Csa4G172530 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G172530
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 8836811 .. 8837050 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACCGCCTGTGTCTAAGACATCCTCAACTCCCAGCCGCAATCGAAGCTTCAACCGTCTTCGTCGTCCCTTCACGCAAGATTTCCACGCCGCCATTCCTCTTCATTGGTCAGCCATTCTTCGCTCACGACTTATCGGCATTCCAGATCGCTCACGACACTGGTTGCTGATTTTGTCTCAGATCTGTCCTCGCGGCAGCAAATCCAGCTGCATCCTGTGGCCGCCGTTCGATCCTTGA

mRNA sequence

ATGGTACCGCCTGTGTCTAAGACATCCTCAACTCCCAGCCGCAATCGAAGCTTCAACCGTCTTCGTCGTCCCTTCACGCAAGATTTCCACGCCGCCATTCCTCTTCATTGGTCAGCCATTCTTCGCTCACGACTTATCGGCATTCCAGATCGCTCACGACACTGGTTGCTGATTTTGTCTCAGATCTGTCCTCGCGGCAGCAAATCCAGCTGCATCCTGTGGCCGCCGTTCGATCCTTGA

Coding sequence (CDS)

ATGGTACCGCCTGTGTCTAAGACATCCTCAACTCCCAGCCGCAATCGAAGCTTCAACCGTCTTCGTCGTCCCTTCACGCAAGATTTCCACGCCGCCATTCCTCTTCATTGGTCAGCCATTCTTCGCTCACGACTTATCGGCATTCCAGATCGCTCACGACACTGGTTGCTGATTTTGTCTCAGATCTGTCCTCGCGGCAGCAAATCCAGCTGCATCCTGTGGCCGCCGTTCGATCCTTGA

Protein sequence

MVPPVSKTSSTPSRNRSFNRLRRPFTQDFHAAIPLHWSAILRSRLIGIPDRSRHWLLILSQICPRGSKSSCILWPPFDP*

Homology

[Close]

BLAST of Csa4G172530 vs. TrEMBL
Match: A0A0A0KW63_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G172530 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.3e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1  MVPPVSKTSSTPSRNRSFNRLRRPFTQDFHAAIPLHWSAILRSRLIGIPDRSRHWLLILS 60
          MVPPVSKTSSTPSRNRSFNRLRRPFTQDFHAAIPLHWSAILRSRLIGIPDRSRHWLLILS
Sbjct: 1  MVPPVSKTSSTPSRNRSFNRLRRPFTQDFHAAIPLHWSAILRSRLIGIPDRSRHWLLILS 60

Query: 61 QICPRGSKSSCILWPPFDP 80
          QICPRGSKSSCILWPPFDP
Sbjct: 61 QICPRGSKSSCILWPPFDP 79

[Close]

BLAST of Csa4G172530 vs. NCBI nr
Match: gi|700198707|gb|KGN53865.1| (hypothetical protein Csa_4G172530 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 1.9e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1  MVPPVSKTSSTPSRNRSFNRLRRPFTQDFHAAIPLHWSAILRSRLIGIPDRSRHWLLILS 60
          MVPPVSKTSSTPSRNRSFNRLRRPFTQDFHAAIPLHWSAILRSRLIGIPDRSRHWLLILS
Sbjct: 1  MVPPVSKTSSTPSRNRSFNRLRRPFTQDFHAAIPLHWSAILRSRLIGIPDRSRHWLLILS 60

Query: 61 QICPRGSKSSCILWPPFDP 80
          QICPRGSKSSCILWPPFDP
Sbjct: 61 QICPRGSKSSCILWPPFDP 79

[Close]

BLAST of Csa4G172530 vs. NCBI nr
Match: gi|659130331|ref|XP_008465113.1| (PREDICTED: uncharacterized protein LOC103502803 isoform X1 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 7.4e-12
Identity = 39/49 (79.59%), Postives = 40/49 (81.63%), Query Frame = 1


Query: 31  AAIPLHWSAILRSRLIGIPDRSRHWLLILSQICPRGSKSSCILWPPFDP 80
           AAIPLH SAI+ S LIGI DRS HWLLILSQI PRGS S CIL PPFDP
Sbjct: 62  AAIPLHQSAIIGSPLIGISDRSPHWLLILSQIPPRGSNSGCILSPPFDP 110

