Csa4G171500 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G171500
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Heat stress transcription factor B-3
Location	Chr4 : 8766837 .. 8767122 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCATCAAACTCATCATCTTCACAGTACATTACTCTAATGGACGAGAACAAGAGGTTGAAGAAGGAAAATGGGGCCTTAAGCTCAGAACTTGCAAGCATGAAAAACAAATGCAAAGGGCTTTTTGATTTGGTGGCTACGTATGAAAATATTTCAAAGAAAGAAGATGAAGATGTGAGGCCAAAGCTGTTTGGAGTAAGGTTGGAAGGAGAGAGAGAGAGGAAGATAAAAAGGGGAGAAGAGATTAGTGAAACTACAACTATTTTGCTATCTCAATCATGCAAATGA

mRNA sequence

ATGGACGAGAACAAGAGGTTGAAGAAGGAAAATGGGGCCTTAAGCTCAGAACTTGCAAGCATGAAAAACAAATGCAAAGGGCTTTTTGATTTGGTGGCTACGTATGAAAATATTTCAAAGAAAGAAGATGAAGATGTGAGGCCAAAGCTGTTTGGAGTAAGGTTGGAAGGAGAGAGAGAGAGGAAGATAAAAAGGGGAGAAGAGATTAGTGAAACTACAACTATTTTGCTATCTCAATCATGCAAATGA

Coding sequence (CDS)

ATGGACGAGAACAAGAGGTTGAAGAAGGAAAATGGGGCCTTAAGCTCAGAACTTGCAAGCATGAAAAACAAATGCAAAGGGCTTTTTGATTTGGTGGCTACGTATGAAAATATTTCAAAGAAAGAAGATGAAGATGTGAGGCCAAAGCTGTTTGGAGTAAGGTTGGAAGGAGAGAGAGAGAGGAAGATAAAAAGGGGAGAAGAGATTAGTGAAACTACAACTATTTTGCTATCTCAATCATGCAAATGA

Protein sequence

MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLEGERERKIKRGEEISETTTILLSQSCK*

Homology

[Close]

BLAST of Csa4G171500 vs. TrEMBL
Match: A0A0A0KW58_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G171500 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.6e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLEGERE 60
          MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLEGERE
Sbjct: 1  MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLEGERE 60

Query: 61 RKIKRGEEISETTTILLSQSCK 83
          RKIKRGEEISETTTILLSQSCK
Sbjct: 61 RKIKRGEEISETTTILLSQSCK 82

[Close]

BLAST of Csa4G171500 vs. TrEMBL
Match: A0A0U3SRJ2_VITPS (Transcription factor HsfB3a OS=Vitis pseudoreticulata PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.4e-22
Identity = 60/84 (71.43%), Postives = 67/84 (79.76%), Query Frame = 1


Query: 1   MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLE--GE 60
           +DENKRLKKENG L SEL SMKNKCK L DLVA +    K+E++D RPKLFGVRLE  G+
Sbjct: 157 VDENKRLKKENGVLCSELTSMKNKCKELLDLVAMHAGAEKEEEDDERPKLFGVRLEVQGD 216

Query: 61  RERKIKRGEEISETTTILLSQSCK 83
           RERK KR  EISET +ILLSQSCK
Sbjct: 217 RERKRKRA-EISETASILLSQSCK 239

[Close]

BLAST of Csa4G171500 vs. TrEMBL
Match: F6HKV6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08750 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-21
Identity = 60/84 (71.43%), Postives = 67/84 (79.76%), Query Frame = 1


Query: 1   MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLE--GE 60
           +DENKRLKKENG L SEL SMKNKCK L DLVA +    K+E++D RPKLFGVRLE  G+
Sbjct: 159 VDENKRLKKENGVLCSELTSMKNKCKELLDLVAMHAGPEKEEEDDERPKLFGVRLEVQGD 218

Query: 61  RERKIKRGEEISETTTILLSQSCK 83
           RERK KR  EISET +ILLSQSCK
Sbjct: 219 RERKRKRA-EISETASILLSQSCK 241

[Close]

BLAST of Csa4G171500 vs. TrEMBL
Match: A0A0B2Q4L1_GLYSO (Heat stress transcription factor B-3 OS=Glycine soja GN=glysoja_024088 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.3e-20
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 1


