Csa4G172560 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G172560
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 8869398 .. 8869658 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAGTTGGCATGATCTTCTTTCACAAATACCAGCCAGATGCTGGCTTCTGTGTTCAAATTATGCGAAAGAGCTGATACTTCTCTGTTGGCGTGATATCCCACTTAGTCTCGGGGCAAGCCACTTTCTTCAACGCACTCTCCAAGTCTCTCTTGGGGTCTTGAAAATATCATGTCCAATTTCGTTTGCCTCTAAACCAAAGAACTCATTGATGGCGTTTTGTCCAAAATCTACTTTTTGCCCTTTGACCATGGCATAA

mRNA sequence

ATGGCTAGTTGGCATGATCTTCTTTCACAAATACCAGCCAGATGCTGGCTTCTGTGTTCAAATTATGCGAAAGAGCTGATACTTCTCTGTTGGCGTGATATCCCACTTAGTCTCGGGGCAAGCCACTTTCTTCAACGCACTCTCCAAGTCTCTCTTGGGGTCTTGAAAATATCATGTCCAATTTCGTTTGCCTCTAAACCAAAGAACTCATTGATGGCGTTTTGTCCAAAATCTACTTTTTGCCCTTTGACCATGGCATAA

Coding sequence (CDS)

ATGGCTAGTTGGCATGATCTTCTTTCACAAATACCAGCCAGATGCTGGCTTCTGTGTTCAAATTATGCGAAAGAGCTGATACTTCTCTGTTGGCGTGATATCCCACTTAGTCTCGGGGCAAGCCACTTTCTTCAACGCACTCTCCAAGTCTCTCTTGGGGTCTTGAAAATATCATGTCCAATTTCGTTTGCCTCTAAACCAAAGAACTCATTGATGGCGTTTTGTCCAAAATCTACTTTTTGCCCTTTGACCATGGCATAA

Protein sequence

MASWHDLLSQIPARCWLLCSNYAKELILLCWRDIPLSLGASHFLQRTLQVSLGVLKISCPISFASKPKNSLMAFCPKSTFCPLTMA*
Homology
[Close]
BLAST of Csa4G172560 vs. TrEMBL
Match: A0A0A0KWE6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G172560 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.1e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 

Query: 1  MASWHDLLSQIPARCWLLCSNYAKELILLCWRDIPLSLGASHFLQRTLQVSLGVLKISCP 60
          MASWHDLLSQIPARCWLLCSNYAKELILLCWRDIPLSLGASHFLQRTLQVSLGVLKISCP
Sbjct: 1  MASWHDLLSQIPARCWLLCSNYAKELILLCWRDIPLSLGASHFLQRTLQVSLGVLKISCP 60

Query: 61 ISFASKPKNSLMAFCPKSTFCPLTMA 87
          ISFASKPKNSLMAFCPKSTFCPLTMA
Sbjct: 61 ISFASKPKNSLMAFCPKSTFCPLTMA 86

[Close]
BLAST of Csa4G172560 vs. NCBI nr
Match: gi|700198710|gb|KGN53868.1| (hypothetical protein Csa_4G172560 [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 3.0e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 

Query: 1  MASWHDLLSQIPARCWLLCSNYAKELILLCWRDIPLSLGASHFLQRTLQVSLGVLKISCP 60
          MASWHDLLSQIPARCWLLCSNYAKELILLCWRDIPLSLGASHFLQRTLQVSLGVLKISCP
Sbjct: 1  MASWHDLLSQIPARCWLLCSNYAKELILLCWRDIPLSLGASHFLQRTLQVSLGVLKISCP 60

Query: 61 ISFASKPKNSLMAFCPKSTFCPLTMA 87
          ISFASKPKNSLMAFCPKSTFCPLTMA
Sbjct: 61 ISFASKPKNSLMAFCPKSTFCPLTMA 86

The following BLAST results are available for this feature:
BLAST of Csa4G172560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWE6_CUCSA2.1e-43100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G172560 PE=4 SV=1[more]
BLAST of Csa4G172560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198710|gb|KGN53868.1|3.0e-43100.00hypothetical protein Csa_4G172560 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G172560.1Csa4G172560.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G172560Silver-seed gourdcarcuB0213
Csa4G172560Silver-seed gourdcarcuB0313
Csa4G172560Wax gourdcuwgoB392
Csa4G172560Cucumber (Gy14) v1cgycuB246
Csa4G172560Cucurbita maxima (Rimu)cmacuB868
Csa4G172560Cucurbita moschata (Rifu)cmocuB654
Csa4G172560Cucurbita moschata (Rifu)cmocuB857
Csa4G172560Cucurbita pepo (Zucchini)cpecuB080
Csa4G172560Cucurbita pepo (Zucchini)cpecuB489
Csa4G172560Cucumber (Gy14) v2cgybcuB165
Csa4G172560Melon (DHL92) v3.6.1cumedB313