Csa4G171520 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G171520
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionATP-binding cassette sub-family A member; contains IPR026082 (ABC transporter A, ABCA)
LocationChr4 : 8786092 .. 8789917 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCCTCTTGTGCTTTTTAGGTATGGAGCGATTGTAATGGATGATCAGAATAGTGATGGCAGTATAGGATATACAGTACTGCACAATTGTTCTTGTCAGCATTCTGCCCCAACCTTTATCAATATAGTGGACGCTGCAATTCTAAGGCTTGCTACTGGTGACCAGAATATGACTATTCAAACACGAAATCACCCTCTCCCCATGACAAAAAGCCAGCGCTTGCAACGACATGTATGTGATTTTTTCCTCTGAATATGAGGTGTACATTTGCTTTAATACTCAGATAAGGATGACAGGCTAGTATATTAGTATGTTCTGCTAGTCCTTTGTCCTGTGCATCCATCTTCTGTAGTTTCCAGAATCATAATGGAAAGTTCTTTATTAGTCTCTTAGCAAGAATAAAAATAAATAAATTAGCCTTGTGATTAGATGTTCTGCCCAATTCATCCCTTATACTTTTTAGAATTTTAATAGGAAAACCTATTGAGATATCCGAGTAATTAGGGCGCTTTGGGTGTGTCAACCTAGTTGAATTATTTGGGTTTACATGGTGGTTTCTAGTCTTTAGTCTTATAGTTTCCTTGTTTATTATGTCTCATTGTAATTTGAACATTAGTCTCTTTTCATTTCATGAATGAAAAGTGTTACGTGCTGTATTATCCTTTCTAGTTATTTCTAGTCTTGGAAACGTAAATAAAGTATGATCAGGGGCAAGACTGTACCCTTGGGACTAGACAAAGGTAGTGAACCTATCAAACCACGCTCTGGGTGACTGTTTCAGTTGCAAACACACTTCTCATGTGGTGTGTGGTAAATTAAAGAAAATATATTTACTATCGATTGCTTCATTGCTCCTACATGCATCCTTCTCGCATACTAACTTGCCCTAGCTTGTGGAATGTACTAAATACTGGGTTTTTTTTGCAAATCTTATAGTATCTATTAGATTTTGTACGAGAACGATGTGCTCTATTATCCTTTCCAGTTATTTTTGTCAGTGTTTATGTACGCTTCAATCAAGAAGAATGCTATCATTTTGTAGGATCTGGATGCTTTCGCTGCTGCTATCATCATTAATATAGCATTCTGTTTTATTCCTGCATCGTTTGCTGTCTCTCTTGTGAAGGTAATGCAATAATTATAGATCCCTTTTAATTATAGAATATTGTTTTTAATTAAAAAATTACATAGTGTTCGTCATGGTTTGACAGTTCCATTTAGTCTCAGACTCTCAATGGTCAATCTTCAATTTAATCTTTATTCTTTGAGCTTGGTTTCCAATTTACATTTGCTCTATATGTGTAATTTTTATGTGTAATTTTACAAGTCCAAATTCAGTCCCTATGGTGTGGTGATGTAGTCAAACATCAAAAATCGTTCCAACCATAAAGAATTTTTGGTGAGAATAAGCTAATGTTCTTATTTGGCTAAATTTATTTGTTTACTCTTCTGGGGAGTATCAGGGTTTAAGGTGGAGTAAAAAATCTCAGAAAATATGTCAAATTTTCAATTGAGTATATGATGTGCAAATCTCAGTATGAAAGCATATGCAATTAGAGGTAGTATATCTATTTGGTAAATCAAGGTTGGGTCAGCAGGGACTAATGTATGCATTTCAAATCATTCAAAGCATTATTTGTTTCCTTTCATTTGATTCAATGATTCTCTTTGATCTAGGGTTTTATTAACATTTCGAATTAAATACATATATAGAACAAAATCTGGGGTTTCTTTCAAATATCTCATGATTTTAAACACAGCCTTAAAATGAGTGGGCAAGATAAATAGATCAGTCTATCTATTAGCTTTTGGTCTTGGTCTTTGTCCTTTGGTCTTGCCATTTTGCAACTTCATATTAGGGTCGGTACGAATTTATATTGTCCAACAACCAAGTAAGCCCATCAGTAGTCAGTGATTACTTTTTTCAAATTATTCAAACTAAGCTCTTCGAGATTGTTTGGGATCATATAAATATTTTTTTAAGATGCAAACTCTAATTTTCAAGTTTCATTACAAATTTGGGTGGTGGACTCAGATTATTTTCCTTTGCATTGGTGCACTGAGTTTTTAGAACGCTACTGAGTTTCTTCTTGTCAGCCTTAAAAAGAATTCATCAGCCATATTTATGGGATATAAGTAAGAATTGCAAAATCAGTTAACCCTTCATAGGAAAGCTGTAAAGAAATAGTTAGATGATATAATATTAAATATTTTGTCACCTATAAGTTTAATCTTGAGTCAATTGTGATTTATCATGGTATCAAAACAGGTAATCCAAAGAGGTGCCCTATGTCCAAACTTTTGCAATTGTATTTCCTCACCAATTAATATTGATTTCCATTTTTAGGTTTTCTTCATATTTCAAGCCCATGAGGGGGAATATTAGATGATATAATACTAAATTTGCTTTCAACCATTAACTTAATTTTTTTGTCAACTGGTGGTTTAAGAAAAATATTGTCTAAATGACCTTTATTGCGAGGTAAAGGGTTAAATAGCTAAACAGAAACCAAAAGAAAATCCAAGAATGATCCAACAACCATCAGAGTGCTTAAGATGCCACATTAAGCATTCTTTAACATCTAGGGGATGGGATGAACAAAGCCCTCTAGTTTTTATTTCCTCATTTGTTCGAATTATCCCCAATGAGAAACCATTTGGTAGCTGTTGCATGGTCTTAGTTTGTGTCCTTTCCTTTGTTGTGTCTCCAGCATGCTTTGTCCAATAGGGAAATGGCAAAAATTGTCAGCAAAAAAGACTTGGTACGGGAACAAAAATTATAGAAAATGATAACAAAAATCTATATAAATGCATTTGAACTTATTTATTCGATTGTAAAGGATTTGTTATTTTTTTGAATGATTATCTTTTGCTCAAATTGCGTTAGAAAAAATAATCTCAATAGAGATAAAGTATCATTAAAAAAAATCACATTTAACATATTTGTCAAATAGACTAGTTGTTATTTTAATATACCACATGATAAAAATATCTAAACTTATGCAGGAACGTGAAACAAAAGCTAAACACCAGCAAATGATCAGTGGGGTAAGAAATCTCTTTTCTTTTTCCATATTTGTAAAATCTATAAACCCTGACTGGTCTTCAAACTACATTATGTTACCAGGTTTCAATGCTTTCATATTGGATATCTACTTACCTATGGGACGCTATCAGTTTCTTGGTTCCTACTTGTTTAGCATTTGTACTCTTTTACATCTTTGGTACATCCATTCTCTTCTAATTATTCATTTTCCAGACTTTTGATTATTATAAGTTTTTATTATTCCAGTAAGTTTGTTACATGATTTTGCATCTCTTTCTCACGCTTGCTTTTTCTTCAAAATTGATGTCAGTTACTTCAATTAACTTTTGTGGAGGGCTTTGGGATCTTATATTTATTCTTCTCACATTTTCTTATTTGAAAAAATGTGTTCAGGTATGGATCAATTCATTGGTAAAGGTAGATTTCTTGCGACGGCTATTATATTTTTGGAATATGGACTGGCCATTGCATCATCAACATATTGTCTTACATTTTTCTTTTTGGACCATACTGTGGCTCAGGTAGAAGAAAAATCACCTTCTCAACCGTGTATAAAAACAAATTGTATCAACCATCATTATATATCAAAATATTGTCTCATTTTCTGTGCAGAATGTGGTTTTGTCGGTCCACTTCTTCACTGGACTTATTCTTATGGTTATTTCATTCATTATGGGGCTTATTGAAACCATGGCAAAAACAAATTCTTTTCTTAAGGTTGGTTCTCTTGACGTATTTGTTTATATTGAGTATTCTCCTAAATGGTTTGTTTTTTAG

