frame = 1


Query: 13  RVQVRFIT--KLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWEEEPFDFLIDG 72
           ++Q RF T  K  A   VP    +IP+      LS ++N LL A N   +   FDFLI G
Sbjct: 3   QLQTRFFTDNKKYAVDDVP---FSIPAASEIADLSNLINKLLEAKNEFHKHVEFDFLIKG 62

Query: 73  ELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDGSCPGFILTGC 132
           + +RM L K +  + IS+E+ +E+EY +     + E+   HDDW+SA++G+   +ILTG 
Sbjct: 63  QFLRMPLFKHMELENISSEEVVELEYVEKYTAPQPEQCMFHDDWISAIEGT-EEWILTGS 122

Query: 133 YDGFGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTIRLWKYSKDDR 192
           YD   R+W   G     + GH+D +  V  V   ++ +  L +AS D+TI LW+++ +  
Sbjct: 123 YDKTSRIWSLEGKSIMTIVGHTDVVKDVAWVKK-DSLSCLLLSASMDQTILLWEWNVERN 182

Query: 193 VKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRT--DEHQSEGDVSIK 252
                K++     +GH  SV S+A   +G   CSGSWD  +K+W T   + + E + S  
Sbjct: 183 -----KVKALHCCRGHAGSVDSIAVDSTGTKFCSGSWDKMLKIWSTVPTDEEDEMEESTN 242

Query: 253 KRKKNTQAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRRWDVETGNVLF 312
           + +K  + E+  L    + TL GH +++SSV W   EEI S SWDH+++ WDVE+G++  
Sbjct: 243 RPRKKQKTEQLGLTRTPIVTLSGHKEAISSVLWSDAEEICSASWDHTIKVWDVESGSLKS 302

Query: 313 NHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTSWVSDCKWH 372
                K  NC+        L A+G +D  IR+WDPR    S      +SHT WV+  KW 
Sbjct: 303 TLTGNKVFNCISYSPLCKRL-ASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWS 362

Query: 373 DKSWFHLLSASYDGKVMLWDLRTA-WPLAVIDSHNDKVLSADWWKDDSIVSGGADSKL 426
                 L+S S D  V LWD R+   PL  + +H DKVLS DW     ++SGGAD+KL
Sbjct: 363 PTHEQQLISGSLDNMVKLWDTRSCKAPLYDLAAHEDKVLSVDWTDSGLLLSGGADNKL 409

[Close]

BLAST of Csa4G187290 vs. Swiss-Prot
Match: WDR12_HUMAN (Ribosome biogenesis protein WDR12 OS=Homo sapiens GN=WDR12 PE=1 SV=2)

HSP 1 Score: 263.8 bits (673), Expect = 3.2e-69
Identity = 155/418 (37.08%), Postives = 223/418 (53.35%), Query Frame = 1


Query: 13  RVQVRFIT--KLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWEEEPFDFLIDG 72
           ++Q RF T  K  A   VP    +IP+      LS ++N LL   N   +   FDFLI G
Sbjct: 3   QLQTRFYTDNKKYAVDDVP---FSIPAASEIADLSNIINKLLKDKNEFHKHVEFDFLIKG 62

Query: 73  ELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDGSCPGFILTGC 132
           + +RM L+K +  + IS+E+ +EIEY +     + E+   HDDW+S++ G+   +ILTG 
Sbjct: 63  QFLRMPLDKHMEMENISSEEVVEIEYVEKYTAPQPEQCMFHDDWISSIKGA-EEWILTGS 122

Query: 133 YDGFGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTIRLWKYSKDDR 192
           YD   R+W   G     + GH+D +  V  V   ++ +  L +AS D+TI LW+++ +  
Sbjct: 123 YDKTSRIWSLEGKSIMTIVGHTDVVKDVAWVKK-DSLSCLLLSASMDQTILLWEWNVERN 182

Query: 193 VKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRT--DEHQSEGDVSIK 252
                K++     +GH  SV S+A   SG   CSGSWD  +K+W T   + + E + S  
Sbjct: 183 -----KVKALHCCRGHAGSVDSIAVDGSGTKFCSGSWDKMLKIWSTVPTDEEDEMEESTN 242

Query: 253 KRKKNTQAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRRWDVETGNVLF 312
           + +K  + E+  L    + TL GH ++VSSV W   EEI S SWDH++R WDVE+G++  
Sbjct: 243 RPRKKQKTEQLGLTRTPIVTLSGHMEAVSSVLWSDAEEICSASWDHTIRVWDVESGSLKS 302

Query: 313 NHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTSWVSDCKWH 372
                K  NC+        L A+G +D  IR+WDPR    S      +SHT WV+  KW 
Sbjct: 303 TLTGNKVFNCISYSPLCKRL-ASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWS 362

Query: 373 DKSWFHLLSASYDGKVMLWDLRTA-WPLAVIDSHNDKVLSADWWKDDSIVSGGADSKL 426
                 L+S S D  V LWD R+   PL  + +H DKVLS DW     ++SGGAD+KL
Sbjct: 363 PTHEQQLISGSLDNIVKLWDTRSCKAPLYDLAAHEDKVLSVDWTDTGLLLSGGADNKL 409

[Close]

BLAST of Csa4G187290 vs. Swiss-Prot
Match: WDR12_PONAB (Ribosome biogenesis protein WDR12 OS=Pongo abelii GN=WDR12 PE=2 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 3.2e-69
Identity = 156/418 (37.32%), Postives = 223/418 (53.35%), Query Frame = 1


Query: 13  RVQVRFIT--KLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWEEEPFDFLIDG 72
           ++Q RF T  K  A   VP    +IP+      LS ++N LL   N   +   FDFLI G
Sbjct: 3   QLQTRFYTDNKKYAIDDVP---FSIPAASEIADLSNIINKLLKDKNEFHKHVEFDFLIKG 62

Query: 73  ELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDGSCPGFILTGC 132
           + +RM L+K +  + IS+E+ +EIEY +     + E+   HDDW+S++ G+   +ILTG 
Sbjct: 63  QFLRMPLDKHMEMENISSEEVVEIEYVEKYTAPQPEQCMFHDDWISSIKGA-EEWILTGS 122

Query: 133 YDGFGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTIRLWKYSKDDR 192
           YD   R+W   G     + GH+D +  V  V   ++ +  L +AS D+TI LW+++ +  
Sbjct: 123 YDKTSRIWSLEGKSIMTIVGHTDVVKDVAWVKK-DSLSCLLLSASMDQTILLWEWNVERN 182