Query: 1   MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLEGERE 60
           +DENKRLKKENG L+SEL SMK KCK L DLVATY + +K+E +D RP LFGVRLE +  
Sbjct: 149 VDENKRLKKENGVLNSELTSMKRKCKELLDLVATYSSHAKEEKKDERPMLFGVRLEVQGG 208

Query: 61  RKIKRGE-EISETTTILLSQSCK 83
           R++KR   E+SE+T+I+LSQSCK
Sbjct: 209 REMKRNRAEMSESTSIMLSQSCK 231

[Close]

BLAST of Csa4G171500 vs. TrEMBL
Match: I1N8Z6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G137800 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.3e-20
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 1


Query: 1   MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLEGERE 60
           +DENKRLKKENG L+SEL SMK KCK L DLVATY + +K+E +D RP LFGVRLE +  
Sbjct: 149 VDENKRLKKENGVLNSELTSMKRKCKELLDLVATYSSHAKEEKKDERPMLFGVRLEVQGG 208

Query: 61  RKIKRGE-EISETTTILLSQSCK 83
           R++KR   E+SE+T+I+LSQSCK
Sbjct: 209 REMKRNRAEMSESTSIMLSQSCK 231

[Close]

BLAST of Csa4G171500 vs. TAIR10
Match: AT2G41690.1 (AT2G41690.1 heat shock transcription factor B3)

HSP 1 Score: 50.1 bits (118), Expect = 7.8e-07
Identity = 29/62 (46.77%), Postives = 33/62 (53.23%), Query Frame = 1


Query: 1   MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISK------KEDEDVRPKLFGVR 57
           +DENK LK EN  LS EL   K KCK L +LV  Y    +       ++ED   KLFGV+
Sbjct: 183 LDENKCLKNENELLSCELGKTKKKCKQLMELVERYRGEDEDATDESDDEEDEGLKLFGVK 242

[Close]

BLAST of Csa4G171500 vs. NCBI nr
Match: gi|449463360|ref|XP_004149402.1| (PREDICTED: heat stress transcription factor B-3 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 2.4e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1   MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLEGERE 60
           MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLEGERE
Sbjct: 160 MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLEGERE 219

Query: 61  RKIKRGEEISETTTILLSQSCK 83
           RKIKRGEEISETTTILLSQSCK
Sbjct: 220 RKIKRGEEISETTTILLSQSCK 241

[Close]

BLAST of Csa4G171500 vs. NCBI nr
Match: gi|700198702|gb|KGN53860.1| (hypothetical protein Csa_4G171500 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 2.4e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLEGERE 60
          MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLEGERE
Sbjct: 1  MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLEGERE 60

Query: 61 RKIKRGEEISETTTILLSQSCK 83
          RKIKRGEEISETTTILLSQSCK
Sbjct: 61 RKIKRGEEISETTTILLSQSCK 82

[Close]

BLAST of Csa4G171500 vs. NCBI nr
Match: gi|659121625|ref|XP_008460754.1| (PREDICTED: LOW QUALITY PROTEIN: heat stress transcription factor B-3 [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-33
Identity = 77/82 (93.90%), Postives = 78/82 (95.12%), Query Frame = 1


Query: 1   MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLEGERE 60
           MDENKRLKKENGALSSELASMKNKCK LFDLVATYENISKKEDED R KLFGVRLEG+RE
Sbjct: 160 MDENKRLKKENGALSSELASMKNKCKELFDLVATYENISKKEDEDERXKLFGVRLEGDRE 219

Query: 61  RKIKRGEEISETTTILLSQSCK 83
           RK KRGEEISETTTILLSQSCK
Sbjct: 220 RKRKRGEEISETTTILLSQSCK 241

[Close]

BLAST of Csa4G171500 vs. NCBI nr
Match: gi|971533959|gb|ALV82484.1| (transcription factor HsfB3a [Vitis pseudoreticulata])

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 60/84 (71.43%), Postives = 67/84 (79.76%), Query Frame = 1


Query: 1   MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLE--GE 60
           +DENKRLKKENG L SEL SMKNKCK L DLVA +    K+E++D RPKLFGVRLE  G+
Sbjct: 157 VDENKRLKKENGVLCSELTSMKNKCKELLDLVAMHAGAEKEEEDDERPKLFGVRLEVQGD 216