mRNA sequence

ATGGTTCCTCTTGTGCTTTTTAGGTATGGAGCGATTGTAATGGATGATCAGAATAGTGATGGCAGTATAGGATATACAGTACTGCACAATTGTTCTTGTCAGCATTCTGCCCCAACCTTTATCAATATAGTGGACGCTGCAATTCTAAGGCTTGCTACTGGTGACCAGAATATGACTATTCAAACACGAAATCACCCTCTCCCCATGACAAAAAGCCAGCGCTTGCAACGACATGATCTGGATGCTTTCGCTGCTGCTATCATCATTAATATAGCATTCTGTTTTATTCCTGCATCGTTTGCTGTCTCTCTTGTGAAGGAACGTGAAACAAAAGCTAAACACCAGCAAATGATCAGTGGGGTTTCAATGCTTTCATATTGGATATCTACTTACCTATGGGACGCTATCAGTTTCTTGGTTCCTACTTGTTTAGCATTTGTACTCTTTTACATCTTTGGTATGGATCAATTCATTGGTAAAGGTAGATTTCTTGCGACGGCTATTATATTTTTGGAATATGGACTGGCCATTGCATCATCAACATATTGTCTTACATTTTTCTTTTTGGACCATACTGTGGCTCAGAATGTGGTTTTGTCGGTCCACTTCTTCACTGGACTTATTCTTATGGTTATTTCATTCATTATGGGGCTTATTGAAACCATGGCAAAAACAAATTCTTTTCTTAAGGTTGGTTCTCTTGACGTATTTGTTTATATTGAGTATTCTCCTAAATGGTTTGTTTTTTAG