Query: 193 VKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRT--DEHQSEGDVSIK 252
                K++     +GH  SV S+A   SG   CSGSWD  +K+W T   + + E + S  
Sbjct: 183 -----KVKALHCCRGHAGSVDSIAVDGSGTKFCSGSWDKMLKIWSTVPTDEEDEMEESTN 242

Query: 253 KRKKNTQAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRRWDVETGNVLF 312
           + +K  + E+  L    V TL GH ++VSSV W   EEI S SWDH++R WDVE+G++  
Sbjct: 243 RPRKKQKTEQLGLTRTPVVTLSGHMEAVSSVLWSDAEEICSASWDHTIRVWDVESGSLKS 302

Query: 313 NHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTSWVSDCKWH 372
                K  NC+        L A+G +D  IR+WDPR    S      +SHT WV+  KW 
Sbjct: 303 TLTGNKVFNCISYSPLCKRL-ASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWS 362

Query: 373 DKSWFHLLSASYDGKVMLWDLRTA-WPLAVIDSHNDKVLSADWWKDDSIVSGGADSKL 426
                 L+S S D  V LWD R+   PL  + +H DKVLS DW     ++SGGAD+KL
Sbjct: 363 PTHEQQLISGSLDNIVKLWDTRSCKAPLYDLAAHEDKVLSVDWTDTGLLLSGGADNKL 409

[Close]

BLAST of Csa4G187290 vs. TrEMBL
Match: A0A0A0KYI3_CUCSA (Ribosome biogenesis protein WDR12 homolog OS=Cucumis sativus GN=Csa_4G187290 PE=3 SV=1)

HSP 1 Score: 895.6 bits (2313), Expect = 2.4e-257
Identity = 434/434 (100.00%), Postives = 434/434 (100.00%), Query Frame = 1


Query: 1   MDIDGDFEDTSRRVQVRFITKLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60
           MDIDGDFEDTSRRVQVRFITKLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE
Sbjct: 1   MDIDGDFEDTSRRVQVRFITKLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDG 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDG
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDG 120

Query: 121 SCPGFILTGCYDGFGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTI 180
           SCPGFILTGCYDGFGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTI
Sbjct: 121 SCPGFILTGCYDGFGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTI 180

Query: 181 RLWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQ 240
           RLWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQ
Sbjct: 181 RLWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQ 240

Query: 241 SEGDVSIKKRKKNTQAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRRWD 300
           SEGDVSIKKRKKNTQAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRRWD
Sbjct: 241 SEGDVSIKKRKKNTQAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRRWD 300

Query: 301 VETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTS 360
           VETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTS
Sbjct: 301 VETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTS 360

Query: 361 WVSDCKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNDKVLSADWWKDDSIVSGG 420
           WVSDCKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNDKVLSADWWKDDSIVSGG
Sbjct: 361 WVSDCKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNDKVLSADWWKDDSIVSGG 420

Query: 421 ADSKLRISSGIYVL 435
           ADSKLRISSGIYVL
Sbjct: 421 ADSKLRISSGIYVL 434

[Close]

BLAST of Csa4G187290 vs. TrEMBL
Match: W9QIE3_9ROSA (Ribosome biogenesis protein WDR12 homolog OS=Morus notabilis GN=L484_021019 PE=3 SV=1)

HSP 1 Score: 677.2 bits (1746), Expect = 1.4e-191
Identity = 320/434 (73.73%), Postives = 373/434 (85.94%), Query Frame = 1


Query: 1   MDIDGDFEDTSRRVQVRFITKLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60
           MD++GD ++TSRR+Q RF+TKL  P K PA +IAIPS+LTRLGLST+VNNLL AGNP+WE
Sbjct: 1   MDVNGDADETSRRIQARFVTKLDPPLKAPATSIAIPSSLTRLGLSTIVNNLLQAGNPDWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDG 120
            EPFDFLIDGELVRMSLE+FLLAKGISAEK LEIEY KAV PR+EE+PS+HDDWVSAVDG
Sbjct: 61  PEPFDFLIDGELVRMSLEQFLLAKGISAEKVLEIEYIKAVVPRKEEQPSLHDDWVSAVDG 120

Query: 121 SCPGFILTGCYDGFGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTI 180
           S P FILTGCYD FGRVW+SAG+CTHILEGHS AI+SV IVNP     VT+ATASKD+T+
Sbjct: 121 SSPRFILTGCYDNFGRVWKSAGVCTHILEGHSGAITSVSIVNPEGEERVTVATASKDQTV 180

Query: 181 RLWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQ 240
           RLWK+S ++RVKNP K+RPFK+L+GH+ SVQSV++Q SG ++CSG WD TI LW ++E  
Sbjct: 181 RLWKFSAEERVKNPLKIRPFKLLRGHKASVQSVSAQTSGDMVCSGGWDCTISLWESNETN 240

Query: 241 SEGD-VSIKKRKKNTQAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRRW 300
           +EGD VS+KK++ N +AEESQLE ++V+TL GH+Q VSSV W + E IYS S DHS+RRW
Sbjct: 241 TEGDLVSVKKKRVNDRAEESQLEGEAVSTLVGHTQCVSSVKWLQRETIYSASMDHSIRRW 300

Query: 301 DVETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHT 360
           DVET   L N  CGKALNC+DIGGE S+LIAAGGSDP +RIWDPRKPGTS+P+FQFSSHT
Sbjct: 301 DVETSKDLLNINCGKALNCIDIGGESSTLIAAGGSDPILRIWDPRKPGTSAPVFQFSSHT 360

Query: 361 SWVSDCKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNDKVLSADWWKDDSIVSG 420
           SW+S CKWH+KSWFHLLSASYDGK+MLWDLRTAWPL+VI SH DKVL ADWWK DSIVSG
Sbjct: 361 SWISACKWHNKSWFHLLSASYDGKLMLWDLRTAWPLSVIGSHEDKVLCADWWKGDSIVSG 420

Query: 421 GADSKLRISSGIYV 434
           G DSKL ISSGI V
Sbjct: 421 GVDSKLCISSGISV 434

[Close]

BLAST of Csa4G187290 vs. TrEMBL
Match: D7SVC1_VITVI (Ribosome biogenesis protein WDR12 homolog OS=Vitis vinifera GN=VIT_14s0068g00410 PE=3 SV=1)

