Csa4G172550 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G172550
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 8862879 .. 8863256 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCAATGAGGTTTTCTCACATGGTGCTGTGGAGATCGCATCGCTAGATGAAACCAACGTGTTCAAGATCTACAGACAAAGACTCAAGGCATACTATGACGATGAAAATCACATCAAAGTCTTCGTGGATTTAAAGTAATATTGCCTTCATAAAAACTTCATGCATTTGTAAATTTTTACGAACATGTTAATTACAAGCGTATTGTTTTTTTTGTATCATTTTACTTTCTTTATTTTTATTGTTTTAATTTAATTTTATTATTTTCTTTGTCGCTTTGTTTATTGCTTTGTTTATCGCTTTCTTTTACCACTTTCTAGAGTAGCGTATCTTGTGCCTACTAAGGAAAAACCAAGAGAAGCAATGTGTAAGGTTTAG

mRNA sequence

ATGGTCAATGAGGTTTTCTCACATGGTGCTGTGGAGATCGCATCGCTAGATGAAACCAACGTGTTCAAGATCTACAGACAAAGACTCAAGGCATACTATGACGATGAAAATCACATCAAAGTCTTCGTGGATTTAAAAGTAGCGTATCTTGTGCCTACTAAGGAAAAACCAAGAGAAGCAATGTGTAAGGTTTAG

Coding sequence (CDS)

ATGGTCAATGAGGTTTTCTCACATGGTGCTGTGGAGATCGCATCGCTAGATGAAACCAACGTGTTCAAGATCTACAGACAAAGACTCAAGGCATACTATGACGATGAAAATCACATCAAAGTCTTCGTGGATTTAAAAGTAGCGTATCTTGTGCCTACTAAGGAAAAACCAAGAGAAGCAATGTGTAAGGTTTAG

Protein sequence

MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLKVAYLVPTKEKPREAMCKV*

Homology

[Close]

BLAST of Csa4G172550 vs. TrEMBL
Match: A0A0A0KZS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G172550 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 3.2e-28
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLKVAYLVPTKEKPREA 60
          MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLKVAYLVPTKEKPREA
Sbjct: 1  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLKVAYLVPTKEKPREA 60

Query: 61 MCKV 65
          MCKV
Sbjct: 61 MCKV 64

[Close]

BLAST of Csa4G172550 vs. NCBI nr
Match: gi|700198709|gb|KGN53867.1| (hypothetical protein Csa_4G172550 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 4.6e-28
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLKVAYLVPTKEKPREA 60
          MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLKVAYLVPTKEKPREA
Sbjct: 1  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLKVAYLVPTKEKPREA 60

Query: 61 MCKV 65
          MCKV
Sbjct: 61 MCKV 64

[Close]

BLAST of Csa4G172550 vs. NCBI nr
Match: gi|659113193|ref|XP_008456447.1| (PREDICTED: uncharacterized protein LOC103496390 [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 7.6e-07
Identity = 28/46 (60.87%), Postives = 37/46 (80.43%), Query Frame = 1


Query: 1   MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLK 47
           +V E+ +HGA+EIASL+  N+FK+  QRLK YY+DEN IK+ VDLK
Sbjct: 136 VVKEILTHGAMEIASLNGDNMFKVNGQRLKVYYEDENCIKISVDLK 181

The following BLAST results are available for this feature:

BLAST of Csa4G172550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZS1_CUCSA	3.2e-28	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G172550 PE=4 SV=1	[more]

BLAST of Csa4G172550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198709\|gb\|KGN53867.1\|	4.6e-28	100.00	hypothetical protein Csa_4G172550 [Cucumis sativus]	[more]
gi\|659113193\|ref\|XP_008456447.1\|	7.6e-07	60.87	PREDICTED: uncharacterized protein LOC103496390 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G172550.1	Csa4G172550.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G172550	CSPI04G10830	Wild cucumber (PI 183967)	cpicuB182

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G172550	Silver-seed gourd	carcuB0213
Csa4G172550	Silver-seed gourd	carcuB0313
Csa4G172550	Wax gourd	cuwgoB392
Csa4G172550	Cucumber (Gy14) v1	cgycuB246
Csa4G172550	Cucurbita maxima (Rimu)	cmacuB868
Csa4G172550	Cucurbita moschata (Rifu)	cmocuB654
Csa4G172550	Cucurbita moschata (Rifu)	cmocuB857
Csa4G172550	Cucurbita pepo (Zucchini)	cpecuB080
Csa4G172550	Cucurbita pepo (Zucchini)	cpecuB489
Csa4G172550	Cucumber (Gy14) v2	cgybcuB165
Csa4G172550	Melon (DHL92) v3.6.1	cumedB313