Coding sequence (CDS)

ATGGTTCCTCTTGTGCTTTTTAGGTATGGAGCGATTGTAATGGATGATCAGAATAGTGATGGCAGTATAGGATATACAGTACTGCACAATTGTTCTTGTCAGCATTCTGCCCCAACCTTTATCAATATAGTGGACGCTGCAATTCTAAGGCTTGCTACTGGTGACCAGAATATGACTATTCAAACACGAAATCACCCTCTCCCCATGACAAAAAGCCAGCGCTTGCAACGACATGATCTGGATGCTTTCGCTGCTGCTATCATCATTAATATAGCATTCTGTTTTATTCCTGCATCGTTTGCTGTCTCTCTTGTGAAGGAACGTGAAACAAAAGCTAAACACCAGCAAATGATCAGTGGGGTTTCAATGCTTTCATATTGGATATCTACTTACCTATGGGACGCTATCAGTTTCTTGGTTCCTACTTGTTTAGCATTTGTACTCTTTTACATCTTTGGTATGGATCAATTCATTGGTAAAGGTAGATTTCTTGCGACGGCTATTATATTTTTGGAATATGGACTGGCCATTGCATCATCAACATATTGTCTTACATTTTTCTTTTTGGACCATACTGTGGCTCAGAATGTGGTTTTGTCGGTCCACTTCTTCACTGGACTTATTCTTATGGTTATTTCATTCATTATGGGGCTTATTGAAACCATGGCAAAAACAAATTCTTTTCTTAAGGTTGGTTCTCTTGACGTATTTGTTTATATTGAGTATTCTCCTAAATGGTTTGTTTTTTAG

Protein sequence

MVPLVLFRYGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPLPMTKSQRLQRHDLDAFAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLKVGSLDVFVYIEYSPKWFVF*
Homology
[Close]
BLAST of Csa4G171520 vs. Swiss-Prot
Match: AB1A_ARATH (ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1 PE=2 SV=2)

HSP 1 Score: 345.5 bits (885), Expect = 4.8e-94
Identity = 163/223 (73.09%), Postives = 194/223 (87.00%), Query Frame = 1 

Query: 8    RYGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPL 67
            RYG+I+MD Q+ DGS+GYTVLHN +CQH+ P +IN++ AAILRLATG++NMTIQTRNHPL
Sbjct: 1101 RYGSILMDGQHPDGSLGYTVLHNGTCQHAGPIYINVMHAAILRLATGNKNMTIQTRNHPL 1160

Query: 68   PMTKSQRLQRHDLDAFAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISGVSMLSYW 127
            P TK+QR+QRHDLDAF+AAII+NIAF FIPASFAV +VKERE KAKHQQ+ISGVS+LSYW
Sbjct: 1161 PPTKTQRIQRHDLDAFSAAIIVNIAFSFIPASFAVPIVKEREVKAKHQQLISGVSVLSYW 1220

Query: 128  ISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFF 187
            +STY+WD ISFL P+  A +LFY FG++QFIG GRFL T ++ LEYGLAIASSTYCLTFF
Sbjct: 1221 LSTYVWDFISFLFPSTFAIILFYAFGLEQFIGIGRFLPTVLMLLEYGLAIASSTYCLTFF 1280

Query: 188  FLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLK 231
            F +H++AQNV+L VHFF+GLILMVISF+MGLI   A  NS+LK
Sbjct: 1281 FTEHSMAQNVILMVHFFSGLILMVISFVMGLIPATASANSYLK 1323

[Close]
BLAST of Csa4G171520 vs. Swiss-Prot
Match: ABCA2_RAT (ATP-binding cassette sub-family A member 2 OS=Rattus norvegicus GN=Abca2 PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-25
Identity = 71/214 (33.18%), Postives = 110/214 (51.40%), Query Frame = 1 

Query: 27   VLHNCSCQHSAPTFINIVDAAILR--LATGDQNMT---IQTRNHPLPMTKSQRLQRHDLD 86
            VL+N    HS PT++N ++ AILR  L     N     I   NHP+  T +     + L 
Sbjct: 1730 VLYNNKGYHSMPTYLNSLNNAILRANLPKSKGNPAAYGITVTNHPMNKTSASLSLDYLLQ 1789