HSP 1 Score: 673.3 bits (1736), Expect = 2.0e-190
Identity = 322/437 (73.68%), Postives = 370/437 (84.67%), Query Frame = 1


Query: 1   MDIDGDFEDTSRRVQVRFITKLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60
           M+IDGD E+TSRRVQVRF TKL +PFK P  +IAIPSNLTR+GLS +VNNLL +GNP+W+
Sbjct: 1   MEIDGDVEETSRRVQVRFTTKLQSPFKTPPTSIAIPSNLTRMGLSAIVNNLLKSGNPDWK 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDG 120
            EPFDFLIDGELVRMSLE+FL+AKGISAEK LEIEY KAVAPR++EEPS+HDDWVSAVDG
Sbjct: 61  PEPFDFLIDGELVRMSLEQFLIAKGISAEKILEIEYIKAVAPRKQEEPSLHDDWVSAVDG 120

Query: 121 SCPGFILTGCYDGFGRVWESAGLCTHILEGHSDAISSVCIVNPG---EATNVTLATASKD 180
           S PGFILTGCYDG GR+W++AG CTHILEGH+DAI+SV  ++P       N  +ATASKD
Sbjct: 121 SNPGFILTGCYDGLGRLWKAAGSCTHILEGHNDAITSVKFIDPKGLESVNNSVVATASKD 180

Query: 181 RTIRLWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTD 240
           RT+RLWK+   +R   P K+R FKIL GH  SVQSVA Q +G+++CSGSWD TI LWRTD
Sbjct: 181 RTLRLWKFDAGERHDLPLKIRAFKILHGHNASVQSVAVQPTGNMVCSGSWDCTINLWRTD 240

Query: 241 EHQSEGD-VSIKKRKKNTQAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSV 300
           E   EGD VS+KKRK N +AEESQ E ++V+T+ GH+Q VSSV WP+HE IYS SWDHSV
Sbjct: 241 EFDVEGDLVSVKKRKVNNEAEESQAEGEAVSTIVGHTQCVSSVIWPQHETIYSASWDHSV 300

Query: 301 RRWDVETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFS 360
           RRWDVETG   +N  CGKALNCLD+GGE S+LIAAGGSD T+RIWDPRKPGT +P+FQFS
Sbjct: 301 RRWDVETGKDSWNLFCGKALNCLDVGGESSALIAAGGSDTTLRIWDPRKPGTLTPVFQFS 360

Query: 361 SHTSWVSDCKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNDKVLSADWWKDDSI 420
           SHTSW+S CKWH+KSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHN+KVL ADWWK DS+
Sbjct: 361 SHTSWISACKWHNKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNNKVLCADWWKGDSV 420

Query: 421 VSGGADSKLRISSGIYV 434
           VSGGADSKL ISS I V
Sbjct: 421 VSGGADSKLCISSEIPV 437

[Close]

BLAST of Csa4G187290 vs. TrEMBL
Match: A5C297_VITVI (Ribosome biogenesis protein WDR12 homolog OS=Vitis vinifera GN=VITISV_042345 PE=3 SV=1)

HSP 1 Score: 663.3 bits (1710), Expect = 2.0e-187
Identity = 321/434 (73.96%), Postives = 368/434 (84.79%), Query Frame = 1


Query: 1   MDIDGDFEDTSRRVQVRFITKLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60
           M+IDGD E+TSRRVQVRF TKL +PFK P  +IAIPSNLTR+GLS +VNNLL +GNP+W+
Sbjct: 1   MEIDGDVEETSRRVQVRFTTKLQSPFKTPPTSIAIPSNLTRMGLSAIVNNLLKSGNPDWK 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDG 120
            EPFDFLIDGELVRMSLE+FL+AKGISAEK LEIEY KAVAPR++EEPS+HDDWVSAVDG
Sbjct: 61  PEPFDFLIDGELVRMSLEQFLIAKGISAEKILEIEYIKAVAPRKQEEPSLHDDWVSAVDG 120

Query: 121 SCPGFILTGCYDGFGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTI 180
           S PGFILTGCYDG GR+W++AG CTHILEGH+DAI+SV  ++P       +ATASKDRT+
Sbjct: 121 SNPGFILTGCYDGLGRLWKAAGSCTHILEGHNDAITSVKFIDPK-----VVATASKDRTL 180

Query: 181 RLWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQ 240
           RLWK S    +  P K+R FKIL GH  SVQSVA Q +G+++CSGSWD TI LWRTDE  
Sbjct: 181 RLWKGSA---MIFPLKIRAFKILHGHNASVQSVAVQPTGNMVCSGSWDCTINLWRTDEFD 240

Query: 241 SEGD-VSIKKRKKNTQAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRRW 300
            EGD VS+KKRK N +AEESQ E ++V+T+ GH+Q VSSV WP+HE IYS SWDHSVRRW
Sbjct: 241 VEGDLVSVKKRKVNNEAEESQAEGEAVSTIVGHTQCVSSVIWPQHETIYSASWDHSVRRW 300

Query: 301 DVETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHT 360
           DVETG   +N  CGKALNCLD+GGE S+LIAAGGSD T+RIWDPRKPGT +P+FQFSSHT
Sbjct: 301 DVETGKDSWNLFCGKALNCLDVGGESSALIAAGGSDTTLRIWDPRKPGTLTPVFQFSSHT 360

Query: 361 SWVSDCKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNDKVLSADWWKDDSIVSG 420
           SW+S CKWH+KSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHN+KVL ADWWK DS+VSG
Sbjct: 361 SWISACKWHNKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNNKVLCADWWKGDSVVSG 420

Query: 421 GADSKLRISSGIYV 434
           GADSKL ISS I V
Sbjct: 421 GADSKLCISSEIPV 426

[Close]

BLAST of Csa4G187290 vs. TrEMBL
Match: A0A067KUV1_JATCU (Ribosome biogenesis protein WDR12 homolog OS=Jatropha curcas GN=JCGZ_09062 PE=3 SV=1)

HSP 1 Score: 661.4 bits (1705), Expect = 7.7e-187
Identity = 313/433 (72.29%), Postives = 368/433 (84.99%), Query Frame = 1


