Csa4G171500 (gene) Cucumber (Chinese Long) v2

NameCsa4G171500
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionHeat stress transcription factor B-3
LocationChr4 : 8766837 .. 8767122 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCATCAAACTCATCATCTTCACAGTACATTACTCTAATGGACGAGAACAAGAGGTTGAAGAAGGAAAATGGGGCCTTAAGCTCAGAACTTGCAAGCATGAAAAACAAATGCAAAGGGCTTTTTGATTTGGTGGCTACGTATGAAAATATTTCAAAGAAAGAAGATGAAGATGTGAGGCCAAAGCTGTTTGGAGTAAGGTTGGAAGGAGAGAGAGAGAGGAAGATAAAAAGGGGAGAAGAGATTAGTGAAACTACAACTATTTTGCTATCTCAATCATGCAAATGA

mRNA sequence

ATGGACGAGAACAAGAGGTTGAAGAAGGAAAATGGGGCCTTAAGCTCAGAACTTGCAAGCATGAAAAACAAATGCAAAGGGCTTTTTGATTTGGTGGCTACGTATGAAAATATTTCAAAGAAAGAAGATGAAGATGTGAGGCCAAAGCTGTTTGGAGTAAGGTTGGAAGGAGAGAGAGAGAGGAAGATAAAAAGGGGAGAAGAGATTAGTGAAACTACAACTATTTTGCTATCTCAATCATGCAAATGA

Coding sequence (CDS)

ATGGACGAGAACAAGAGGTTGAAGAAGGAAAATGGGGCCTTAAGCTCAGAACTTGCAAGCATGAAAAACAAATGCAAAGGGCTTTTTGATTTGGTGGCTACGTATGAAAATATTTCAAAGAAAGAAGATGAAGATGTGAGGCCAAAGCTGTTTGGAGTAAGGTTGGAAGGAGAGAGAGAGAGGAAGATAAAAAGGGGAGAAGAGATTAGTGAAACTACAACTATTTTGCTATCTCAATCATGCAAATGA

Protein sequence

MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLEGERERKIKRGEEISETTTILLSQSCK*
BLAST of Csa4G171500 vs. TrEMBL
Match: A0A0A0KW58_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G171500 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.6e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1

Query: 1  MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLEGERE 60
          MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLEGERE
Sbjct: 1  MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLEGERE 60

Query: 61 RKIKRGEEISETTTILLSQSCK 83
          RKIKRGEEISETTTILLSQSCK
Sbjct: 61 RKIKRGEEISETTTILLSQSCK 82

BLAST of Csa4G171500 vs. TrEMBL
Match: A0A0U3SRJ2_VITPS (Transcription factor HsfB3a OS=Vitis pseudoreticulata PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.4e-22
Identity = 60/84 (71.43%), Postives = 67/84 (79.76%), Query Frame = 1

Query: 1   MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLE--GE 60
           +DENKRLKKENG L SEL SMKNKCK L DLVA +    K+E++D RPKLFGVRLE  G+
Sbjct: 157 VDENKRLKKENGVLCSELTSMKNKCKELLDLVAMHAGAEKEEEDDERPKLFGVRLEVQGD 216

Query: 61  RERKIKRGEEISETTTILLSQSCK 83
           RERK KR  EISET +ILLSQSCK
Sbjct: 217 RERKRKRA-EISETASILLSQSCK 239

BLAST of Csa4G171500 vs. TrEMBL
Match: F6HKV6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08750 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-21
Identity = 60/84 (71.43%), Postives = 67/84 (79.76%), Query Frame = 1

Query: 1   MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLE--GE 60
           +DENKRLKKENG L SEL SMKNKCK L DLVA +    K+E++D RPKLFGVRLE  G+
Sbjct: 159 VDENKRLKKENGVLCSELTSMKNKCKELLDLVAMHAGPEKEEEDDERPKLFGVRLEVQGD 218

Query: 61  RERKIKRGEEISETTTILLSQSCK 83
           RERK KR  EISET +ILLSQSCK
Sbjct: 219 RERKRKRA-EISETASILLSQSCK 241

BLAST of Csa4G171500 vs. TrEMBL
Match: A0A0B2Q4L1_GLYSO (Heat stress transcription factor B-3 OS=Glycine soja GN=glysoja_024088 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.3e-20
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 1

Query: 1   MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLEGERE 60
           +DENKRLKKENG L+SEL SMK KCK L DLVATY + +K+E +D RP LFGVRLE +  
Sbjct: 149 VDENKRLKKENGVLNSELTSMKRKCKELLDLVATYSSHAKEEKKDERPMLFGVRLEVQGG 208

Query: 61  RKIKRGE-EISETTTILLSQSCK 83
           R++KR   E+SE+T+I+LSQSCK
Sbjct: 209 REMKRNRAEMSESTSIMLSQSCK 231

BLAST of Csa4G171500 vs. TrEMBL
Match: I1N8Z6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G137800 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.3e-20
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 1

Query: 1   MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLEGERE 60
           +DENKRLKKENG L+SEL SMK KCK L DLVATY + +K+E +D RP LFGVRLE +  
Sbjct: 149 VDENKRLKKENGVLNSELTSMKRKCKELLDLVATYSSHAKEEKKDERPMLFGVRLEVQGG 208

Query: 61  RKIKRGE-EISETTTILLSQSCK 83
           R++KR   E+SE+T+I+LSQSCK
Sbjct: 209 REMKRNRAEMSESTSIMLSQSCK 231

BLAST of Csa4G171500 vs. TAIR10
Match: AT2G41690.1 (AT2G41690.1 heat shock transcription factor B3)