[Close]

BLAST of Csa4G172530 vs. NCBI nr
Match: gi|659130333|ref|XP_008465114.1| (PREDICTED: uncharacterized protein LOC103502803 isoform X2 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 7.4e-12
Identity = 39/49 (79.59%), Postives = 40/49 (81.63%), Query Frame = 1


Query: 31  AAIPLHWSAILRSRLIGIPDRSRHWLLILSQICPRGSKSSCILWPPFDP 80
           AAIPLH SAI+ S LIGI DRS HWLLILSQI PRGS S CIL PPFDP
Sbjct: 62  AAIPLHQSAIIGSPLIGISDRSPHWLLILSQIPPRGSNSGCILSPPFDP 110

[Close]

BLAST of Csa4G172530 vs. NCBI nr
Match: gi|659130335|ref|XP_008465115.1| (PREDICTED: uncharacterized protein LOC103502803 isoform X3 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 7.4e-12
Identity = 39/49 (79.59%), Postives = 40/49 (81.63%), Query Frame = 1


Query: 31  AAIPLHWSAILRSRLIGIPDRSRHWLLILSQICPRGSKSSCILWPPFDP 80
           AAIPLH SAI+ S LIGI DRS HWLLILSQI PRGS S CIL PPFDP
Sbjct: 62  AAIPLHQSAIIGSPLIGISDRSPHWLLILSQIPPRGSNSGCILSPPFDP 110

[Close]

BLAST of Csa4G172530 vs. NCBI nr
Match: gi|659130341|ref|XP_008465118.1| (PREDICTED: uncharacterized protein LOC103502803 isoform X5 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 7.4e-12
Identity = 39/49 (79.59%), Postives = 40/49 (81.63%), Query Frame = 1


Query: 31  AAIPLHWSAILRSRLIGIPDRSRHWLLILSQICPRGSKSSCILWPPFDP 80
           AAIPLH SAI+ S LIGI DRS HWLLILSQI PRGS S CIL PPFDP
Sbjct: 62  AAIPLHQSAIIGSPLIGISDRSPHWLLILSQIPPRGSNSGCILSPPFDP 110

The following BLAST results are available for this feature:

BLAST of Csa4G172530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW63_CUCSA	1.3e-39	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G172530 PE=4 SV=1	[more]

BLAST of Csa4G172530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198707\|gb\|KGN53865.1\|	1.9e-39	100.00	hypothetical protein Csa_4G172530 [Cucumis sativus]	[more]
gi\|659130331\|ref\|XP_008465113.1\|	7.4e-12	79.59	PREDICTED: uncharacterized protein LOC103502803 isoform X1 [Cucumis melo]	[more]
gi\|659130333\|ref\|XP_008465114.1\|	7.4e-12	79.59	PREDICTED: uncharacterized protein LOC103502803 isoform X2 [Cucumis melo]	[more]
gi\|659130335\|ref\|XP_008465115.1\|	7.4e-12	79.59	PREDICTED: uncharacterized protein LOC103502803 isoform X3 [Cucumis melo]	[more]
gi\|659130341\|ref\|XP_008465118.1\|	7.4e-12	79.59	PREDICTED: uncharacterized protein LOC103502803 isoform X5 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU119521	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G172530.1	Csa4G172530.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU119521	CU119521	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G172530	Wax gourd	cuwgoB392
Csa4G172530	Cucumber (Gy14) v1	cgycuB246
Csa4G172530	Cucurbita maxima (Rimu)	cmacuB666
Csa4G172530	Cucurbita maxima (Rimu)	cmacuB868
Csa4G172530	Cucurbita moschata (Rifu)	cmocuB654
Csa4G172530	Cucurbita moschata (Rifu)	cmocuB857
Csa4G172530	Watermelon (Charleston Gray)	cuwcgB308
Csa4G172530	Watermelon (97103) v1	cuwmB344
Csa4G172530	Cucurbita pepo (Zucchini)	cpecuB080
Csa4G172530	Cucurbita pepo (Zucchini)	cpecuB489
Csa4G172530	Cucumber (Gy14) v2	cgybcuB165
Csa4G172530	Melon (DHL92) v3.6.1	cumedB313
Csa4G172530	Silver-seed gourd	carcuB0213
Csa4G172530	Silver-seed gourd	carcuB0313