Query: 3   IDGDFEDTSRRVQVRFITKLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWEEE 62
           ++GD E+  R+VQ RF+TKL AP+K PA AI IP+NLTRLGLST+VN+LL AGNPEWE +
Sbjct: 1   MEGDTEE--RQVQARFVTKLKAPYKAPATAITIPANLTRLGLSTIVNSLLKAGNPEWENQ 60

Query: 63  PFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDGSC 122
           PFDFLIDGELVRMSLE+FLLAKGISAEKTLEIEY K+VAPR++EEPS+H+DWVSAVDGSC
Sbjct: 61  PFDFLIDGELVRMSLEQFLLAKGISAEKTLEIEYIKSVAPRKQEEPSLHNDWVSAVDGSC 120

Query: 123 PGFILTGCYDGFGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTIRL 182
           P FILTGCYDGFGRVW  AG CTH+LEGHSDAI+SV I+N G   +VT+ATASKD+T+RL
Sbjct: 121 PRFILTGCYDGFGRVWRGAGQCTHMLEGHSDAITSVGIINHGGTDSVTVATASKDQTLRL 180

Query: 183 WKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQSE 242
           WK+  ++   +PT +R FKIL+GH  SVQSVA++ SG +ICSGSWD TI LWRT+E  +E
Sbjct: 181 WKFDTEEHKNHPTTIRAFKILRGHNASVQSVAAETSGSMICSGSWDCTINLWRTNESDTE 240

Query: 243 GD-VSIKKRKKNTQAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRRWDV 302
           G+ VSIKKRK   +AEESQLE +S +TL GH+Q VS+V WP+ E IYS SWDHS+RRWDV
Sbjct: 241 GNLVSIKKRKVKNEAEESQLEGESFSTLVGHTQCVSAVIWPERETIYSASWDHSIRRWDV 300

Query: 303 ETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTSW 362
           ETG  L    CGKALNC+ IGGEGS+LIAAGGSD  +RIWDPRKPG+S+PI+QFSSHTSW
Sbjct: 301 ETGKDLSKIFCGKALNCVHIGGEGSALIAAGGSDAILRIWDPRKPGSSAPIYQFSSHTSW 360

Query: 363 VSDCKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNDKVLSADWWKDDSIVSGGA 422
           +S CKWHDKSWFHLL++SYDGKVMLWDLRTAWPLAVI+SH DKVL ADWWK DS++SGG 
Sbjct: 361 ISACKWHDKSWFHLLTSSYDGKVMLWDLRTAWPLAVIESHEDKVLCADWWKSDSLISGGV 420

Query: 423 DSKLRISSGIYVL 435
           D KL ISS I +L
Sbjct: 421 DCKLCISSDISIL 431

[Close]

BLAST of Csa4G187290 vs. TAIR10
Match: AT5G15550.1 (AT5G15550.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 659.8 bits (1701), Expect = 1.1e-189
Identity = 309/434 (71.20%), Postives = 370/434 (85.25%), Query Frame = 1


Query: 1   MDIDGDFEDTSRRVQVRFITKLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60
           MDIDG  ED SRR+ V+F+TKL +PFKVP N++AIPSN+TRLGLS++VN+++ + NPEW+
Sbjct: 1   MDIDG--EDVSRRLHVKFVTKLDSPFKVPVNSVAIPSNVTRLGLSSIVNSIIESENPEWK 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDG 120
            EPFDFLIDGEL+RMSLE+FLLAKGISAE+TLEIEY +AV PR+EEEPS+HDDWVSAV+G
Sbjct: 61  TEPFDFLIDGELIRMSLEEFLLAKGISAERTLEIEYIRAVTPRKEEEPSLHDDWVSAVNG 120

Query: 121 SCPGFILTGCYDGFGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTI 180
           S P FILTGCYDG GRVW SAG C+HILEGHS AISSV +VN  +A  VT+ATASKDRT+
Sbjct: 121 SSPRFILTGCYDGLGRVWSSAGSCSHILEGHSGAISSVALVNSNDAETVTVATASKDRTL 180

Query: 181 RLWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQ 240
           RL+K+   + V + TK+R +KIL+GH+ SVQSV++QKSG+++CS SWD TI LW T+E  
Sbjct: 181 RLFKFDPAESVDSTTKVRAYKILRGHKASVQSVSAQKSGNMVCSSSWDCTINLWNTNEST 240

Query: 241 SEGD-VSIKKRKKNTQAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRRW 300
           SEG+ VS+KKRK N QAEESQ E ++V +L GH+Q VSSV WP+H+ IYS SWDHSVRRW
Sbjct: 241 SEGESVSVKKRKGNNQAEESQSEGEAVTSLVGHTQCVSSVVWPEHDVIYSSSWDHSVRRW 300

Query: 301 DVETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHT 360
           DVETG    N  CGKALN +D+GGE S+LIAAGGSDP +R+WDPRKPGTS+P+FQFSSH+
Sbjct: 301 DVETGKDSLNLFCGKALNTVDVGGESSALIAAGGSDPILRVWDPRKPGTSAPVFQFSSHS 360

Query: 361 SWVSDCKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNDKVLSADWWKDDSIVSG 420
           SW+S CKWH  SWFHLLSASYDGK+MLWDLRTAWPL+VID+HNDKVLSADWWK +S+VSG
Sbjct: 361 SWISACKWHKSSWFHLLSASYDGKIMLWDLRTAWPLSVIDTHNDKVLSADWWKGESVVSG 420

Query: 421 GADSKLRISSGIYV 434
           GADS LRISSGI +
Sbjct: 421 GADSNLRISSGIAI 432

[Close]

BLAST of Csa4G187290 vs. TAIR10
Match: AT5G16750.1 (AT5G16750.1 Transducin family protein / WD-40 repeat family protein)

HSP 1 Score: 84.3 bits (207), Expect = 2.0e-16
Identity = 80/302 (26.49%), Postives = 139/302 (46.03%), Query Frame = 1


Query: 136 RVWESAGL-CTHILEGHSDAISSV--CIVNPGEATNVTLATASKDRTIRLWKYSKDDRVK 195
           RV++ A + C+++L GH + + S+  C+ + G   NV + T SKD+T+RLW         
Sbjct: 384 RVYDVATMSCSYVLAGHKEVVLSLDTCVSSSG---NVLIVTGSKDKTVRLW--------- 443