HSP 1 Score: 50.1 bits (118), Expect = 7.8e-07
Identity = 29/62 (46.77%), Postives = 33/62 (53.23%), Query Frame = 1

Query: 1   MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISK------KEDEDVRPKLFGVR 57
           +DENK LK EN  LS EL   K KCK L +LV  Y    +       ++ED   KLFGV+
Sbjct: 183 LDENKCLKNENELLSCELGKTKKKCKQLMELVERYRGEDEDATDESDDEEDEGLKLFGVK 242

BLAST of Csa4G171500 vs. NCBI nr
Match: gi|449463360|ref|XP_004149402.1| (PREDICTED: heat stress transcription factor B-3 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 2.4e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1

Query: 1   MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLEGERE 60
           MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLEGERE
Sbjct: 160 MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLEGERE 219

Query: 61  RKIKRGEEISETTTILLSQSCK 83
           RKIKRGEEISETTTILLSQSCK
Sbjct: 220 RKIKRGEEISETTTILLSQSCK 241

BLAST of Csa4G171500 vs. NCBI nr
Match: gi|700198702|gb|KGN53860.1| (hypothetical protein Csa_4G171500 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 2.4e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1

Query: 1  MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLEGERE 60
          MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLEGERE
Sbjct: 1  MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLEGERE 60

Query: 61 RKIKRGEEISETTTILLSQSCK 83
          RKIKRGEEISETTTILLSQSCK
Sbjct: 61 RKIKRGEEISETTTILLSQSCK 82

BLAST of Csa4G171500 vs. NCBI nr
Match: gi|659121625|ref|XP_008460754.1| (PREDICTED: LOW QUALITY PROTEIN: heat stress transcription factor B-3 [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-33
Identity = 77/82 (93.90%), Postives = 78/82 (95.12%), Query Frame = 1

Query: 1   MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLEGERE 60
           MDENKRLKKENGALSSELASMKNKCK LFDLVATYENISKKEDED R KLFGVRLEG+RE
Sbjct: 160 MDENKRLKKENGALSSELASMKNKCKELFDLVATYENISKKEDEDERXKLFGVRLEGDRE 219

Query: 61  RKIKRGEEISETTTILLSQSCK 83
           RK KRGEEISETTTILLSQSCK
Sbjct: 220 RKRKRGEEISETTTILLSQSCK 241

BLAST of Csa4G171500 vs. NCBI nr
Match: gi|971533959|gb|ALV82484.1| (transcription factor HsfB3a [Vitis pseudoreticulata])

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 60/84 (71.43%), Postives = 67/84 (79.76%), Query Frame = 1

Query: 1   MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLE--GE 60
           +DENKRLKKENG L SEL SMKNKCK L DLVA +    K+E++D RPKLFGVRLE  G+
Sbjct: 157 VDENKRLKKENGVLCSELTSMKNKCKELLDLVAMHAGAEKEEEDDERPKLFGVRLEVQGD 216

Query: 61  RERKIKRGEEISETTTILLSQSCK 83
           RERK KR  EISET +ILLSQSCK
Sbjct: 217 RERKRKRA-EISETASILLSQSCK 239

BLAST of Csa4G171500 vs. NCBI nr
Match: gi|225441862|ref|XP_002284216.1| (PREDICTED: heat stress transcription factor B-3 [Vitis vinifera])

HSP 1 Score: 110.2 bits (274), Expect = 1.8e-21
Identity = 60/84 (71.43%), Postives = 67/84 (79.76%), Query Frame = 1

Query: 1   MDENKRLKKENGALSSELASMKNKCKGLFDLVATYENISKKEDEDVRPKLFGVRLE--GE 60
           +DENKRLKKENG L SEL SMKNKCK L DLVA +    K+E++D RPKLFGVRLE  G+
Sbjct: 160 VDENKRLKKENGVLCSELTSMKNKCKELLDLVAMHAGPEKEEEDDERPKLFGVRLEVQGD 219

Query: 61  RERKIKRGEEISETTTILLSQSCK 83
           RERK KR  EISET +ILLSQSCK
Sbjct: 220 RERKRKRA-EISETASILLSQSCK 242

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KW58_CUCSA1.6e-37100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G171500 PE=4 SV=1[more]
A0A0U3SRJ2_VITPS7.4e-2271.43Transcription factor HsfB3a OS=Vitis pseudoreticulata PE=2 SV=1[more]
F6HKV6_VITVI1.3e-2171.43Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08750 PE=3 SV=... [more]
A0A0B2Q4L1_GLYSO5.3e-2065.06Heat stress transcription factor B-3 OS=Glycine soja GN=glysoja_024088 PE=3 SV=1[more]
I1N8Z6_SOYBN5.3e-2065.06Uncharacterized protein OS=Glycine max GN=GLYMA_19G137800 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT2G41690.17.8e-0746.77 heat shock transcription factor B3[more]
Match NameE-valueIdentityDescription
gi|449463360|ref|XP_004149402.1|2.4e-37100.00PREDICTED: heat stress transcription factor B-3 [Cucumis sativus][more]
gi|700198702|gb|KGN53860.1|2.4e-37100.00hypothetical protein Csa_4G171500 [Cucumis sativus][more]
gi|659121625|ref|XP_008460754.1|1.2e-3393.90PREDICTED: LOW QUALITY PROTEIN: heat stress transcription factor B-3 [Cucumis me... [more]
gi|971533959|gb|ALV82484.1|1.1e-2171.43transcription factor HsfB3a [Vitis pseudoreticulata][more]
gi|225441862|ref|XP_002284216.1|1.8e-2171.43PREDICTED: heat stress transcription factor B-3 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G171500.1Csa4G171500.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 4..24
scor

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None