Query: 87   A--FAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISGVSMLSYWISTYLWDAISFL 146
                  AI I +A  F+PASF V LV E+ TKAKH Q +SG + + YW++ Y+WD +++L
Sbjct: 1790 GTDVVIAIFIIVAMSFVPASFVVFLVAEKSTKAKHLQFVSGCNPVIYWLANYVWDMLNYL 1849

Query: 147  VPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVL 206
            VP     ++ ++F +  +     F A   +FL YG +I    Y  +F+F   + A   ++
Sbjct: 1850 VPATCCIIILFVFDLPAYTSPTNFPAVLSLFLLYGWSITPIMYPASFWFEVPSSAYVFLI 1909

Query: 207  SVHFFTGLILMVISFIMGLIE---TMAKTNSFLK 231
             ++ F G+   V +F++ L E    +   NS+LK
Sbjct: 1910 VINLFIGITATVATFLLQLFEHDKDLKVVNSYLK 1943

[Close]
BLAST of Csa4G171520 vs. Swiss-Prot
Match: ABCA2_MOUSE (ATP-binding cassette sub-family A member 2 OS=Mus musculus GN=Abca2 PE=1 SV=4)

HSP 1 Score: 117.9 bits (294), Expect = 1.6e-25
Identity = 71/214 (33.18%), Postives = 110/214 (51.40%), Query Frame = 1 

Query: 27   VLHNCSCQHSAPTFINIVDAAILR--LATGDQNMT---IQTRNHPLPMTKSQRLQRHDLD 86
            VL+N    HS PT++N ++ AILR  L     N     I   NHP+  T +     + L 
Sbjct: 1730 VLYNNKGYHSMPTYLNSLNNAILRANLPKSKGNPAAYGITVTNHPMNKTSASLSLDYLLQ 1789

Query: 87   A--FAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISGVSMLSYWISTYLWDAISFL 146
                  AI I +A  F+PASF V LV E+ TKAKH Q +SG + + YW++ Y+WD +++L
Sbjct: 1790 GTDVVIAIFIIVAMSFVPASFVVFLVAEKSTKAKHLQFVSGCNPVIYWLANYVWDMLNYL 1849

Query: 147  VPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVL 206
            VP     ++ ++F +  +     F A   +FL YG +I    Y  +F+F   + A   ++
Sbjct: 1850 VPATCCVIILFVFDLPAYTSPTNFPAVLSLFLLYGWSITPIMYPASFWFEVPSSAYVFLI 1909

Query: 207  SVHFFTGLILMVISFIMGLIE---TMAKTNSFLK 231
             ++ F G+   V +F++ L E    +   NS+LK
Sbjct: 1910 VINLFIGITATVATFLLQLFEHDKDLKVVNSYLK 1943

[Close]
BLAST of Csa4G171520 vs. Swiss-Prot
Match: ABCA2_HUMAN (ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3)

HSP 1 Score: 116.7 bits (291), Expect = 3.6e-25
Identity = 70/214 (32.71%), Postives = 109/214 (50.93%), Query Frame = 1 

Query: 27   VLHNCSCQHSAPTFINIVDAAILR--LATGDQNMT---IQTRNHPLPMTKSQRLQRHDLD 86
            V +N    HS PT++N ++ AILR  L     N     I   NHP+  T +     + L 
Sbjct: 1729 VFYNNKGYHSMPTYLNSLNNAILRANLPKSKGNPAAYGITVTNHPMNKTSASLSLDYLLQ 1788

Query: 87   A--FAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISGVSMLSYWISTYLWDAISFL 146
                  AI I +A  F+PASF V LV E+ TKAKH Q +SG + + YW++ Y+WD +++L
Sbjct: 1789 GTDVVIAIFIIVAMSFVPASFVVFLVAEKSTKAKHLQFVSGCNPIIYWLANYVWDMLNYL 1848

Query: 147  VPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVL 206
            VP     ++ ++F +  +     F A   +FL YG +I    Y  +F+F   + A   ++
Sbjct: 1849 VPATCCVIILFVFDLPAYTSPTNFPAVLSLFLLYGWSITPIMYPASFWFEVPSSAYVFLI 1908

Query: 207  SVHFFTGLILMVISFIMGLIE---TMAKTNSFLK 231
             ++ F G+   V +F++ L E    +   NS+LK
Sbjct: 1909 VINLFIGITATVATFLLQLFEHDKDLKVVNSYLK 1942

[Close]
BLAST of Csa4G171520 vs. Swiss-Prot
Match: ABCA1_HUMAN (ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1 PE=1 SV=3)