Query: 196 NPTKLRPFKILKGHRLSVQSVA-SQKSGHLICSGSWDHTIKLWRTD--EHQSEGDVSIKK 255
           N T      +  GH   + +VA ++KS     SGS D T+K+W  D     SE  +++K 
Sbjct: 444 NATSKSCIGVGTGHNGDILAVAFAKKSFSFFVSGSGDRTLKVWSLDGISEDSEEPINLKT 503

Query: 256 RKKNTQAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSV-SWDHSVRRWDV-ETGNVL 315
           R                + +  H + ++SVA  +++ +    S D +   W + +  +V+
Sbjct: 504 R----------------SVVAAHDKDINSVAVARNDSLVCTGSEDRTASIWRLPDLVHVV 563

Query: 316 FNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTSWVSDCKW 375
                 + +  ++       ++ A G D T++IW        S +  F  HTS V    +
Sbjct: 564 TLKGHKRRIFSVEFSTVDQCVMTASG-DKTVKIW---AISDGSCLKTFEGHTSSVLRASF 623

Query: 376 -HDKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNDKVLS-ADWWKDDSIVSGGADSKL 428
             D + F  +S   DG + LW++ T+  +A  D H DKV + A   K + I +GG D+ +
Sbjct: 624 ITDGTQF--VSCGADGLLKLWNVNTSECIATYDQHEDKVWALAVGKKTEMIATGGGDAVI 651

[Close]

BLAST of Csa4G187290 vs. TAIR10
Match: AT2G43770.1 (AT2G43770.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-13
Identity = 64/230 (27.83%), Postives = 91/230 (39.57%), Query Frame = 1


Query: 199 PFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQSEGDVSIKKRKKNTQAEE 258
           P  +L GH  +V ++    +G LI SGS D  I LWR       GD              
Sbjct: 45  PIMLLSGHPSAVYTMKFNPAGTLIASGSHDREIFLWRV-----HGDCK------------ 104

Query: 259 SQLEEDSVATLDGHSQSVSSVAWPKH-EEIYSVSWDHSVRRWDVETGNVLFNHV-CGKAL 318
                 +   L GH  ++  + W     +I S S D +VR WDVETG  +         +
Sbjct: 105 ------NFMVLKGHKNAILDLHWTSDGSQIVSASPDKTVRAWDVETGKQIKKMAEHSSFV 164

Query: 319 NCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTSWVSDCKWHDKSWFHLL 378
           N       G  LI +G  D T ++WD R+ G +   F      + VS     DK    + 
Sbjct: 165 NSCCPTRRGPPLIISGSDDGTAKLWDMRQRG-AIQTFPDKYQITAVSFSDAADK----IF 224

Query: 379 SASYDGKVMLWDLRTAWPLAVIDSHNDKVLSADWWKDDS-IVSGGADSKL 426
           +   D  V +WDLR       ++ H D +       D S +++ G D+KL
Sbjct: 225 TGGVDNDVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSYLLTNGMDNKL 246

[Close]

BLAST of Csa4G187290 vs. TAIR10
Match: AT3G18860.1 (AT3G18860.1 transducin family protein / WD-40 repeat family protein)

HSP 1 Score: 74.3 bits (181), Expect = 2.0e-13
Identity = 76/286 (26.57%), Postives = 119/286 (41.61%), Query Frame = 1


Query: 148 LEGHSDAISSVCIVNPGEATNVTLATASKDRTIRLWKYSKDDRVKNPTKLRPFKILKGHR 207
           L GH D +  +C+ N     +  +AT+S+DRTIR+W     D+ K  ++    KIL GH 
Sbjct: 16  LHGHDDDVRGICVCN-----DENIATSSRDRTIRVWSLDPSDKRKYTSE----KILLGHT 75

Query: 208 LSVQSVA------SQKSGHLICSGSWDHTIKLWRTDEHQSEGDVSIKKRKKNTQAEESQL 267
             V  +A          G L+ SGS D  + +W                        + +
Sbjct: 76  SFVGPLAWIPPTDEYPEGRLV-SGSMDTFVFVW------------------------NLM 135

Query: 268 EEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRRWDVETGNVLFNHVCGKALNCLDI 327
             +++ TL GH   V+ VA   +E+I S S D +++RW    G ++ +    ++     I
Sbjct: 136 NGENIQTLKGHQMQVTGVA-IDNEDIVSSSVDQTLKRW--RNGQLVESWDAHQSPIQAVI 195

Query: 328 GGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTSWVSDCKWHDKSWFHLLSASYD 387
                 L+ +G SD ++++W  +     + +   S HT  V          F  LSAS+D
Sbjct: 196 RLPSGELV-SGSSDASLKLWKGK-----TSLQTLSGHTDTVRGLAVMPDLGF--LSASHD 255

Query: 388 GKVMLWDLRTAWPLAVIDSHNDKVLSADWWKDDSIVSGGADSKLRI 428
           G + LW L     L ++  H   V S D      IVS   D   +I
Sbjct: 256 GSIRLWALSGEVLLEMV-GHTSLVYSVDAHSSGLIVSASEDRHAKI 255

[Close]

BLAST of Csa4G187290 vs. TAIR10
Match: AT4G15900.1 (AT4G15900.1 pleiotropic regulatory locus 1)

HSP 1 Score: 70.5 bits (171), Expect = 2.9e-12
Identity = 62/234 (26.50%), Postives = 100/234 (42.74%), Query Frame = 1


Query: 200 FKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQSEGDVSIKKRKKNTQAEES 259
           +++++GH   V+SVA   S    C+GS D TIK+W         DV+    K        
Sbjct: 169 YRVIQGHLGWVRSVAFDPSNEWFCTGSADRTIKIW---------DVATGVLK-------- 228

Query: 260 QLEEDSVATLDGHSQSVSSVAWP-KHEEIYSVSWDHSVRRWDVETGNVL---FNHVCGKA 319
                   TL GH + V  +A   +H  ++S   D  V+ WD+E   V+     H+ G  
Sbjct: 229 -------LTLTGHIEQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSG-- 288

Query: 320 LNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTSWVSDCKWHDKSWFHL 379
           + CL +      ++  GG D   R+WD R   T   IF  S H + V    +   +   +
Sbjct: 289 VYCLAL-HPTLDVLLTGGRDSVCRVWDIR---TKMQIFALSGHDNTVCSV-FTRPTDPQV 348