Query: 61  RERKIKRGEEISETTTILLSQSCK 83
           RERK KR  EISET +ILLSQSCK
Sbjct: 217 RERKRKRA-EISETASILLSQSCK 239

[Close]

BLAST of Csa4G171500 vs. NCBI nr
Match: gi|225441862|ref|XP_002284216.1| (PREDICTED: heat stress transcription factor B-3 [Vitis vinifera])

HSP 1 Score: 110.2 bits (274), Expect = 1.8e-21
Identity = 60/84 (71.43%), Postives = 67/84 (79.76%), Query Frame = 1


Query: 1   MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLE--GE 60
           +DENKRLKKENG L SEL SMKNKCK L DLVA +    K+E++D RPKLFGVRLE  G+
Sbjct: 160 VDENKRLKKENGVLCSELTSMKNKCKELLDLVAMHAGPEKEEEDDERPKLFGVRLEVQGD 219

Query: 61  RERKIKRGEEISETTTILLSQSCK 83
           RERK KR  EISET +ILLSQSCK
Sbjct: 220 RERKRKRA-EISETASILLSQSCK 242

The following BLAST results are available for this feature:

BLAST of Csa4G171500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW58_CUCSA	1.6e-37	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G171500 PE=4 SV=1	[more]
A0A0U3SRJ2_VITPS	7.4e-22	71.43	Transcription factor HsfB3a OS=Vitis pseudoreticulata PE=2 SV=1	[more]
F6HKV6_VITVI	1.3e-21	71.43	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08750 PE=3 SV=...	[more]
A0A0B2Q4L1_GLYSO	5.3e-20	65.06	Heat stress transcription factor B-3 OS=Glycine soja GN=glysoja_024088 PE=3 SV=1	[more]
I1N8Z6_SOYBN	5.3e-20	65.06	Uncharacterized protein OS=Glycine max GN=GLYMA_19G137800 PE=3 SV=1	[more]

BLAST of Csa4G171500 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G41690.1	7.8e-07	46.77	heat shock transcription factor B3	[more]

BLAST of Csa4G171500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463360\|ref\|XP_004149402.1\|	2.4e-37	100.00	PREDICTED: heat stress transcription factor B-3 [Cucumis sativus]	[more]
gi\|700198702\|gb\|KGN53860.1\|	2.4e-37	100.00	hypothetical protein Csa_4G171500 [Cucumis sativus]	[more]
gi\|659121625\|ref\|XP_008460754.1\|	1.2e-33	93.90	PREDICTED: LOW QUALITY PROTEIN: heat stress transcription factor B-3 [Cucumis me...	[more]
gi\|971533959\|gb\|ALV82484.1\|	1.1e-21	71.43	transcription factor HsfB3a [Vitis pseudoreticulata]	[more]
gi\|225441862\|ref\|XP_002284216.1\|	1.8e-21	71.43	PREDICTED: heat stress transcription factor B-3 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G171500.1	Csa4G171500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 4..24 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G171500	Silver-seed gourd	carcuB0213
Csa4G171500	Silver-seed gourd	carcuB0313
Csa4G171500	Wax gourd	cuwgoB392
Csa4G171500	Cucumber (Gy14) v1	cgycuB246
Csa4G171500	Cucurbita maxima (Rimu)	cmacuB666
Csa4G171500	Cucurbita maxima (Rimu)	cmacuB868
Csa4G171500	Cucurbita moschata (Rifu)	cmocuB654
Csa4G171500	Cucurbita moschata (Rifu)	cmocuB857
Csa4G171500	Melon (DHL92) v3.5.1	cumeB331
Csa4G171500	Watermelon (Charleston Gray)	cuwcgB299
Csa4G171500	Watermelon (Charleston Gray)	cuwcgB308
Csa4G171500	Watermelon (97103) v1	cuwmB344
Csa4G171500	Cucurbita pepo (Zucchini)	cpecuB080
Csa4G171500	Cucurbita pepo (Zucchini)	cpecuB489
Csa4G171500	Cucumber (Gy14) v2	cgybcuB165
Csa4G171500	Melon (DHL92) v3.6.1	cumedB313