HSP 1 Score: 113.6 bits (283), Expect = 3.1e-24
Identity = 66/192 (34.38%), Postives = 102/192 (53.12%), Query Frame = 1 

Query: 35   HSAPTFINIVDAAILR--LATGDQ--NMTIQTRNHPLPMTKSQ----RLQRHDLDAFAAA 94
            H+  +F+N+++ AILR  L  G+   +  I   NHPL +TK Q     L    +D   + 
Sbjct: 1600 HAISSFLNVINNAILRANLQKGENPSHYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSI 1659

Query: 95   IIINIAFCFIPASFAVSLVKERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLAF 154
             +I  A  F+PASF V L++ER +KAKH Q ISGV  + YW+S ++WD  +++VP  L  
Sbjct: 1660 CVI-FAMSFVPASFVVFLIQERVSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVI 1719

Query: 155  VLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTG 214
            ++F  F    ++        A++ L YG +I    Y  +F F   + A  V+ SV+ F G
Sbjct: 1720 IIFICFQQKSYVSSTNLPVLALLLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIG 1779

Query: 215  LILMVISFIMGL 219
            +   V +F++ L
Sbjct: 1780 INGSVATFVLEL 1790

[Close]
BLAST of Csa4G171520 vs. TrEMBL
Match: A0A0A0KZR5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G171520 PE=4 SV=1)

HSP 1 Score: 498.4 bits (1282), Expect = 5.0e-138
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 1 

Query: 1   MVPLVLFRYGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTI 60
           MVPLVLFRYGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTI
Sbjct: 1   MVPLVLFRYGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTI 60

Query: 61  QTRNHPLPMTKSQRLQRHDLDAFAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISG 120
           QTRNHPLPMTKSQRLQRHDLDAFAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISG
Sbjct: 61  QTRNHPLPMTKSQRLQRHDLDAFAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISG 120

Query: 121 VSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASS 180
           VSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASS
Sbjct: 121 VSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASS 180

Query: 181 TYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLKVGSLDVFVYI 240
           TYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLKVGSLDVFVYI
Sbjct: 181 TYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLKVGSLDVFVYI 240

Query: 241 EYSPKWFVF 250
           EYSPKWFVF
Sbjct: 241 EYSPKWFVF 249

[Close]
BLAST of Csa4G171520 vs. TrEMBL
Match: A0A097P9N9_HEVBR (ABC transporter family protein OS=Hevea brasiliensis GN=ABCA1 PE=2 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 4.5e-99
Identity = 178/223 (79.82%), Postives = 201/223 (90.13%), Query Frame = 1 

Query: 8    RYGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPL 67
            RYGA+VMDDQN DGS+GYTVLHN SCQH+APT+IN+++AAILRLATGD+NMTI+TRNHPL
Sbjct: 1106 RYGAVVMDDQNDDGSLGYTVLHNSSCQHAAPTYINVMNAAILRLATGDKNMTIRTRNHPL 1165

Query: 68   PMTKSQRLQRHDLDAFAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISGVSMLSYW 127
            PMTKSQ LQRHDLDAF+AA+IINIAF FIPASFAV++VKERE KAKHQQ+ISGVS+LSYW
Sbjct: 1166 PMTKSQHLQRHDLDAFSAAVIINIAFSFIPASFAVAIVKEREVKAKHQQLISGVSVLSYW 1225

Query: 128  ISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFF 187
             STY+WD ISFL P+ LA VLFYIFG+DQFIG+  F  T +IFLEYGLAIASSTYCLTF 
Sbjct: 1226 ASTYIWDFISFLFPSFLAIVLFYIFGLDQFIGRDCFFPTLLIFLEYGLAIASSTYCLTFL 1285

Query: 188  FLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLK 231
            F DHT+AQNVVL VHFFTGL+LMVISFIMGLIET    N+FLK
Sbjct: 1286 FSDHTMAQNVVLLVHFFTGLVLMVISFIMGLIETTRSANNFLK 1328

[Close]
BLAST of Csa4G171520 vs. TrEMBL
Match: A0A067K2P2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21102 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 4.5e-99
Identity = 178/223 (79.82%), Postives = 202/223 (90.58%), Query Frame = 1 

Query: 8   RYGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPL 67
           RYGAI+MDDQN DGS+GYTVLHN SCQH+APT+INI++AAILRLATGD+NMTI+TRNHPL
Sbjct: 758 RYGAIIMDDQNDDGSLGYTVLHNSSCQHAAPTYINIMNAAILRLATGDKNMTIRTRNHPL 817

Query: 68  PMTKSQRLQRHDLDAFAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISGVSMLSYW 127
           PMTKSQ LQRHDLDAF+AA+IINIAF FIPASFAV++VKERE KAKHQQ+ISGVS+LSYW
Sbjct: 818 PMTKSQHLQRHDLDAFSAAVIINIAFSFIPASFAVAIVKEREVKAKHQQLISGVSVLSYW 877