Query: 380 LSASYDGKVMLWDLRTAWPLAVIDSHNDKVLSADWW-KDDSIVSGGADSKLRIS 429
           ++ S+D  +  WDLR    ++ +  H   V +     K+++  S  AD+  + S
Sbjct: 349 VTGSHDTTIKFWDLRYGKTMSTLTHHKKSVRAMTLHPKENAFASASADNTKKFS 371

[Close]

BLAST of Csa4G187290 vs. NCBI nr
Match: gi|449462745|ref|XP_004149101.1| (PREDICTED: ribosome biogenesis protein WDR12 homolog [Cucumis sativus])

HSP 1 Score: 895.6 bits (2313), Expect = 3.5e-257
Identity = 434/434 (100.00%), Postives = 434/434 (100.00%), Query Frame = 1


Query: 1   MDIDGDFEDTSRRVQVRFITKLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60
           MDIDGDFEDTSRRVQVRFITKLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE
Sbjct: 1   MDIDGDFEDTSRRVQVRFITKLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDG 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDG
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDG 120

Query: 121 SCPGFILTGCYDGFGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTI 180
           SCPGFILTGCYDGFGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTI
Sbjct: 121 SCPGFILTGCYDGFGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTI 180

Query: 181 RLWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQ 240
           RLWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQ
Sbjct: 181 RLWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQ 240

Query: 241 SEGDVSIKKRKKNTQAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRRWD 300
           SEGDVSIKKRKKNTQAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRRWD
Sbjct: 241 SEGDVSIKKRKKNTQAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRRWD 300

Query: 301 VETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTS 360
           VETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTS
Sbjct: 301 VETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTS 360

Query: 361 WVSDCKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNDKVLSADWWKDDSIVSGG 420
           WVSDCKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNDKVLSADWWKDDSIVSGG
Sbjct: 361 WVSDCKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNDKVLSADWWKDDSIVSGG 420

Query: 421 ADSKLRISSGIYVL 435
           ADSKLRISSGIYVL
Sbjct: 421 ADSKLRISSGIYVL 434

[Close]

BLAST of Csa4G187290 vs. NCBI nr
Match: gi|659082786|ref|XP_008442030.1| (PREDICTED: ribosome biogenesis protein WDR12 homolog [Cucumis melo])

HSP 1 Score: 871.7 bits (2251), Expect = 5.4e-250
Identity = 420/433 (97.00%), Postives = 426/433 (98.38%), Query Frame = 1


Query: 1   MDIDGDFEDTSRRVQVRFITKLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60
           MDIDGDFEDTSRR+QVRFITKL APFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE
Sbjct: 1   MDIDGDFEDTSRRIQVRFITKLKAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDG 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDG
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDG 120

Query: 121 SCPGFILTGCYDGFGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTI 180
           SCPGFILTGCYDG GRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRT+
Sbjct: 121 SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTL 180

Query: 181 RLWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQ 240
           RLWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQ
Sbjct: 181 RLWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQ 240

Query: 241 SEGDVSIKKRKKNTQAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRRWD 300
           SEGDVSIKKRK N +AEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVR+WD
Sbjct: 241 SEGDVSIKKRKMNNKAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRKWD 300

Query: 301 VETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTS 360
           VETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTS
Sbjct: 301 VETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTS 360

Query: 361 WVSDCKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNDKVLSADWWKDDSIVSGG 420
           WVS CKWH+KSWFHLLSASYDGKVMLWDLRTAWPLAVIDSH DKVLSADWWKDDS+VSGG
Sbjct: 361 WVSACKWHEKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHKDKVLSADWWKDDSVVSGG 420

Query: 421 ADSKLRISSGIYV 434
           ADSKL ISSGIYV
Sbjct: 421 ADSKLHISSGIYV 433

[Close]

BLAST of Csa4G187290 vs. NCBI nr
Match: gi|703073749|ref|XP_010089626.1| (Ribosome biogenesis protein WDR12-like protein [Morus notabilis])

HSP 1 Score: 677.2 bits (1746), Expect = 1.9e-191
Identity = 320/434 (73.73%), Postives = 373/434 (85.94%), Query Frame = 1


Query: 1   MDIDGDFEDTSRRVQVRFITKLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60
           MD++GD ++TSRR+Q RF+TKL  P K PA +IAIPS+LTRLGLST+VNNLL AGNP+WE
Sbjct: 1   MDVNGDADETSRRIQARFVTKLDPPLKAPATSIAIPSSLTRLGLSTIVNNLLQAGNPDWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDG 120
            EPFDFLIDGELVRMSLE+FLLAKGISAEK LEIEY KAV PR+EE+PS+HDDWVSAVDG
Sbjct: 61  PEPFDFLIDGELVRMSLEQFLLAKGISAEKVLEIEYIKAVVPRKEEQPSLHDDWVSAVDG 120

Query: 121 SCPGFILTGCYDGFGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTI 180
           S P FILTGCYD FGRVW+SAG+CTHILEGHS AI+SV IVNP     VT+ATASKD+T+
Sbjct: 121 SSPRFILTGCYDNFGRVWKSAGVCTHILEGHSGAITSVSIVNPEGEERVTVATASKDQTV 180

Query: 181 RLWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQ 240
           RLWK+S ++RVKNP K+RPFK+L+GH+ SVQSV++Q SG ++CSG WD TI LW ++E  
Sbjct: 181 RLWKFSAEERVKNPLKIRPFKLLRGHKASVQSVSAQTSGDMVCSGGWDCTISLWESNETN 240

Query: 241 SEGD-VSIKKRKKNTQAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRRW 300
           +EGD VS+KK++ N +AEESQLE ++V+TL GH+Q VSSV W + E IYS S DHS+RRW
Sbjct: 241 TEGDLVSVKKKRVNDRAEESQLEGEAVSTLVGHTQCVSSVKWLQRETIYSASMDHSIRRW 300

Query: 301 DVETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHT 360
           DVET   L N  CGKALNC+DIGGE S+LIAAGGSDP +RIWDPRKPGTS+P+FQFSSHT
Sbjct: 301 DVETSKDLLNINCGKALNCIDIGGESSTLIAAGGSDPILRIWDPRKPGTSAPVFQFSSHT 360

Query: 361 SWVSDCKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNDKVLSADWWKDDSIVSG 420
           SW+S CKWH+KSWFHLLSASYDGK+MLWDLRTAWPL+VI SH DKVL ADWWK DSIVSG
Sbjct: 361 SWISACKWHNKSWFHLLSASYDGKLMLWDLRTAWPLSVIGSHEDKVLCADWWKGDSIVSG 420