Query: 128 ISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFF 187
            STY+WD ISFL P+  A VLFYIFG+DQFIG+  FL T ++FLEYGLAIASSTYCLTF 
Sbjct: 878 ASTYIWDFISFLFPSFFAIVLFYIFGLDQFIGRDCFLPTLLLFLEYGLAIASSTYCLTFL 937

Query: 188 FLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLK 231
           F DHT+AQNVVL VHFFTGLILMV+SFIMGLI+T A  N+FLK
Sbjct: 938 FSDHTMAQNVVLLVHFFTGLILMVLSFIMGLIQTTASANNFLK 980

[Close]
BLAST of Csa4G171520 vs. TrEMBL
Match: A0A059DHV3_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_A023392 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 1.0e-98
Identity = 178/223 (79.82%), Postives = 199/223 (89.24%), Query Frame = 1 

Query: 8    RYGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPL 67
            RYGAIVMDDQN DGS+GYTVLHNCSCQH+APTFIN++++AILRLAT D+NMTI+TRNHPL
Sbjct: 970  RYGAIVMDDQNDDGSLGYTVLHNCSCQHAAPTFINLMNSAILRLATQDKNMTIRTRNHPL 1029

Query: 68   PMTKSQRLQRHDLDAFAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISGVSMLSYW 127
            PMTKSQRLQ HDLDAF+AAIIINIAF FIPASFAVS+VKERE KAKHQQ+ISGVS+LSYW
Sbjct: 1030 PMTKSQRLQHHDLDAFSAAIIINIAFSFIPASFAVSIVKEREVKAKHQQLISGVSILSYW 1089

Query: 128  ISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFF 187
             S Y+WD ISFL P+  A VLFYIFG+DQFIG G FL T ++FLEYGLAIASSTYCLTFF
Sbjct: 1090 TSIYIWDFISFLFPSSFAIVLFYIFGLDQFIGAGSFLPTFLMFLEYGLAIASSTYCLTFF 1149

Query: 188  FLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLK 231
            F+DHT+AQNVVL VH FTGLILM+ISFIMGL+ T    N FLK
Sbjct: 1150 FMDHTMAQNVVLLVHVFTGLILMIISFIMGLLPTTRSANDFLK 1192

[Close]
BLAST of Csa4G171520 vs. TrEMBL
Match: F6HKV8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08730 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 1.1e-97
Identity = 175/223 (78.48%), Postives = 199/223 (89.24%), Query Frame = 1 

Query: 8    RYGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPL 67
            RYGA+VMDDQN DGS+GYTVLHN SCQH+APTFIN+++AAILR AT ++NMTIQTRNHPL
Sbjct: 1104 RYGAVVMDDQNKDGSLGYTVLHNGSCQHAAPTFINLMNAAILRFATLNKNMTIQTRNHPL 1163

Query: 68   PMTKSQRLQRHDLDAFAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISGVSMLSYW 127
            PMTKSQ LQRHDLDAF+AA+I+NIA  F+PASFAVS+VKERE KAKHQQ+ISGVS+LSYW
Sbjct: 1164 PMTKSQHLQRHDLDAFSAAVIVNIALSFVPASFAVSIVKEREVKAKHQQLISGVSVLSYW 1223

Query: 128  ISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFF 187
             STYLWD +SFL+P+  A  LFYIFGMDQFIGKGRF  T ++FLEYGLAIASSTYCLTF 
Sbjct: 1224 ASTYLWDFVSFLLPSSFAITLFYIFGMDQFIGKGRFFPTVLMFLEYGLAIASSTYCLTFS 1283

Query: 188  FLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLK 231
            F DHT+AQNVVL +HFFTGL+LMVISFIMGLI+T   TNS LK
Sbjct: 1284 FSDHTMAQNVVLLLHFFTGLVLMVISFIMGLIQTTESTNSVLK 1326

[Close]
BLAST of Csa4G171520 vs. TAIR10
Match: AT2G41700.1 (AT2G41700.1 ATP-binding cassette A1)

HSP 1 Score: 345.5 bits (885), Expect = 2.7e-95
Identity = 163/223 (73.09%), Postives = 194/223 (87.00%), Query Frame = 1 

Query: 8    RYGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPL 67
            RYG+I+MD Q+ DGS+GYTVLHN +CQH+ P +IN++ AAILRLATG++NMTIQTRNHPL
Sbjct: 1101 RYGSILMDGQHPDGSLGYTVLHNGTCQHAGPIYINVMHAAILRLATGNKNMTIQTRNHPL 1160

Query: 68   PMTKSQRLQRHDLDAFAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISGVSMLSYW 127
            P TK+QR+QRHDLDAF+AAII+NIAF FIPASFAV +VKERE KAKHQQ+ISGVS+LSYW
Sbjct: 1161 PPTKTQRIQRHDLDAFSAAIIVNIAFSFIPASFAVPIVKEREVKAKHQQLISGVSVLSYW 1220

Query: 128  ISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFF 187
            +STY+WD ISFL P+  A +LFY FG++QFIG GRFL T ++ LEYGLAIASSTYCLTFF
Sbjct: 1221 LSTYVWDFISFLFPSTFAIILFYAFGLEQFIGIGRFLPTVLMLLEYGLAIASSTYCLTFF 1280

Query: 188  FLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLK 231
            F +H++AQNV+L VHFF+GLILMVISF+MGLI   A  NS+LK
Sbjct: 1281 FTEHSMAQNVILMVHFFSGLILMVISFVMGLIPATASANSYLK 1323

[Close]
BLAST of Csa4G171520 vs. NCBI nr
Match: gi|700198704|gb|KGN53862.1| (hypothetical protein Csa_4G171520 [Cucumis sativus])

HSP 1 Score: 498.4 bits (1282), Expect = 7.1e-138
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 1 

Query: 1   MVPLVLFRYGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTI 60
           MVPLVLFRYGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTI
Sbjct: 1   MVPLVLFRYGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTI 60

Query: 61  QTRNHPLPMTKSQRLQRHDLDAFAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISG 120
           QTRNHPLPMTKSQRLQRHDLDAFAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISG
Sbjct: 61  QTRNHPLPMTKSQRLQRHDLDAFAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISG 120

Query: 121 VSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASS 180
           VSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASS
Sbjct: 121 VSMLSYWISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASS 180

Query: 181 TYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLKVGSLDVFVYI 240
           TYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLKVGSLDVFVYI
Sbjct: 181 TYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLKVGSLDVFVYI 240

Query: 241 EYSPKWFVF 250
           EYSPKWFVF
Sbjct: 241 EYSPKWFVF 249

[Close]
BLAST of Csa4G171520 vs. NCBI nr
Match: gi|778692294|ref|XP_011653437.1| (PREDICTED: ABC transporter A family member 1 isoform X6 [Cucumis sativus])

HSP 1 Score: 445.3 bits (1144), Expect = 7.2e-122
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1 

Query: 8    RYGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPL 67
            RYGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPL
Sbjct: 1108 RYGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPL 1167

Query: 68   PMTKSQRLQRHDLDAFAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISGVSMLSYW 127
            PMTKSQRLQRHDLDAFAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISGVSMLSYW
Sbjct: 1168 PMTKSQRLQRHDLDAFAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISGVSMLSYW 1227

Query: 128  ISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFF 187
            ISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFF
Sbjct: 1228 ISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFF 1287

Query: 188  FLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLK 231
            FLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLK
Sbjct: 1288 FLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLK 1330

[Close]
BLAST of Csa4G171520 vs. NCBI nr
Match: gi|778692291|ref|XP_011653436.1| (PREDICTED: ABC transporter A family member 1 isoform X5 [Cucumis sativus])

HSP 1 Score: 445.3 bits (1144), Expect = 7.2e-122
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1 

Query: 8    RYGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPL 67
            RYGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPL
Sbjct: 890  RYGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPL 949

Query: 68   PMTKSQRLQRHDLDAFAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISGVSMLSYW 127
            PMTKSQRLQRHDLDAFAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISGVSMLSYW
Sbjct: 950  PMTKSQRLQRHDLDAFAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISGVSMLSYW 1009

Query: 128  ISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFF 187
            ISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFF
Sbjct: 1010 ISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFF 1069

Query: 188  FLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLK 231
            FLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLK
Sbjct: 1070 FLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLK 1112

[Close]
BLAST of Csa4G171520 vs. NCBI nr
Match: gi|778692274|ref|XP_011653432.1| (PREDICTED: ABC transporter A family member 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 445.3 bits (1144), Expect = 7.2e-122
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1 

Query: 8    RYGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPL 67
            RYGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPL
Sbjct: 1108 RYGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPL 1167

Query: 68   PMTKSQRLQRHDLDAFAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISGVSMLSYW 127
            PMTKSQRLQRHDLDAFAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISGVSMLSYW
Sbjct: 1168 PMTKSQRLQRHDLDAFAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISGVSMLSYW 1227

Query: 128  ISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFF 187
            ISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFF
Sbjct: 1228 ISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFF 1287

Query: 188  FLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLK 231
            FLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLK
Sbjct: 1288 FLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLK 1330