Query: 421 GADSKLRISSGIYV 434
           G DSKL ISSGI V
Sbjct: 421 GVDSKLCISSGISV 434

[Close]

BLAST of Csa4G187290 vs. NCBI nr
Match: gi|225451717|ref|XP_002279575.1| (PREDICTED: ribosome biogenesis protein WDR12 homolog [Vitis vinifera])

HSP 1 Score: 673.3 bits (1736), Expect = 2.8e-190
Identity = 322/437 (73.68%), Postives = 370/437 (84.67%), Query Frame = 1


Query: 1   MDIDGDFEDTSRRVQVRFITKLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60
           M+IDGD E+TSRRVQVRF TKL +PFK P  +IAIPSNLTR+GLS +VNNLL +GNP+W+
Sbjct: 1   MEIDGDVEETSRRVQVRFTTKLQSPFKTPPTSIAIPSNLTRMGLSAIVNNLLKSGNPDWK 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDG 120
            EPFDFLIDGELVRMSLE+FL+AKGISAEK LEIEY KAVAPR++EEPS+HDDWVSAVDG
Sbjct: 61  PEPFDFLIDGELVRMSLEQFLIAKGISAEKILEIEYIKAVAPRKQEEPSLHDDWVSAVDG 120

Query: 121 SCPGFILTGCYDGFGRVWESAGLCTHILEGHSDAISSVCIVNPG---EATNVTLATASKD 180
           S PGFILTGCYDG GR+W++AG CTHILEGH+DAI+SV  ++P       N  +ATASKD
Sbjct: 121 SNPGFILTGCYDGLGRLWKAAGSCTHILEGHNDAITSVKFIDPKGLESVNNSVVATASKD 180

Query: 181 RTIRLWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTD 240
           RT+RLWK+   +R   P K+R FKIL GH  SVQSVA Q +G+++CSGSWD TI LWRTD
Sbjct: 181 RTLRLWKFDAGERHDLPLKIRAFKILHGHNASVQSVAVQPTGNMVCSGSWDCTINLWRTD 240

Query: 241 EHQSEGD-VSIKKRKKNTQAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSV 300
           E   EGD VS+KKRK N +AEESQ E ++V+T+ GH+Q VSSV WP+HE IYS SWDHSV
Sbjct: 241 EFDVEGDLVSVKKRKVNNEAEESQAEGEAVSTIVGHTQCVSSVIWPQHETIYSASWDHSV 300

Query: 301 RRWDVETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFS 360
           RRWDVETG   +N  CGKALNCLD+GGE S+LIAAGGSD T+RIWDPRKPGT +P+FQFS
Sbjct: 301 RRWDVETGKDSWNLFCGKALNCLDVGGESSALIAAGGSDTTLRIWDPRKPGTLTPVFQFS 360

Query: 361 SHTSWVSDCKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNDKVLSADWWKDDSI 420
           SHTSW+S CKWH+KSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHN+KVL ADWWK DS+
Sbjct: 361 SHTSWISACKWHNKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNNKVLCADWWKGDSV 420

Query: 421 VSGGADSKLRISSGIYV 434
           VSGGADSKL ISS I V
Sbjct: 421 VSGGADSKLCISSEIPV 437

[Close]

BLAST of Csa4G187290 vs. NCBI nr
Match: gi|147784893|emb|CAN70824.1| (hypothetical protein VITISV_042345 [Vitis vinifera])

HSP 1 Score: 663.3 bits (1710), Expect = 2.9e-187
Identity = 321/434 (73.96%), Postives = 368/434 (84.79%), Query Frame = 1


Query: 1   MDIDGDFEDTSRRVQVRFITKLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60
           M+IDGD E+TSRRVQVRF TKL +PFK P  +IAIPSNLTR+GLS +VNNLL +GNP+W+
Sbjct: 1   MEIDGDVEETSRRVQVRFTTKLQSPFKTPPTSIAIPSNLTRMGLSAIVNNLLKSGNPDWK 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDG 120
            EPFDFLIDGELVRMSLE+FL+AKGISAEK LEIEY KAVAPR++EEPS+HDDWVSAVDG
Sbjct: 61  PEPFDFLIDGELVRMSLEQFLIAKGISAEKILEIEYIKAVAPRKQEEPSLHDDWVSAVDG 120

Query: 121 SCPGFILTGCYDGFGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTI 180
           S PGFILTGCYDG GR+W++AG CTHILEGH+DAI+SV  ++P       +ATASKDRT+
Sbjct: 121 SNPGFILTGCYDGLGRLWKAAGSCTHILEGHNDAITSVKFIDPK-----VVATASKDRTL 180

Query: 181 RLWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQ 240
           RLWK S    +  P K+R FKIL GH  SVQSVA Q +G+++CSGSWD TI LWRTDE  
Sbjct: 181 RLWKGSA---MIFPLKIRAFKILHGHNASVQSVAVQPTGNMVCSGSWDCTINLWRTDEFD 240

Query: 241 SEGD-VSIKKRKKNTQAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRRW 300
            EGD VS+KKRK N +AEESQ E ++V+T+ GH+Q VSSV WP+HE IYS SWDHSVRRW
Sbjct: 241 VEGDLVSVKKRKVNNEAEESQAEGEAVSTIVGHTQCVSSVIWPQHETIYSASWDHSVRRW 300

Query: 301 DVETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHT 360
           DVETG   +N  CGKALNCLD+GGE S+LIAAGGSD T+RIWDPRKPGT +P+FQFSSHT
Sbjct: 301 DVETGKDSWNLFCGKALNCLDVGGESSALIAAGGSDTTLRIWDPRKPGTLTPVFQFSSHT 360

Query: 361 SWVSDCKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNDKVLSADWWKDDSIVSG 420
           SW+S CKWH+KSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHN+KVL ADWWK DS+VSG
Sbjct: 361 SWISACKWHNKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNNKVLCADWWKGDSVVSG 420

Query: 421 GADSKLRISSGIYV 434
           GADSKL ISS I V
Sbjct: 421 GADSKLCISSEIPV 426

The following BLAST results are available for this feature:

BLAST of Csa4G187290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
WDR12_CHLRE	1.3e-75	37.53	Ribosome biogenesis protein WDR12 homolog OS=Chlamydomonas reinhardtii GN=CHLRED...	[more]
WDR12_XENTR	1.0e-70	37.02	Ribosome biogenesis protein wdr12 OS=Xenopus tropicalis GN=wdr12 PE=2 SV=1	[more]
WDR12_BOVIN	1.4e-69	36.60	Ribosome biogenesis protein WDR12 OS=Bos taurus GN=WDR12 PE=2 SV=1	[more]
WDR12_HUMAN	3.2e-69	37.08	Ribosome biogenesis protein WDR12 OS=Homo sapiens GN=WDR12 PE=1 SV=2	[more]
WDR12_PONAB	3.2e-69	37.32	Ribosome biogenesis protein WDR12 OS=Pongo abelii GN=WDR12 PE=2 SV=1	[more]

BLAST of Csa4G187290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYI3_CUCSA	2.4e-257	100.00	Ribosome biogenesis protein WDR12 homolog OS=Cucumis sativus GN=Csa_4G187290 PE=...	[more]
W9QIE3_9ROSA	1.4e-191	73.73	Ribosome biogenesis protein WDR12 homolog OS=Morus notabilis GN=L484_021019 PE=3...	[more]
D7SVC1_VITVI	2.0e-190	73.68	Ribosome biogenesis protein WDR12 homolog OS=Vitis vinifera GN=VIT_14s0068g00410...	[more]
A5C297_VITVI	2.0e-187	73.96	Ribosome biogenesis protein WDR12 homolog OS=Vitis vinifera GN=VITISV_042345 PE=...	[more]
A0A067KUV1_JATCU	7.7e-187	72.29	Ribosome biogenesis protein WDR12 homolog OS=Jatropha curcas GN=JCGZ_09062 PE=3 ...	[more]

BLAST of Csa4G187290 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G15550.1	1.1e-189	71.20	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G16750.1	2.0e-16	26.49	Transducin family protein / WD-40 repeat family protein	[more]
AT2G43770.1	1.2e-13	27.83	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G18860.1	2.0e-13	26.57	transducin family protein / WD-40 repeat family protein	[more]
AT4G15900.1	2.9e-12	26.50	pleiotropic regulatory locus 1	[more]

BLAST of Csa4G187290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462745\|ref\|XP_004149101.1\|	3.5e-257	100.00	PREDICTED: ribosome biogenesis protein WDR12 homolog [Cucumis sativus]	[more]
gi\|659082786\|ref\|XP_008442030.1\|	5.4e-250	97.00	PREDICTED: ribosome biogenesis protein WDR12 homolog [Cucumis melo]	[more]
gi\|703073749\|ref\|XP_010089626.1\|	1.9e-191	73.73	Ribosome biogenesis protein WDR12-like protein [Morus notabilis]	[more]
gi\|225451717\|ref\|XP_002279575.1\|	2.8e-190	73.68	PREDICTED: ribosome biogenesis protein WDR12 homolog [Vitis vinifera]	[more]
gi\|147784893\|emb\|CAN70824.1\|	2.9e-187	73.96	hypothetical protein VITISV_042345 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR012972	NLE
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR017986	WD40_repeat_dom
IPR019775	WD40_repeat_CS
IPR020472	G-protein_beta_WD-40_rep

Vocabulary: **Biological Process**
Term	Definition
GO:0042254	ribosome biogenesis

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000478	endonucleolytic cleavage involved in rRNA processing
biological_process	GO:0000466	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0051604	protein maturation
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0001510	RNA methylation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0080008	Cul4-RING E3 ubiquitin ligase complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0030687	preribosome, large subunit precursor
cellular_component	GO:0070545	PeBoW complex
molecular_function	GO:0005515	protein binding
molecular_function	GO:0043021	ribonucleoprotein complex binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU085038	cucumber EST collection version 3.0	transcribed_cluster
CU091429	cucumber EST collection version 3.0	transcribed_cluster
CU109835	cucumber EST collection version 3.0	transcribed_cluster
CU132766	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G187290.1	Csa4G187290.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU091429	CU091429	transcribed_cluster
CU132766	CU132766	transcribed_cluster
CU109835	CU109835	transcribed_cluster
CU085038	CU085038	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 265..300 score: 0.012coord: 144..184 score: 1.1E-5coord: 199..234 score: 5.2E-7coord: 351..388 score: 0.025coord: 313..342 score: 0.
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 303..342 score: 0.22coord: 262..300 score: 3.9E-5coord: 141..184 score: 6.0E-5coord: 196..235 score: 1.3E-6coord: 101..139 score: 2.5coord: 391..429 score: 0.079coord: 348..388 score: 3.
IPR001680	WD40 repeat	PROFILE	PS50082	WD_REPEATS_2	coord: 355..397 score: 10.575coord: 326..342 score: 8.704coord: 203..244 score: 12.079coord: 269..309 score: 11.778coord: 148..193 score: 10
IPR012972	NLE	PFAM	PF08154	NLE	coord: 14..81 score: 1.1
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	G3DSA:2.130.10.10		coord: 108..427 score: 8.1
IPR017986	WD40-repeat-containing domain	PROFILE	PS50294	WD_REPEATS_REGION	coord: 148..427 score: 31
IPR017986	WD40-repeat-containing domain	unknown	SSF50978	WD40 repeat-like	coord: 109..427 score: 3.89
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 375..389 scor
IPR020472	G-protein beta WD-40 repeat	PRINTS	PR00320	GPROTEINBRPT	coord: 375..389 score: 6.5E-7coord: 171..185 score: 6.5E-7coord: 222..236 score: 6.
None	No IPR available	PANTHER	PTHR19855	WD40 REPEAT PROTEIN 12, 37	coord: 1..431 score: 6.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G187290	MELO3C008857	Melon (DHL92) v3.5.1	cumeB324
Csa4G187290	MELO3C008857.2	Melon (DHL92) v3.6.1	cumedB311
Csa4G187290	CSPI04G10860	Wild cucumber (PI 183967)	cpicuB183
Csa4G187290	Cucsa.334570	Cucumber (Gy14) v1	cgycuB473
Csa4G187290	CsGy4G010440	Cucumber (Gy14) v2	cgybcuB168

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G187290	Watermelon (97103) v2	cuwmbB275
Csa4G187290	Watermelon (97103) v2	cuwmbB277
Csa4G187290	Watermelon (97103) v1	cuwmB295