[Close]
BLAST of Csa4G171520 vs. NCBI nr
Match: gi|778692276|ref|XP_011653433.1| (PREDICTED: ABC transporter A family member 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 445.3 bits (1144), Expect = 7.2e-122
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1 

Query: 8    RYGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPL 67
            RYGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPL
Sbjct: 1108 RYGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPL 1167

Query: 68   PMTKSQRLQRHDLDAFAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISGVSMLSYW 127
            PMTKSQRLQRHDLDAFAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISGVSMLSYW
Sbjct: 1168 PMTKSQRLQRHDLDAFAAAIIINIAFCFIPASFAVSLVKERETKAKHQQMISGVSMLSYW 1227

Query: 128  ISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFF 187
            ISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFF
Sbjct: 1228 ISTYLWDAISFLVPTCLAFVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFF 1287

Query: 188  FLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLK 231
            FLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLK
Sbjct: 1288 FLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLK 1330

The following BLAST results are available for this feature:
BLAST of Csa4G171520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AB1A_ARATH4.8e-9473.09ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1 PE=2 SV=2[more]
ABCA2_RAT1.3e-2533.18ATP-binding cassette sub-family A member 2 OS=Rattus norvegicus GN=Abca2 PE=1 SV... [more]
ABCA2_MOUSE1.6e-2533.18ATP-binding cassette sub-family A member 2 OS=Mus musculus GN=Abca2 PE=1 SV=4[more]
ABCA2_HUMAN3.6e-2532.71ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3[more]
ABCA1_HUMAN3.1e-2434.38ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1 PE=1 SV=3[more]
BLAST of Csa4G171520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZR5_CUCSA5.0e-138100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G171520 PE=4 SV=1[more]
A0A097P9N9_HEVBR4.5e-9979.82ABC transporter family protein OS=Hevea brasiliensis GN=ABCA1 PE=2 SV=1[more]
A0A067K2P2_JATCU4.5e-9979.82Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21102 PE=4 SV=1[more]
A0A059DHV3_EUCGR1.0e-9879.82Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_A023392 PE=4... [more]
F6HKV8_VITVI1.1e-9778.48Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08730 PE=4 SV=... [more]
BLAST of Csa4G171520 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G41700.12.7e-9573.09 ATP-binding cassette A1[more]
BLAST of Csa4G171520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198704|gb|KGN53862.1|7.1e-138100.00hypothetical protein Csa_4G171520 [Cucumis sativus][more]
gi|778692294|ref|XP_011653437.1|7.2e-122100.00PREDICTED: ABC transporter A family member 1 isoform X6 [Cucumis sativus][more]
gi|778692291|ref|XP_011653436.1|7.2e-122100.00PREDICTED: ABC transporter A family member 1 isoform X5 [Cucumis sativus][more]
gi|778692274|ref|XP_011653432.1|7.2e-122100.00PREDICTED: ABC transporter A family member 1 isoform X1 [Cucumis sativus][more]
gi|778692276|ref|XP_011653433.1|7.2e-122100.00PREDICTED: ABC transporter A family member 1 isoform X2 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026082ABCA
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006487 protein N-linked glycosylation
biological_process GO:0006810 transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005774 vacuolar membrane
molecular_function GO:0016887 ATPase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0005215 transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G171520.1Csa4G171520.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026082ABC transporter A, ABCAPANTHERPTHR19229ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCAcoord: 8..220
score: 2.1
NoneNo IPR availablePANTHERPTHR19229:SF36PROTEIN ABT-4coord: 8..220
score: 2.1
NoneNo IPR availablePFAMPF12698ABC2_membrane_3coord: 10..230
score: 3.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G171520CSPI04G10780Wild cucumber (PI 183967)cpicuB182
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G171520Cucumber (Gy14) v1cgycuB246
Csa4G171520Cucurbita maxima (Rimu)cmacuB666
Csa4G171520Cucurbita maxima (Rimu)cmacuB868
Csa4G171520Cucurbita moschata (Rifu)cmocuB654
Csa4G171520Cucurbita moschata (Rifu)cmocuB857
Csa4G171520Melon (DHL92) v3.5.1cumeB331
Csa4G171520Watermelon (Charleston Gray)cuwcgB308
Csa4G171520Watermelon (97103) v1cuwmB344
Csa4G171520Cucurbita pepo (Zucchini)cpecuB080
Csa4G171520Cucurbita pepo (Zucchini)cpecuB489
Csa4G171520Cucumber (Gy14) v2cgybcuB165
Csa4G171520Melon (DHL92) v3.6.1cumedB313
Csa4G171520Silver-seed gourdcarcuB0213
Csa4G171520Silver-seed gourdcarcuB0313
Csa4G171520Wax gourdcuwgoB392